mRNA_P-fluviatile_contig1.437.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.437.1
Unique NamemRNA_P-fluviatile_contig1.437.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4911540..4912161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size622
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.437.1prot_P-fluviatile_contig1.437.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4911637..4912074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.4475791-UTR-P-fluviatile_contig1:4911539..49116361622815270.4475791-UTR-P-fluviatile_contig1:4911539..4911636Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4911540..4911636 +
1693561322.7473505-UTR-P-fluviatile_contig1:4911539..49116361693561322.7473505-UTR-P-fluviatile_contig1:4911539..4911636Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4911540..4911636 +
1622815270.4850814-UTR-P-fluviatile_contig1:4912074..49121611622815270.4850814-UTR-P-fluviatile_contig1:4912074..4912161Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4912075..4912161 +
1693561322.7976966-UTR-P-fluviatile_contig1:4912074..49121611693561322.7976966-UTR-P-fluviatile_contig1:4912074..4912161Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4912075..4912161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.4620607-CDS-P-fluviatile_contig1:4911636..49120741622815270.4620607-CDS-P-fluviatile_contig1:4911636..4912074Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4911637..4912074 +
1693561322.7825072-CDS-P-fluviatile_contig1:4911636..49120741693561322.7825072-CDS-P-fluviatile_contig1:4911636..4912074Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4911637..4912074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.437.1

>prot_P-fluviatile_contig1.437.1 ID=prot_P-fluviatile_contig1.437.1|Name=mRNA_P-fluviatile_contig1.437.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=146bp
MARKKQGKGRGMPMNVSRPTRVGQPPSKGPTKRDPEATSSNLGVEKLLTW
NSPKITKNSLRRVLRSHFLISSCQSDVLPITTCIKFIQSKPKASHLLGDF
SLRPVKVLQRPVRLLLRRGMKGAAGVDALLLPARLLLFTGPTHGG*
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mRNA from alignment at P-fluviatile_contig1:4911540..4912161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.437.1 ID=mRNA_P-fluviatile_contig1.437.1|Name=mRNA_P-fluviatile_contig1.437.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=622bp|location=Sequence derived from alignment at P-fluviatile_contig1:4911540..4912161+ (Porterinema fluviatile SAG_2381)
ACGTGATTCTTGAATCCCCCCGACACCGCGTTAATTGAACGCGCGTGTCC
ATCGGGACCCACGATCCCCCGATCCACCCTACCCACCCACCTTGCTAATG
GCGAGGAAAAAACAGGGAAAGGGGCGGGGGATGCCGATGAATGTTTCCAG
GCCTACAAGAGTTGGCCAGCCGCCATCAAAAGGGCCAACAAAACGCGATC
CCGAAGCCACAAGCAGCAATCTAGGCGTAGAGAAACTCCTAACTTGGAAC
TCTCCAAAAATCACAAAGAACTCTCTGCGTCGAGTCCTGCGTTCTCACTT
TCTTATCTCCTCTTGTCAAAGCGATGTATTACCGATCACCACCTGTATAA
AATTCATTCAATCAAAGCCCAAGGCTTCTCATCTTCTCGGCGATTTCTCG
CTGCGCCCGGTCAAAGTCCTCCAGCGACCTGTTAGGCTGCTCTTGCGGCG
CGGGATGAAAGGCGCCGCAGGCGTTGACGCGTTGTTGTTGCCGGCGAGGT
TGTTGTTGTTCACGGGTCCAACGCATGGTGGGTAAATGGTGGTGGTGGTG
GTGGTGGTGGTGGTGACGGTGGAGGAATTGCGGCAGCGTAGCGGCAGAAG
CAGCAGCGGCGGCACAGATCCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4911540..4912161+

>mRNA_P-fluviatile_contig1.437.1 ID=mRNA_P-fluviatile_contig1.437.1|Name=mRNA_P-fluviatile_contig1.437.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=876bp|location=Sequence derived from alignment at P-fluviatile_contig1:4911540..4912161+ (Porterinema fluviatile SAG_2381)
ATGGCGAGGAAAAAACAGGGAAAGGGGCGGGGGATGCCGATGAATGTTTC
CAGGCCTACAAGAGTTGGCCAGCCGCCATCAAAAGGGCCAACAAAACGCG
ATCCCGAAGCCACAAGCAGCAATCTAGGCGTAGAGAAACTCCTAACTTGG
AACTCTCCAAAAATCACAAAGAACTCTCTGCGTCGAGTCCTGCGTTCTCA
CTTTCTTATCTCCTCTTGTCAAAGCGATGTATTACCGATCACCACCTGTA
TAAAATTCATTCAATCAAAGCCCAAGGCTTCTCATCTTCTCGGCGATTTC
TCGCTGCGCCCGGTCAAAGTCCTCCAGCGACCTGTTAGGCTGCTCTTGCG
GCGCGGGATGAAAGGCGCCGCAGGCGTTGACGCGTTGTTGTTGCCGGCGA
GGTTGTTGTTGTTCACGGGTCCAACGCATGGTGGGTAAATGGCGAGGAAA
AAACAGGGAAAGGGGCGGGGGATGCCGATGAATGTTTCCAGGCCTACAAG
AGTTGGCCAGCCGCCATCAAAAGGGCCAACAAAACGCGATCCCGAAGCCA
CAAGCAGCAATCTAGGCGTAGAGAAACTCCTAACTTGGAACTCTCCAAAA
ATCACAAAGAACTCTCTGCGTCGAGTCCTGCGTTCTCACTTTCTTATCTC
CTCTTGTCAAAGCGATGTATTACCGATCACCACCTGTATAAAATTCATTC
AATCAAAGCCCAAGGCTTCTCATCTTCTCGGCGATTTCTCGCTGCGCCCG
GTCAAAGTCCTCCAGCGACCTGTTAGGCTGCTCTTGCGGCGCGGGATGAA
AGGCGCCGCAGGCGTTGACGCGTTGTTGTTGCCGGCGAGGTTGTTGTTGT
TCACGGGTCCAACGCATGGTGGGTAA
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