mRNA_P-fluviatile_contig1.421.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.421.1
Unique NamemRNA_P-fluviatile_contig1.421.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4756372..4756915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.3431845-UTR-P-fluviatile_contig1:4756371..47565671622815270.3431845-UTR-P-fluviatile_contig1:4756371..4756567Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4756372..4756567 +
1693561322.6883314-UTR-P-fluviatile_contig1:4756371..47565671693561322.6883314-UTR-P-fluviatile_contig1:4756371..4756567Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4756372..4756567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.3540692-CDS-P-fluviatile_contig1:4756567..47569151622815270.3540692-CDS-P-fluviatile_contig1:4756567..4756915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4756568..4756915 +
1693561322.7045739-CDS-P-fluviatile_contig1:4756567..47569151693561322.7045739-CDS-P-fluviatile_contig1:4756567..4756915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4756568..4756915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.421.1prot_P-fluviatile_contig1.421.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4756568..4756915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.421.1

>prot_P-fluviatile_contig1.421.1 ID=prot_P-fluviatile_contig1.421.1|Name=mRNA_P-fluviatile_contig1.421.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=116bp
MEFKILVNTAASPKRCLAHGLLETQRLRWTSERSHATLPKMVLLRVKVRT
RSHNINVVPRNTISHPLLLNTHANTVRWLPSPLRTFIHRRRDAWSVANDL
AKQQINPHPPSSTLPS
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mRNA from alignment at P-fluviatile_contig1:4756372..4756915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.421.1 ID=mRNA_P-fluviatile_contig1.421.1|Name=mRNA_P-fluviatile_contig1.421.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=544bp|location=Sequence derived from alignment at P-fluviatile_contig1:4756372..4756915+ (Porterinema fluviatile SAG_2381)
GCACATATTTCAACCTGGTCGTACACTATGCTTACTCCGACTTTTGCGGC
AAGGTTGTGGAGCAGCGAAGTTCTACTGCCCCCGCAAACTTCCCGCACAC
GCGCACATCACCCGCGGACGGATGACATTGGTGCTTGCTTGCTCTCGTCT
TGAGAATATTTCGTGAGGGATATGCGAAATTCTCGAAGAGATTGAGATGG
AGTTCAAAATTTTGGTGAATACAGCTGCATCACCTAAAAGATGTCTCGCG
CACGGACTACTCGAAACTCAAAGGCTGAGATGGACAAGCGAAAGAAGCCA
TGCAACTTTGCCTAAAATGGTGTTACTTAGGGTTAAGGTTAGGACCAGGA
GCCATAACATCAATGTCGTTCCACGAAACACAATTTCTCACCCGCTTCTA
CTAAATACACACGCAAACACAGTACGCTGGCTCCCCTCCCCCTTAAGAAC
GTTTATCCATCGCAGAAGGGATGCGTGGTCAGTAGCCAACGACCTAGCCA
AGCAACAAATAAACCCCCACCCCCCATCGTCAACCCTGCCCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4756372..4756915+

>mRNA_P-fluviatile_contig1.421.1 ID=mRNA_P-fluviatile_contig1.421.1|Name=mRNA_P-fluviatile_contig1.421.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=696bp|location=Sequence derived from alignment at P-fluviatile_contig1:4756372..4756915+ (Porterinema fluviatile SAG_2381)
ATGGAGTTCAAAATTTTGGTGAATACAGCTGCATCACCTAAAAGATGTCT
CGCGCACGGACTACTCGAAACTCAAAGGCTGAGATGGACAAGCGAAAGAA
GCCATGCAACTTTGCCTAAAATGGTGTTACTTAGGGTTAAGGTTAGGACC
AGGAGCCATAACATCAATGTCGTTCCACGAAACACAATTTCTCACCCGCT
TCTACTAAATACACACGCAAACACAGTACGCTGGCTCCCCTCCCCCTTAA
GAACGTTTATCCATCGCAGAAGGGATGCGTGGTCAGTAGCCAACGACCTA
GCCAAGCAACAAATAAACCCCCACCCCCCATCGTCAACCCTGCCCTCCAT
GGAGTTCAAAATTTTGGTGAATACAGCTGCATCACCTAAAAGATGTCTCG
CGCACGGACTACTCGAAACTCAAAGGCTGAGATGGACAAGCGAAAGAAGC
CATGCAACTTTGCCTAAAATGGTGTTACTTAGGGTTAAGGTTAGGACCAG
GAGCCATAACATCAATGTCGTTCCACGAAACACAATTTCTCACCCGCTTC
TACTAAATACACACGCAAACACAGTACGCTGGCTCCCCTCCCCCTTAAGA
ACGTTTATCCATCGCAGAAGGGATGCGTGGTCAGTAGCCAACGACCTAGC
CAAGCAACAAATAAACCCCCACCCCCCATCGTCAACCCTGCCCTCC
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