mRNA_P-fluviatile_contig1.409.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.409.1
Unique NamemRNA_P-fluviatile_contig1.409.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.409.1 vs. uniprot
Match: A0A6H5JXG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG7_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 6.200e-110
Identity = 182/266 (68.42%), Postives = 203/266 (76.32%), Query Frame = 1 
Query:    1 RRASISRPLSLGGSG-LDGFDPLEEGPDPDDILLQGEPELLRQXXXXXXXXXELAEAAESLTLSEKAPTKMQIAEEAVAAXXXXAQANEHGSGASDNAVMASLDPKRRK-GTRTRIDPLMPRGAVAPNEWKEMDNLEEGVRGILVVCHTGLPRDKKRADQVMKAVKDRFGHVIHTHEWWDDDPELTDDDREETDTFEVWLEGPTVVHYHERANGQAQLDDEQLRKILEDLECRVEDRAILGQYVNEDFQFRLPGFRAAEQRRKQFP 792
            RR    +PL LGG   +D  DPLE GPDPD+ILLQGEPELLRQ  XXXXX  ELA A  +   + K PTK ++AE AV  X     A E G GA D   MA+L PKR+K   + R+DPLMPRG VAPNEW +M NL EGVRGILVVCHTGLP+DKKRA +VM AVK+R+GHVIHTHEWWDDD ELTDDDRE+  TFEVWLEGPTVVHYHERA+G+  LDDEQL KIL+DLE RV D AILGQY+NEDFQFRLPGF   EQR KQFP
Sbjct:  105 RRCRSLQPLGLGGMDEMDDIDPLEGGPDPDEILLQGEPELLRQQQXXXXXEAELAAAEAATVAAGKGPTKAELAEAAVXXXMASKTAGE-GVGA-DEVAMAALGPKRKKRAEKVRVDPLMPRGGVAPNEWLDMANLAEGVRGILVVCHTGLPKDKKRATEVMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTVVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQFP 368
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BLAST of mRNA_P-fluviatile_contig1.409.1 vs. uniprot
Match: D7G5D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D7_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 2.250e-108
Identity = 169/252 (67.06%), Postives = 193/252 (76.59%), Query Frame = 1 
Query:   46 LDGFDPLEEGPDPDDILLQGEPELLRQXXXXXXXXXELAEAAESLTLSEKAPTKMQIAEEAVAAXXXXAQANEHGSGASDNAVMASLDPKRRKGT-RTRIDPLMPRGAVAPNEWKEMDNLEEGVRGILVVCHTGLPRDKKRADQVMKAVKDRFGHVIHTHEWWDDDPELTDDDREETDTFEVWLEGPTVVHYHERANGQAQLDDEQLRKILEDLECRVEDRAILGQYVNEDFQFRLPGFRAAEQRRKQFPVL 798
            ++  DPLE GPDPD+ILLQGEPELLRQ         ELA A  +   + KAPTK ++AE     XXXX    E   G +D A MA+L PKR+K   + RIDPLMPRG VAPNEW +M +L EGVRGILVVCHTGLP+DKKRA ++M AVK+R+GHVIHTHEWWDDD ELTDDDRE+  TFEVWLEGPT+VHYHERA+G+  LDDEQL KIL+DLE RV D AILGQY+NEDFQFRLPGF   EQR KQFPVL
Sbjct:    4 MEDMDPLEAGPDPDEILLQGEPELLRQQQEEEDYEVELAAAEAATVAAGKAPTKAELAEXXXXXXXXXXXXRE--GGGADEAAMAALGPKRKKRVEKARIDPLMPRGGVAPNEWLDMADLAEGVRGILVVCHTGLPKDKKRAAEIMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTIVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQFPVL 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXG7_9PHAE6.200e-11068.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D7_ECTSI2.250e-10867.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4649466..4652451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008690.1
Exons4
Model size801
Cds size801
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.409.1prot_P-fluviatile_contig1.409.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4649466..4652451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.6883223-CDS-P-fluviatile_contig1:4649465..46496601622815331.6883223-CDS-P-fluviatile_contig1:4649465..4649660Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4649466..4649660 +
1693561524.9805717-CDS-P-fluviatile_contig1:4649465..46496601693561524.9805717-CDS-P-fluviatile_contig1:4649465..4649660Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4649466..4649660 +
1622815331.6973023-CDS-P-fluviatile_contig1:4649990..46502211622815331.6973023-CDS-P-fluviatile_contig1:4649990..4650221Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4649991..4650221 +
1693561524.988623-CDS-P-fluviatile_contig1:4649990..46502211693561524.988623-CDS-P-fluviatile_contig1:4649990..4650221Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4649991..4650221 +
1622815331.7060533-CDS-P-fluviatile_contig1:4651154..46512441622815331.7060533-CDS-P-fluviatile_contig1:4651154..4651244Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4651155..4651244 +
1693561525.0038352-CDS-P-fluviatile_contig1:4651154..46512441693561525.0038352-CDS-P-fluviatile_contig1:4651154..4651244Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4651155..4651244 +
1622815331.7202015-CDS-P-fluviatile_contig1:4652166..46524511622815331.7202015-CDS-P-fluviatile_contig1:4652166..4652451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4652167..4652451 +
1693561525.0157115-CDS-P-fluviatile_contig1:4652166..46524511693561525.0157115-CDS-P-fluviatile_contig1:4652166..4652451Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4652167..4652451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.409.1

>prot_P-fluviatile_contig1.409.1 ID=prot_P-fluviatile_contig1.409.1|Name=mRNA_P-fluviatile_contig1.409.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=267bp
RRASISRPLSLGGSGLDGFDPLEEGPDPDDILLQGEPELLRQQQEEEEYE
EELAEAAESLTLSEKAPTKMQIAEEAVAAAAAAAQANEHGSGASDNAVMA
SLDPKRRKGTRTRIDPLMPRGAVAPNEWKEMDNLEEGVRGILVVCHTGLP
RDKKRADQVMKAVKDRFGHVIHTHEWWDDDPELTDDDREETDTFEVWLEG
PTVVHYHERANGQAQLDDEQLRKILEDLECRVEDRAILGQYVNEDFQFRL
PGFRAAEQRRKQFPVL*
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mRNA from alignment at P-fluviatile_contig1:4649466..4652451+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.409.1 ID=mRNA_P-fluviatile_contig1.409.1|Name=mRNA_P-fluviatile_contig1.409.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2986bp|location=Sequence derived from alignment at P-fluviatile_contig1:4649466..4652451+ (Porterinema fluviatile SAG_2381)
CGCCGTGCTTCGATTTCGCGGCCGCTCTCGTTGGGCGGCAGCGGCCTGGA
CGGCTTCGACCCGCTGGAGGAGGGGCCCGACCCGGACGACATCTTGCTGC
AGGGGGAGCCGGAGCTGCTGAGGCAGCAGCAGGAAGAAGAGGAGTACGAA
GAGGAGCTGGCGGAGGCGGCAGAATCGTTGACTCTTTCCGAAAAGGTGTG
CCACATCTGTCGGCCAAGGTTTGTAAGCAGATGACTTTTTGAGCAGGACT
ATTGTAAAGTATGTCTCGTGAGGCTAGAGACAGAGGGGAAGGGGGGCTGC
AGGAATTCTTTTGTCAAATTGGTGTTCGAGCAGGGGGGGTCGTGGCTTCG
TCACGAGCGTAGCAGGAACATTATCGATATGTCTGGGACACGTGAGCTCA
GTGGCTGATTGCTGGGAGGAGTGCCTTCATCTTTTTGCCTTGTTTCGCCT
GTTTTGCTTTTCCACTGCTGCCATTTTCACCTCCTTTCCCTCTCCAATCT
CTTTGTTCTTTGGAACAAACGAAAGGCGCCGACGAAGATGCAGATAGCGG
AGGAGGCGGTGGCGGCCGCGGCCGCGGCCGCCCAGGCGAATGAGCACGGG
AGTGGAGCTTCCGACAACGCAGTGATGGCGTCGCTCGACCCCAAAAGGAG
AAAAGGCACAAGGACAAGGATCGACCCGCTCATGCCCAGAGGGGCGGTTG
CGCCAAACGAGTGGAAGGAGATGGACAACCTCGAGGAGGGTGTTCGAGGA
ATTTTGGTGAGCACCACCAGCAAATACATTTGGTTGCTGGCATGGCATCC
ATGGGCAAGACAGAGGGGAAGGGATGCGGGGCGTGCTCGCTCATGTCTGG
CCGCGGGTGTTTGGCCAGAGACCACGCATTTCGTCTGAGCTCGGCGCAGG
GAGGCGGGCGACCGCCTCAAGCCTTCTGATTTTTCTCCCTCTGAAATCGG
CCCGGAATATCCGTAGGGAGGAGGGGAGGAGGTAGGTCCGCCTTTTCACT
TCCTTCGTTTGAAGGGCGACGCGGGGCAGCGGGCGCGTGCTTGCGATTAG
TCATGTCTTTGATGAAAGAGGGGTCTCAGGCTGACGGGGTATACATTTCT
GAATGTGTGTTTGGCCCCGCCCGATAATTGGAACACCCGCTGTCATGCGC
GGTTGCTGTAGAGAAATCGAATGAAATCAGCATTCTTTGTTCAGGTTCAT
CGATCTTGCACAACAAGCGCTCCCCCCGTCCCCCTCCGCTCTGCCCCTCC
TCGCAAATTACTCGTCTCTCCCGTCCCTTCGCGAATATGTCGCACATTCC
AATCCAGAGATGACTTGACAAGATTAGTTGCCGATTTCCGCGCCGATAGG
CGTGTATACTTTCGAGGTTGATCGATTGTGCATCGGTCGGAAGTTGTTCC
TACACCTGACCTTCGTGCTTGAACGGAAGGCCATCGTGCGTGCGTTGTTT
TCAGCCCTCGATAAAGCCAAGCAGCGGGCCGGGAATGATATTTGACACCC
ACAAGCTGCCTGTGGAAGTCACAAGCCTTGCAACCGGCTTTAAAGCAAGA
ACAAGTTCTACCATACCCCCCGCCATTCACTGGAACTTCAGTTTTATTGA
AACCCTCCTCGCGCGGTCGGTTTCGAAATATCGTCGGCGACGTCTCTTCT
TGGCCCACGCCACGCCCGATACGCTCGAATCCACTCCAGGTGGTGTGTCA
CACGGGCTTGCCACGAGATAAGAAGAGGGCGGATCAAGTGATGAAGGCGG
TGAAGGATCGCTTCGGCCACGTTATACACGTAAGAACGCAGAAGCGTCGA
GACACCAGACCCCGTTGTTGTCGATGCAGAGCACGGTCCTCGTTGCTTCG
CGTCATGTTCTACGGCATGTGTGCGGGTCTTGAGCGCAGTTTTTCCCCTG
AGGGAGATGGAGAGCGACAAACAAATTAAAAGAGAGTCAGAGAGAGTGGG
AGACAGAGAAAGGTCAGTTTTGTTGACTCTATATCCTTTGTGTCGCTTGA
ACAACATCCGCCATTCGAAGCAGAGTTTGACATCAAAGACAGGGACCATG
AAGACTGAAAAAAACCTTTGAGGACTCCTAGGAATCCAAAGTTCGTGCAC
GCGTTCCGTGTACACGGGTCCTCTGCCGCAACCCTAACGAATTGTTACCG
CAAGTGCTCCCCACGACTTCTACGCACCCAGAGATGATCTGAAGGAGGAG
AAATTAGTGCTGCGTAGCGTCGATGCTTTTTGTAGTCCGCACCACGAAGC
GACGGGCTTGAACCTTGAGGACTCTCACGCCATACCATTGTGGCCGTCGT
GAAGTTCGAACGCGGAAGGGGAAGCAAATCATTAGAATTCGCAGCGCCGC
TTGACTCTCTCCCGATAAGGTTCGCTGGTTCTAGTGAAGTGGGGTTTGGC
GAGTTTGGGGTAATCAGTGGCCTCCTGTGTCTTCACAGAGTAACCTGACG
ATTCGATCTATTCACGACACATCATTCACTAAAAAAATCAAATCAATCTC
GCATTCGATCTACAAAGCATATGAATTTGTCGGATGTTTTATTCTCCGCC
GGTGACTAGAAAATATGGAAAAGGTCTGTAAGGAATCCACGAAACACCAC
TCGTCATTCCCGGCGCGTGACGTCTCATTCCCGTTGCCGAAGTTCTGAAT
GTTTTTTCTTTCAAACAACTCGGGCGGGGGCTCGAAATCGTCCAAACGCA
GACGCACGAGTGGTGGGACGATGACCCGGAGCTGACCGACGACGACCGCG
AGGAAACGGACACCTTCGAAGTGTGGCTCGAGGGCCCCACCGTGGTGCAC
TACCACGAGAGGGCCAACGGGCAGGCGCAGCTGGACGACGAGCAGCTGCG
GAAGATCCTCGAGGACCTCGAGTGCCGCGTCGAGGACCGAGCCATCCTCG
GGCAGTACGTCAACGAGGACTTCCAGTTCAGGCTGCCGGGCTTCAGGGCC
GCCGAGCAGCGGCGCAAGCAATTCCCCGTGCTTTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4649466..4652451+

>mRNA_P-fluviatile_contig1.409.1 ID=mRNA_P-fluviatile_contig1.409.1|Name=mRNA_P-fluviatile_contig1.409.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1602bp|location=Sequence derived from alignment at P-fluviatile_contig1:4649466..4652451+ (Porterinema fluviatile SAG_2381)
CGCCGTGCTTCGATTTCGCGGCCGCTCTCGTTGGGCGGCAGCGGCCTGGA
CGGCTTCGACCCGCTGGAGGAGGGGCCCGACCCGGACGACATCTTGCTGC
AGGGGGAGCCGGAGCTGCTGAGGCAGCAGCAGGAAGAAGAGGAGTACGAA
GAGGAGCTGGCGGAGGCGGCAGAATCGTTGACTCTTTCCGAAAAGCGCCG
TGCTTCGATTTCGCGGCCGCTCTCGTTGGGCGGCAGCGGCCTGGACGGCT
TCGACCCGCTGGAGGAGGGGCCCGACCCGGACGACATCTTGCTGCAGGGG
GAGCCGGAGCTGCTGAGGCAGCAGCAGGAAGAAGAGGAGTACGAAGAGGA
GCTGGCGGAGGCGGCAGAATCGTTGACTCTTTCCGAAAAGGCGCCGACGA
AGATGCAGATAGCGGAGGAGGCGGTGGCGGCCGCGGCCGCGGCCGCCCAG
GCGAATGAGCACGGGAGTGGAGCTTCCGACAACGCAGTGATGGCGTCGCT
CGACCCCAAAAGGAGAAAAGGCACAAGGACAAGGATCGACCCGCTCATGC
CCAGAGGGGCGGTTGCGCCAAACGAGTGGAAGGAGATGGACAACCTCGAG
GAGGGTGTTCGAGGAATTTTGGCGCCGACGAAGATGCAGATAGCGGAGGA
GGCGGTGGCGGCCGCGGCCGCGGCCGCCCAGGCGAATGAGCACGGGAGTG
GAGCTTCCGACAACGCAGTGATGGCGTCGCTCGACCCCAAAAGGAGAAAA
GGCACAAGGACAAGGATCGACCCGCTCATGCCCAGAGGGGCGGTTGCGCC
AAACGAGTGGAAGGAGATGGACAACCTCGAGGAGGGTGTTCGAGGAATTT
TGGTGGTGTGTCACACGGGCTTGCCACGAGATAAGAAGAGGGCGGATCAA
GTGATGAAGGCGGTGAAGGATCGCTTCGGCCACGTTATACACGTGGTGTG
TCACACGGGCTTGCCACGAGATAAGAAGAGGGCGGATCAAGTGATGAAGG
CGGTGAAGGATCGCTTCGGCCACGTTATACACACGCACGAGTGGTGGGAC
GATGACCCGGAGCTGACCGACGACGACCGCGAGGAAACGGACACCTTCGA
AGTGTGGCTCGAGGGCCCCACCGTGGTGCACTACCACGAGAGGGCCAACG
GGCAGGCGCAGCTGGACGACGAGCAGCTGCGGAAGATCCTCGAGGACCTC
GAGTGCCGCGTCGAGGACCGAGCCATCCTCGGGCAGTACGTCAACGAGGA
CTTCCAGTTCAGGCTGCCGGGCTTCAGGGCCGCCGAGCAGCGGCGCAAGC
AATTCCCCGTGCTTTAGACGCACGAGTGGTGGGACGATGACCCGGAGCTG
ACCGACGACGACCGCGAGGAAACGGACACCTTCGAAGTGTGGCTCGAGGG
CCCCACCGTGGTGCACTACCACGAGAGGGCCAACGGGCAGGCGCAGCTGG
ACGACGAGCAGCTGCGGAAGATCCTCGAGGACCTCGAGTGCCGCGTCGAG
GACCGAGCCATCCTCGGGCAGTACGTCAACGAGGACTTCCAGTTCAGGCT
GCCGGGCTTCAGGGCCGCCGAGCAGCGGCGCAAGCAATTCCCCGTGCTTT
AG
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