mRNA_P-fluviatile_contig1.41.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.41.1
Unique NamemRNA_P-fluviatile_contig1.41.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Match: D7FXA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA3_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 6.560e-82
Identity = 142/226 (62.83%), Postives = 166/226 (73.45%), Query Frame = 1 
Query:    1 QVGFRDDTSYIAAHYGGRKIRQPAPGSSNAGPDDTAQRTTPPASRTQTTPTQPADT--TRQHLHGVAVKESLSQKEVRRSIANGAS-VRPTLSEQLATIGKAAEDITAGIRQSYGLK-LEGAMLTVPSESFFVGRLRCKYPSPVHFFTHKCVYIFHHPFEATRITMEMFFRDMRCAILDLPRRQLRFKIDHPLCHYGRDYCHEDPSHFVVVQFSSDFDSKRVTEKV 666
            QVGFRDDTSY+ AHYGGR  R+    +++  P    ++ +P  S+   T    A T  +R    GV +    +     R+   G   VRPTLSEQLA+IGKAAEDITAGIR+S+GLK LEGA+LT PSESF VG+LRCKYPSPV FF HKCVY FHHPFEATRITMEMFFRDMR A LD PRR+LRFKIDHPLCHY +DY H+DPSHFVV+QFSS  D++RV EKV
Sbjct:    8 QVGFRDDTSYLTAHYGGRSPRRTTRVTTHGIPRP-PEKASPVGSQADPTVKSIAPTRGSRPASTGVVIARRETIGVGARNAGEGRFLVRPTLSEQLASIGKAAEDITAGIRKSHGLKPLEGAILTTPSESFLVGKLRCKYPSPVAFFNHKCVYTFHHPFEATRITMEMFFRDMRSAALDSPRRELRFKIDHPLCHYTKDYSHDDPSHFVVIQFSSGLDAERVLEKV 232
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BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Match: A0A7S2FRD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FRD3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.600e-29
Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 1 
Query:  253 VRPTLSEQLATIGKAAEDITAGIRQSY------GLKLEGAMLTVPSESFFVGRLRCKYPSPVHFFTHKCVYIFHHPFEATRITMEMFFRDMRCAILDLPRRQLRFKIDHPLCHYGR--DYCHEDPSHFVVVQFSSDFDSKRV 654
            VRP+LSEQLA+IG +A  IT  IR+++      G      +L VP+ +F VG+L C+YPSPV FF  +C YIF+HP E+ +ITMEM++RDMR A+L    R LRFKIDH L  +    DY   D +H++ +  +S  D++ V
Sbjct:   43 VRPSLSEQLASIGASAGSITDEIRKTHKLDDHHGTASGKPLLRVPARAFTVGKLECRYPSPVQFFADQCTYIFNHPHESKQITMEMYYRDMRQAVLSEGTRSLRFKIDHLLDKFTTPGDYNPHDRNHYITIGLASVADARAV 184
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BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Match: A0A6H5K4P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.420e-24
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:  484 MEMFFRDMRCAILDLPRRQLRFKIDHPLCHYGRDYCHEDPSHFVVVQFSSDFDSKRVTEKV 666
            MEMFFRDMR A+LD  RR+LRFKIDHPLCHY +DY H DPSHFVV+QFSS  D+ RV EK+
Sbjct:    1 MEMFFRDMRSAVLDHRRRELRFKIDHPLCHYTKDYSHNDPSHFVVIQFSSGLDADRVLEKI 61
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BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Match: A0A1V9YA22_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA22_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.020e-20
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:  253 VRPTLSEQLATIGKAAEDITAGIRQSYGLKLEGAMLTVPSESFFVGRLRCKYPSPVHFFTHKCVYIFHHPFEATR-ITMEMFFRDMRCAILDLPRRQLRFKIDHPLCHYGRDYCHEDPSHFVVVQFSSDFDSKRV 654
            +RP+LSEQLATIG+ A+ +   + +      +   LTVP+ +  VGRL CK+PSPVHF    C Y F     A+R I M M++RDM     +     L+FKI H L  +G DY H +P+H+VV+ F+S  D +RV
Sbjct:   69 MRPSLSEQLATIGQQAQSLVNALSREAPASTK---LTVPTATMTVGRLECKFPSPVHFEDAVCRYQF---LVASRDIAMYMYYRDMTHVTFEQRSWSLKFKIAHALDQFGSDYDHTNPNHYVVIGFASMSDWRRV 197
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BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Match: A0A6G0WIX3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WIX3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.180e-16
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 1 
Query:  256 RPTLSEQLATIGKAAEDITAGIRQSYG---LKLEGAMLTVPSESFFVGRLRCKYPSPVHFFTHKCVYIFHHPFEATRITMEMFFRDMRCAILDLPRRQLRFKIDHPLCHYGRDYCHEDPSHFVVVQFSSDFDSKRV 654
            RP+LS+QLA+IG  AE +   +++      +      + +P+    VGRL CK+PSP+ FF   C Y F H      I M M++RDM    ++  R  LRF+I H L  +G DY + + +H + + F+S  D  RV
Sbjct:   71 RPSLSDQLASIGLQAESVARSLKKRTNDDEMTSNVERMRLPTLRMVVGRLECKFPSPIVFFDQLCRYQFVHG--GRDIAMYMYYRDMTDISMEKKRLTLRFRIPHALAQFGADYDYHNQNHAIEIGFASQTDWNRV 204
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BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Match: A0A485KAI9_9STRA (Aste57867_1521 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAI9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.600e-11
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:  265 LSEQLATIGKAAEDITAGIRQSYGLKLEGAMLTVPSESFFVGRLRCKYPSPVHFFTHKCVYIFHHPFEATRITMEMFFRDMRCAILDLPRRQLRFKIDHPLCHYGR-DYCHEDPSHFVVVQFSSDFDSKR 651
            LS+QLA+IG +A+ +   + +     L     T+P+    VGRL CK+PSPV F  H   Y F H      I M M+F+DM      LP   ++FKI HPL  +   DY H + +H + + F+S  D  R
Sbjct:   81 LSDQLASIGASAQALVDSLSKPTNDPLS---FTLPTLRLVVGRLECKFPSPVSFSPHLLRYQFLHG--GHDIAMLMYFQDMVDVTFHLPSLSVKFKIPHPLTEFAHGDYDHLNRNHMLHIGFASATDLAR 205
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BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Match: A0A1W0A1J9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1J9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.230e-5
Identity = 40/104 (38.46%), Postives = 52/104 (50.00%), Query Frame = 1 
Query:  199 KESLSQKEVRRSIANGASVRPTLSEQLATI-GKAAEDITAGIRQSYGLKLEGAMLTVPSESFFVGRLRCKYPSPVHFFTHKCVYIFHHPFEATRITMEMFFRDM 507
            KE +     +  I      RP+LS+QLA I GK  + +    R+  G       LTVP+ S  VGRL CK+PSPVHF    C Y F     +  I M M++ DM
Sbjct:   44 KEKVIPSTAQNDILPSKRQRPSLSQQLALISGKTQQLVDTLQRKDVG----SGKLTVPTASMTVGRLECKFPSPVHFEDKVCRYQF--MTSSRDIAMFMYYCDM 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FXA3_ECTSI6.560e-8262.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FRD3_9STRA1.600e-2946.48Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6H5K4P7_9PHAE3.420e-2473.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9YA22_9STRA1.020e-2042.96Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0WIX3_9STRA3.180e-1636.03Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KAI9_9STRA3.600e-1136.92Aste57867_1521 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1W0A1J9_9STRA2.230e-538.46Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:700756..702445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue7.7e-67
Seed eggNOG ortholog2880.D7FXA3
EggNOG OGs2E32A@1,2SA7F@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004610.1
Exons4
Model size666
Cds size666
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.41.1prot_P-fluviatile_contig1.41.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 700756..702445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815278.118148-CDS-P-fluviatile_contig1:700755..7009441622815278.118148-CDS-P-fluviatile_contig1:700755..700944Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 700756..700944 -
1693561376.9817634-CDS-P-fluviatile_contig1:700755..7009441693561376.9817634-CDS-P-fluviatile_contig1:700755..700944Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 700756..700944 -
1622815278.1335807-CDS-P-fluviatile_contig1:701381..7014571622815278.1335807-CDS-P-fluviatile_contig1:701381..701457Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 701382..701457 -
1693561377.1735458-CDS-P-fluviatile_contig1:701381..7014571693561377.1735458-CDS-P-fluviatile_contig1:701381..701457Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 701382..701457 -
1622815278.1462653-CDS-P-fluviatile_contig1:701732..7018191622815278.1462653-CDS-P-fluviatile_contig1:701732..701819Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 701733..701819 -
1693561377.1885262-CDS-P-fluviatile_contig1:701732..7018191693561377.1885262-CDS-P-fluviatile_contig1:701732..701819Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 701733..701819 -
1622815278.1587873-CDS-P-fluviatile_contig1:702131..7024451622815278.1587873-CDS-P-fluviatile_contig1:702131..702445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 702132..702445 -
1693561377.197302-CDS-P-fluviatile_contig1:702131..7024451693561377.197302-CDS-P-fluviatile_contig1:702131..702445Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 702132..702445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.41.1

>prot_P-fluviatile_contig1.41.1 ID=prot_P-fluviatile_contig1.41.1|Name=mRNA_P-fluviatile_contig1.41.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=222bp
QVGFRDDTSYIAAHYGGRKIRQPAPGSSNAGPDDTAQRTTPPASRTQTTP
TQPADTTRQHLHGVAVKESLSQKEVRRSIANGASVRPTLSEQLATIGKAA
EDITAGIRQSYGLKLEGAMLTVPSESFFVGRLRCKYPSPVHFFTHKCVYI
FHHPFEATRITMEMFFRDMRCAILDLPRRQLRFKIDHPLCHYGRDYCHED
PSHFVVVQFSSDFDSKRVTEKV
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mRNA from alignment at P-fluviatile_contig1:700756..702445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.41.1 ID=mRNA_P-fluviatile_contig1.41.1|Name=mRNA_P-fluviatile_contig1.41.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1690bp|location=Sequence derived from alignment at P-fluviatile_contig1:700756..702445- (Porterinema fluviatile SAG_2381)
CAGGTTGGATTTCGAGACGATACGAGCTACATCGCGGCACACTACGGTGG
ACGGAAAATAAGGCAGCCCGCTCCGGGATCATCTAACGCGGGCCCTGATG
ACACCGCACAGCGCACTACGCCGCCCGCCAGCAGAACACAAACCACCCCG
ACCCAACCGGCTGACACAACGAGGCAGCATCTTCATGGCGTTGCAGTGAA
GGAGAGTTTGAGCCAGAAGGAGGTACGGCGGTCAATAGCGAACGGCGCTT
CGGTGAGGCCTACGTTAAGCGAGCAGCTCGCGACCATCGGAAAGGCTGCA
GAGGATATCACCGCGTGAGAATGCTTTCATGGCCACCCGTTCGGAACACC
AACACTTCTTCCGATTTTCATCATATCCGGTGTCTTTGTAGTTTGATAAC
TTCTCGCGGTCTTACCGCAGCATGAGGGGGCGGGGGGCATGATAGGGGAA
TAGGGCCGTACTTAATTGAATCTATTCACTTGCACCTTTTTCGTAGTCCG
TGAGCCTGTACAGGACGCGTAATGACGGATCGTCAGCCCGAAATATGGCA
AAGGAGAAGCCTTAAATTAACCTTTGAAAAAATCCTTCTCAAGACGTTGC
CCACATCGCCATTTTTGGGATTTCAGGGGCATTCGCCAGTCCTACGGCTT
GAAACTGGAAGGCGCGATGCTCACCGTGCCATCGGAGAGCTTCTTTGTCG
GAAGATTGCGGTGGTACGTCCTGATCGGGTTGATCATGGCATTGTTGTAA
ACCACAGCGCTTTGTGAATTGGCGCAATGAGCTTTTTGAAGTTGCAAACG
ATCGTTTGTTCAATTTGGAGTCTGCGTGTCTTCTGTGTGCTACCTCGGAG
AAACATATTTTACCGATATTTCGGTGGTTTCTCCTGTGTACGAGTGCTTG
CCTTGCTTTCGTCCAACATGATTCTGAATCTACCATGTTCTGCATTTCCC
CCCGGCCGTTGCCCCGTTTCTGCTCACTAATAGCGCAGCAAGTACCCGTC
GCCGGTTCACTTTTTTACGCACAAGTGCGTCTACATCTTTCACCACCCGT
TTGAGGCTACCAGGGTGAGGGCAAAGTCGCACGACCCTCTGTCGGCAAAT
TCGCCGAGGAACCTGACGGATTGATTCAGCTTCAGGGTTGCGCCTGCAAT
ACTAGGGAGCGCTAAGGGTATCGATGTACTATGCGCGAGTCATAAAAGCA
TGTGAGACGGATGTTTCGAACCTATCCTAGCTGAAATCCCTCACAGTGCA
ATTGACCATCACCATATTTTTTTCGAAGGTGGGTTTTCAGACAGCGTTTC
GAAAACGTATCTGAAACTGTATTGTACGCAGGTGGTGCCAATGCGTAGCA
ATACACGCCGCCTGAACCGCAAATGATCACGCTTTCTTTGACGAGGAGTA
GTGGAAACAAAGAGCGTTTTCCCCGGTTGATATATTTCCCTCTCGAAACG
ACGCACGCCCGAAGCTGGACACGCACCAACCAAATAAACGCTTTCGTCCA
GATAACAATGGAGATGTTCTTCCGCGACATGCGGTGCGCCATACTGGACT
TGCCGCGCCGACAGCTTCGGTTCAAGATCGACCACCCGCTGTGCCACTAC
GGCAGGGACTATTGTCACGAAGACCCGTCGCACTTTGTTGTGGTGCAATT
CAGCTCCGATTTCGACTCTAAGCGAGTAACAGAGAAGGTA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:700756..702445-

>mRNA_P-fluviatile_contig1.41.1 ID=mRNA_P-fluviatile_contig1.41.1|Name=mRNA_P-fluviatile_contig1.41.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1332bp|location=Sequence derived from alignment at P-fluviatile_contig1:700756..702445- (Porterinema fluviatile SAG_2381)
CAGGTTGGATTTCGAGACGATACGAGCTACATCGCGGCACACTACGGTGG
ACGGAAAATAAGGCAGCCCGCTCCGGGATCATCTAACGCGGGCCCTGATG
ACACCGCACAGCGCACTACGCCGCCCGCCAGCAGAACACAAACCACCCCG
ACCCAACCGGCTGACACAACGAGGCAGCATCTTCATGGCGTTGCAGTGAA
GGAGAGTTTGAGCCAGAAGGAGGTACGGCGGTCAATAGCGAACGGCGCTT
CGGTGAGGCCTACGTTAAGCGAGCAGCTCGCGACCATCGGAAAGGCTGCA
GAGGATATCACCGCCAGGTTGGATTTCGAGACGATACGAGCTACATCGCG
GCACACTACGGTGGACGGAAAATAAGGCAGCCCGCTCCGGGATCATCTAA
CGCGGGCCCTGATGACACCGCACAGCGCACTACGCCGCCCGCCAGCAGAA
CACAAACCACCCCGACCCAACCGGCTGACACAACGAGGCAGCATCTTCAT
GGCGTTGCAGTGAAGGAGAGTTTGAGCCAGAAGGAGGTACGGCGGTCAAT
AGCGAACGGCGCTTCGGTGAGGCCTACGTTAAGCGAGCAGCTCGCGACCA
TCGGAAAGGCTGCAGAGGATATCACCGCGGGCATTCGCCAGTCCTACGGC
TTGAAACTGGAAGGCGCGATGCTCACCGTGCCATCGGAGAGCTTCTTTGT
CGGAAGATTGCGGTGGGGCATTCGCCAGTCCTACGGCTTGAAACTGGAAG
GCGCGATGCTCACCGTGCCATCGGAGAGCTTCTTTGTCGGAAGATTGCGG
TGCAAGTACCCGTCGCCGGTTCACTTTTTTACGCACAAGTGCGTCTACAT
CTTTCACCACCCGTTTGAGGCTACCAGGCAAGTACCCGTCGCCGGTTCAC
TTTTTTACGCACAAGTGCGTCTACATCTTTCACCACCCGTTTGAGGCTAC
CAGGATAACAATGGAGATGTTCTTCCGCGACATGCGGTGCGCCATACTGG
ACTTGCCGCGCCGACAGCTTCGGTTCAAGATCGACCACCCGCTGTGCCAC
TACGGCAGGGACTATTGTCACGAAGACCCGTCGCACTTTGTTGTGGTGCA
ATTCAGCTCCGATTTCGACTCTAAGCGAGTAACAGAGAAGGTAATAACAA
TGGAGATGTTCTTCCGCGACATGCGGTGCGCCATACTGGACTTGCCGCGC
CGACAGCTTCGGTTCAAGATCGACCACCCGCTGTGCCACTACGGCAGGGA
CTATTGTCACGAAGACCCGTCGCACTTTGTTGTGGTGCAATTCAGCTCCG
ATTTCGACTCTAAGCGAGTAACAGAGAAGGTA
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