mRNA_P-fluviatile_contig1.440.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.440.1
Unique NamemRNA_P-fluviatile_contig1.440.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4953818..4956065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1110
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.440.1prot_P-fluviatile_contig1.440.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4953818..4955639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.0685468-CDS-P-fluviatile_contig1:4953817..49539991622815267.0685468-CDS-P-fluviatile_contig1:4953817..4953999Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4953818..4953999 +
1693561308.2399678-CDS-P-fluviatile_contig1:4953817..49539991693561308.2399678-CDS-P-fluviatile_contig1:4953817..4953999Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4953818..4953999 +
1622815267.0802476-CDS-P-fluviatile_contig1:4955111..49556081622815267.0802476-CDS-P-fluviatile_contig1:4955111..4955608Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4955112..4955608 +
1693561308.3837147-CDS-P-fluviatile_contig1:4955111..49556081693561308.3837147-CDS-P-fluviatile_contig1:4955111..4955608Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4955112..4955608 +
1622815267.0903823-CDS-P-fluviatile_contig1:4955634..49556391622815267.0903823-CDS-P-fluviatile_contig1:4955634..4955639Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4955635..4955639 +
1693561308.4052083-CDS-P-fluviatile_contig1:4955634..49556391693561308.4052083-CDS-P-fluviatile_contig1:4955634..4955639Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4955635..4955639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.0998034-UTR-P-fluviatile_contig1:4955639..49560651622815267.0998034-UTR-P-fluviatile_contig1:4955639..4956065Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4955640..4956065 +
1693561308.41701-UTR-P-fluviatile_contig1:4955639..49560651693561308.41701-UTR-P-fluviatile_contig1:4955639..4956065Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4955640..4956065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.440.1

>prot_P-fluviatile_contig1.440.1 ID=prot_P-fluviatile_contig1.440.1|Name=mRNA_P-fluviatile_contig1.440.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=228bp
MDIRSFFSSSSGGGGPAKPKTPTSASKKGSPGRVAAASKKASSAGAFKSK
SSNNKGIGKMTFERNSNRNASKTHEKSAAAAKSGQGDDDNDDDDVDVVLV
EPQPAKKKPAAAAKKKAASPKRKSKTAVKGEAGSSDDNEGEGGDVEFVTC
SASRGGGSGGGSRRRAAKSAVNYKEDDEDDGDGQGGGGSAGDDEEDAFSG
ADASDSEADDDDDDDDDDDDFVEEDDA*
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mRNA from alignment at P-fluviatile_contig1:4953818..4956065+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.440.1 ID=mRNA_P-fluviatile_contig1.440.1|Name=mRNA_P-fluviatile_contig1.440.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2248bp|location=Sequence derived from alignment at P-fluviatile_contig1:4953818..4956065+ (Porterinema fluviatile SAG_2381)
ATGGATATTCGGTCTTTCTTCAGCTCATCCTCGGGAGGCGGCGGTCCAGC
CAAGCCGAAAACCCCCACATCAGCCAGCAAGAAGGGAAGCCCCGGGAGGG
TGGCGGCGGCGAGCAAGAAGGCCAGCTCGGCCGGAGCATTCAAGAGCAAG
AGCAGCAACAACAAGGGGATAGGCAAGATGACGTGAGTACTGCGGGAGAG
AGAGGAAGCAGCTGTTGGGTGGTTTGCTGCACATACGGTGCTCAACGGCA
TCAGAGTATTTCGGCGCAAAATGCCGCCCGCTTTGAAATTTCGCTCAAAA
TTTAAAAAACGCGCAAACACGGCGCGATCGGCAGCATGTTTGCGGGGCGT
CAAGGGTCATAACCCCTGCCTACGACCTGGCATCACGCGCACGCAGCTTC
CACTCACACACCCTCAACTAAATAGTTAGAATGCTCTGCGAAACGCTTCA
TGTCTACCGCTGGTTCCTTCGTAGGCACAAGCTTTGAGTTATTTCCTTGC
CCCCGTCCCGCTGTCGTCTTTTGACTTTGAAATCAGCCGTCGGTGCGCTC
TCTTAAGTATTGAAGGTTGGATTAATCTCGACGAGGTCGTGTGTCTCGTA
TGAACACTACCCTCGTCGACCGGTGGTTCTACAGTTGAAGTGCATTCTGC
AGTGCATCGGTCGGTCCCCAAGATTTCGTGGTATTTCAGCAACTTGACGC
CAGTCGATGGCGCAGCAAGCAGGTGTGTGTAGGTAGACGGCAAACTTGTC
GCCATTTTCATGAACCCCCCCAGGAGAGAGGCGGAGTCACCCACCGGGCG
AGAGGTACCCCGGCGTGCCGCAACAAAGCCACACGCGGAGTAGCCATTCA
TATTAAAAGCTGCGTACGGCAGCAGCAGCAGTAGCCTCCGGGTTCTCTCA
TTGGCGCAAAGCAGTCGACAATGCCTGTGATTTTGCACGGCGTAAGCTTA
GTGCGGCCAGCGGCCCTAGTCGACCCGCCCGTGCGAGTGCAACCTTTGTC
TCTCTCTCTCTCTCTGGCAACAATCATCTGAGCGCATTCATAAGCGAACG
ACGCAGTACATGTCGCGTTTTCAAGTGCACAACACGAACATGCACGCTTT
GAAATACTCAACAGGGAGTTTGTGCCACGTATCTGTGTGTCCCTCCTCCT
CTGTGACCCCGGTTGGTCGGTGAACATGACAGAAAACACCGAAAGTTGAT
GCCTTGACTAGCACCAAAGCAATTGGGACGATGAGGCCACACTCACTTGC
GGCTGTCACTCCCCCGGTACCGGCTTCTCTACCTCGCGACTCAGGTTTGA
GAGAAACTCCAACAGGAATGCTTCGAAAACGCACGAGAAGAGCGCAGCGG
CCGCCAAAAGTGGTCAAGGCGATGACGACAACGACGACGACGACGTCGAC
GTTGTGCTAGTGGAGCCGCAACCGGCCAAGAAGAAACCCGCGGCGGCGGC
GAAAAAAAAAGCGGCAAGCCCGAAGAGAAAGTCGAAGACAGCGGTCAAGG
GCGAAGCCGGCAGCAGCGATGACAACGAAGGTGAAGGCGGTGACGTGGAG
TTCGTGACATGCAGCGCTAGCCGCGGCGGCGGCAGCGGCGGCGGCAGCAG
AAGGAGGGCCGCGAAGTCGGCGGTCAATTACAAGGAAGACGACGAAGACG
ACGGCGACGGGCAGGGCGGCGGCGGCAGCGCCGGCGACGACGAGGAGGAT
GCCTTCAGCGGCGCAGACGCCAGCGATAGCGAAGCAGACGACGACGACGA
CGACGACGACGACGACGACGACTTCGTAGAGGAAGACGACGGCCCGAAGT
GGTCCAAATCCCGGAAGCGTAAGCCGGCCCCATCCCCCCGCGCCAAGCGC
AAGAGCAAGAGTGATGAATCTGACGGCGGTGGCGTCAAAAAGAAGAGAGC
AGTCCTCGAGGAGGATGACGATGCGTCGTTGGACGATGACGATGTGCGAG
AGGTGACCAGCTCAAAGCACTTTTCGTCCTCCTCCTCCCCAGCAGGCAAG
AAGAAGGCGGCGCGTGCGCCGGCGGCGGCGGCGGTGGCCAACGGCAAGGA
CAAAAAGGCGAAATCGTCTCCGAAGAAGGCGTCGGCGACGATCGACCTCG
GCGGCACCTCGAGCGACGACGACGACGCCGTGGAAGGAGAACCGGAGGCA
AAGCCTACCCCCCGTCCAAGAAGAAGTCGGCGCCCGCCAGCGTCAGCAGC
AGTGCGAAGAAACCCTCCAGCGGCGGCGGCGGCGGCGGCGGTGGTGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4953818..4956065+

>mRNA_P-fluviatile_contig1.440.1 ID=mRNA_P-fluviatile_contig1.440.1|Name=mRNA_P-fluviatile_contig1.440.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1368bp|location=Sequence derived from alignment at P-fluviatile_contig1:4953818..4956065+ (Porterinema fluviatile SAG_2381)
ATGGATATTCGGTCTTTCTTCAGCTCATCCTCGGGAGGCGGCGGTCCAGC
CAAGCCGAAAACCCCCACATCAGCCAGCAAGAAGGGAAGCCCCGGGAGGG
TGGCGGCGGCGAGCAAGAAGGCCAGCTCGGCCGGAGCATTCAAGAGCAAG
AGCAGCAACAACAAGGGGATAGGCAAGATGACATGGATATTCGGTCTTTC
TTCAGCTCATCCTCGGGAGGCGGCGGTCCAGCCAAGCCGAAAACCCCCAC
ATCAGCCAGCAAGAAGGGAAGCCCCGGGAGGGTGGCGGCGGCGAGCAAGA
AGGCCAGCTCGGCCGGAGCATTCAAGAGCAAGAGCAGCAACAACAAGGGG
ATAGGCAAGATGACGTTTGAGAGAAACTCCAACAGGAATGCTTCGAAAAC
GCACGAGAAGAGCGCAGCGGCCGCCAAAAGTGGTCAAGGCGATGACGACA
ACGACGACGACGACGTCGACGTTGTGCTAGTGGAGCCGCAACCGGCCAAG
AAGAAACCCGCGGCGGCGGCGAAAAAAAAAGCGGCAAGCCCGAAGAGAAA
GTCGAAGACAGCGGTCAAGGGCGAAGCCGGCAGCAGCGATGACAACGAAG
GTGAAGGCGGTGACGTGGAGTTCGTGACATGCAGCGCTAGCCGCGGCGGC
GGCAGCGGCGGCGGCAGCAGAAGGAGGGCCGCGAAGTCGGCGGTCAATTA
CAAGGAAGACGACGAAGACGACGGCGACGGGCAGGGCGGCGGCGGCAGCG
CCGGCGACGACGAGGAGGATGCCTTCAGCGGCGCAGACGCCAGCGATAGC
GAAGCAGACGACGACGACGACGACGACGACGACGACGACGACTTCGTAGA
GGAAGACGACGGTTTGAGAGAAACTCCAACAGGAATGCTTCGAAAACGCA
CGAGAAGAGCGCAGCGGCCGCCAAAAGTGGTCAAGGCGATGACGACAACG
ACGACGACGACGTCGACGTTGTGCTAGTGGAGCCGCAACCGGCCAAGAAG
AAACCCGCGGCGGCGGCGAAAAAAAAAGCGGCAAGCCCGAAGAGAAAGTC
GAAGACAGCGGTCAAGGGCGAAGCCGGCAGCAGCGATGACAACGAAGGTG
AAGGCGGTGACGTGGAGTTCGTGACATGCAGCGCTAGCCGCGGCGGCGGC
AGCGGCGGCGGCAGCAGAAGGAGGGCCGCGAAGTCGGCGGTCAATTACAA
GGAAGACGACGAAGACGACGGCGACGGGCAGGGCGGCGGCGGCAGCGCCG
GCGACGACGAGGAGGATGCCTTCAGCGGCGCAGACGCCAGCGATAGCGAA
GCAGACGACGACGACGACGACGACGACGACGACGACGACTTCGTAGAGGA
AGACGACGCGTAACGTAA
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