mRNA_P-fluviatile_contig1.406.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.406.1
Unique NamemRNA_P-fluviatile_contig1.406.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.406.1 vs. uniprot
Match: D7G7E0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E0_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 6.550e-66
Identity = 116/160 (72.50%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:  172 MSRQEAQAAAKKMHDQQVPDMDPDILRQFKALGPVGKAELKHQARSKIVPDASELGEPNKTPRPLPKNRTREVARAGEVDAQKGFLTQTQLAAFLERRVAAGADAPPPAGLLEDFHISEEDAAVLARYYRAPDIRKHNDVMTARWR*PTR--RSGPKFLS 645
            MSR +AQAAAKKM+DQQVPDM+ DILRQ  A+GPVGKAEL HQ   K+VPDASE+   +KTPRPLPK+RTR VA++GEVDA+KG LTQTQLAAFLERRVA GA +PPPAGLLE+FH+SEEDAAVL RY RAPDIR + DVMTARW  PT    SG +  S
Sbjct:    1 MSRPDAQAAAKKMYDQQVPDMNADILRQAMAMGPVGKAELTHQ---KLVPDASEMVT-SKTPRPLPKDRTRAVAKSGEVDAKKGLLTQTQLAAFLERRVANGAGSPPPAGLLEEFHVSEEDAAVLLRYCRAPDIRMYEDVMTARWHWPTGGGESGSQLTS 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E0_ECTSI6.550e-6672.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4637091..4642876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_003180.1
Exons5
Model size987
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.406.1prot_P-fluviatile_contig1.406.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4637091..4642501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.4799633-CDS-P-fluviatile_contig1:4637090..46372501622815331.4799633-CDS-P-fluviatile_contig1:4637090..4637250Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4637091..4637250 +
1693561524.7189698-CDS-P-fluviatile_contig1:4637090..46372501693561524.7189698-CDS-P-fluviatile_contig1:4637090..4637250Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4637091..4637250 +
1622815331.4911397-CDS-P-fluviatile_contig1:4638468..46385301622815331.4911397-CDS-P-fluviatile_contig1:4638468..4638530Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4638469..4638530 +
1693561524.7296524-CDS-P-fluviatile_contig1:4638468..46385301693561524.7296524-CDS-P-fluviatile_contig1:4638468..4638530Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4638469..4638530 +
1622815331.5076506-CDS-P-fluviatile_contig1:4640869..46409561622815331.5076506-CDS-P-fluviatile_contig1:4640869..4640956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4640870..4640956 +
1693561524.7376833-CDS-P-fluviatile_contig1:4640869..46409561693561524.7376833-CDS-P-fluviatile_contig1:4640869..4640956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4640870..4640956 +
1622815331.5199149-CDS-P-fluviatile_contig1:4641410..46415621622815331.5199149-CDS-P-fluviatile_contig1:4641410..4641562Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4641411..4641562 +
1693561524.7476163-CDS-P-fluviatile_contig1:4641410..46415621693561524.7476163-CDS-P-fluviatile_contig1:4641410..4641562Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4641411..4641562 +
1622815331.5296457-CDS-P-fluviatile_contig1:4642350..46425011622815331.5296457-CDS-P-fluviatile_contig1:4642350..4642501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4642351..4642501 +
1693561524.755611-CDS-P-fluviatile_contig1:4642350..46425011693561524.755611-CDS-P-fluviatile_contig1:4642350..4642501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4642351..4642501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.5395052-UTR-P-fluviatile_contig1:4642501..46428761622815331.5395052-UTR-P-fluviatile_contig1:4642501..4642876Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4642502..4642876 +
1693561524.765913-UTR-P-fluviatile_contig1:4642501..46428761693561524.765913-UTR-P-fluviatile_contig1:4642501..4642876Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4642502..4642876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.406.1

>prot_P-fluviatile_contig1.406.1 ID=prot_P-fluviatile_contig1.406.1|Name=mRNA_P-fluviatile_contig1.406.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=204bp
MGNASSKGGAALRRAAKPATRSRAPSKTDPPIGSQFPVEDDLLAKFQPKK
GERSVVEMSRQEAQAAAKKMHDQQVPDMDPDILRQFKALGPVGKAELKHQ
ARSKIVPDASELGEPNKTPRPLPKNRTREVARAGEVDAQKGFLTQTQLAA
FLERRVAAGADAPPPAGLLEDFHISEEDAAVLARYYRAPDIRKHNDVMTA
RWR*
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mRNA from alignment at P-fluviatile_contig1:4637091..4642876+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.406.1 ID=mRNA_P-fluviatile_contig1.406.1|Name=mRNA_P-fluviatile_contig1.406.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5786bp|location=Sequence derived from alignment at P-fluviatile_contig1:4637091..4642876+ (Porterinema fluviatile SAG_2381)
ATGGGCAATGCTTCGAGCAAGGGTGGGGCGGCCTTGCGGCGAGCTGCGAA
ACCGGCCACCAGGTCCCGGGCTCCTTCGAAGACTGATCCCCCCATTGGCT
CTCAGTTTCCTGTAGAAGATGACCTTCTCGCGAAGTTCCAGCCCAAGAAA
GGCGAGAGATGTGCTGGGTGTGTTGCCATTTGGTGTGCTCGCGCACCCGT
CTCTGTGTCCCACACACTTCTTGCTCAGGCTGCAGGCGAGAATGAACCAC
GCAGCAGTGCCACAGAATGAACGACACAGCAGTACTGTACCTGGTTCTCT
CCACACGAAGTCGATGGTTATTTATGATCTTGTCTCTGAACCAGCATCTC
GAGCGCAGTTGTGTTTGGTGTGCTGGTGTTTTCTTCTCCCTTTTCCTGCT
GGATACACGTCACGGCGGAGTGTTGCCAGATCTTCGCGCAGACCTCTCGA
CACATCGCACTGCTGTCAAGCAGGGTTGTCATACGCACATGACTCACCCT
ACACTCTTACAGACGAGAGCGCTGTATCCCGAATAGAAAGTGCAATAGCA
GTCGTTGCCATGCGGGGCCGGTTGGTGCGCTGGAGTGTTCAAACCAGCTG
CCACCTAAGCATGCATTTCAATACACATGTGAAAATCTGAACAACTTCTC
CAAGTGCCTGCCGTCGCCCTGCTGTAGGAGCGGCCATCAAGGCGAATCCA
CTTTGCGCTGGTAACGTATCGGGCATCTGTTTGCCTCATTGCTGGAAAGC
AAGGGTTTATACATCGTTACTCGCCCTTTTTGCCTCCCCCCCCCCCATAC
GTCCTCCCGCTGCTCTCACCTCGGTGTTTGCCATCGGGATTGGGTTTTCG
TCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTTCGTGAACTCGG
CAACCAGGTTACCGTCTTTTTTGTTCCTCTGTTTTTTTTTGCGGTAACCA
TAATGGTGGTCGAGAAGATCATGTTGTGCGGGGTGGAGAACCCTCACTCC
GCGCAAgGGGGATGATCGCACCACGTTGTGTTAAAATGGTCAAGCACTCT
CGAGGCAGTTACACAGTGCTTTCAACTGTCTGTGGAAGTGAAAGCACCAG
GAAATAAATTAAGCCATACGCAGCTGTCATCCGTATGCAAGGAAGTAAGC
ACAAGATGCCGAAAACCCTAAGCAGGATGCAGCGCTTCCTTCATGCGACT
CGCCGAATACCTCACGGCGCTTCGCGCTTGGTGGTGTGAGAGCCTGGTCC
GGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAA
TGGTCTAACGACTACGGCATGCACGACTATGAGTACACCCCTCCCCCCAT
ACGTCCCATCGCGTTCTTTCTTCGGGAGCAGTCGTCGAAATGTCGAGACA
AGAAGCCCAGGCAGCCGCGAAGAAGATGCACGACCAGCAGGTGTGTGTGG
CAAGGAGGATGTGTTATTGTTGGATTGCGTACGACGCCTCAGATGCCAAA
TTATTGTTACCAGCGAGGAAGACACGCAACACAGGGAGACTTGTGGGAGG
GTTTTTTCGCGCACGTCTCCGAAGCGTGATAAATTTTCACATCTTTTCCT
GGGTCAAACGGTGCAAGAATGTCGAGGATCGATTCCTGGGATGCAAGCAA
CATGAAACCTGGCTTGGGCCAGAGAGGGCAACTGGTAGATATTGAAGCAA
CTGCACTGTCACTGCAGTCGATGACAGCTATTCCTTTAGCTGTAGCTACG
TAGTAGCTGGCGTGTGATGCAAGGCATAAAGTTGAACACACAGAGTGATC
ATTTTACCACACACGCCCAAGCTGCCCAGTGACGGTTACAGACTCGGAGA
AACGCCTCACAACACCGTGTATAGAACCCACACAGTAGTGTGGTGCTATC
AGATGAGTGTGCCGATAAGTCACGATGTAGATGATATGTAAGGGTCTGGT
TGCAGTTGGGTGAGATCGCGTTTCAAGATGAGTCGAGGGGACAGATGCCT
TGATTAACAACTGGGATCAGGGTAGCAGACTGAGATGAGTGCGCGAAATG
CAGCGACTCACACCCCTTTCCAGCAGTCAAAGAACCACATCCAATACACC
CTTAAAAATCCCTCGAATCTTTCATTTGCACTCGAATATATAAATCACCG
TCGGAAGTATACGCGCCCAGAAATTTCCAACTTTACTCGATCCTGACTCT
GGTGCAGCCCGAACTGCAAGTCCGTAATCTTAAAGAATCTGACCAAATCA
TAGGTGCCCCTACTGTCCCTTGCCCATACTGAAACTCATGTATTCCTCAA
CTACTTGAATTCAGCGCAGGGGCCCCGATTGCACCACAGTAGTAGAACAG
AGTTGTATCGCATACGTCCAAATATCCCCACATGTCCTCTCAAGAACTAC
GTCGTTCTACAGTCAGTCTCTGTACCTCAGACAAGACGTCATTCTTATGG
AAACCGTGTCCTTTCAAGGTATTAGTGTCCTCTCCACTAATATAATCACC
AGCGAAAATTCTCAGTGGAAGACCATGTATTTATCGTAATATTTTCAAAT
ACTCTGAAATTCGAATCACTCAGTAAGAAATTGCTTCAGCAGCGATCAAA
TAATCCCAGCTCACAGAGATCTTCCGATTTTCCAGCACACTGTTCCAGAG
AAAATGCCTACTCGCCTAGCAGCATGCGACGGGCTCGAATAAAATCCGAC
GGTTTAAGCGCTTTGGTTAGTATGTCTGCCTTCTGGAGCGACGTCGAAAT
GTATTGCACGTCTACGATCCCATCGGCTACAAGGACCTAACGTGGTGTAG
GCGAGTATGCATTTTCTCTGGTCTTTTTTTGTTTTCCCGAGGCTCATAAC
CTATTGAAGCAACTGCACTGTCACTGCAGTCGATGACAGCTACTCTTTTT
GCTGTAGCTACGTAGTAGCTGGCGTGTGATGCAAGGCATAAAGTTAAACA
CACAGAGTGATCATTATACCGCAGACGCCCAAGCTGCCCAGTGACGGTTA
CAGACTTGGAGACACGCCTCACAATACCGTGTATAGAACCCACACAATAG
TAGAACAGAGTTGTGCTAGCATACGTCCAAATGTCCCAACAGTAGAGAGG
CCCGTCAATCGCCTACCGTTGCCACGAACCGCAGTACCATCGCGCTGCAT
GCGGGGCGCGCTAGCTTGAGAGGCTAGCGGGGCTGGCGGTCGAACTCTTT
CCAATCCCCCGAGTGAATCGCAGCCAGCAACACCCGCCTGGTGCTCTCCA
GCACAAGCGCTACAGTGAAAAGTATCGGCAGTCGCTTATTCTGGCTCGGG
TTCGAGGAGGGCAGGTGTTCGTTCCGCCGAATAATGGTCGATAAATTAAA
CTGCCTGCATGTGCACAGGGCCGGTTTGCGCCAGAATTTCACTAGACTAT
AGCAGATATAAACATTACTCAAATATTACATATATCCCACCCTGCATGCT
TCACGCGCCGTGTCGATTTTCCTGACGATCCCCCCTTCCGCACGAAATAC
AATCAGCAGTAGAGCCTCAATTTACATCGAACGAACTCGACGTGTTCAGC
ACGAAAACATCCAGCAGCCCTGTTACATTCTGTCGGCACACCCACGGACT
CTGCCTTGTCCCATGCGCTCTCCACAACACCATGTCTCGCCGCCGTTCCC
TCTCCTCACCTCCCCTCCCCTCTCCTCTCCTGTCCTCTACTCTCTTCTCC
TGGTACTTTTTCCCATCGCCTGTCCCCCTTCCTTGCCAACAATTCGTCGT
CGTCGTTGTCGTTGTCGCCGGGTTCGAAGGTGCCGGACATGGATCCGGAC
ATCTTGCGGCAGTTTAAGGCGCTCGGGCCCGTCGGCAAGGCGGAGCTCAA
GCACCAGGCAAGAAGCGTCGTTTCTTTGCTTGCGATGAGGGGCCGGATAG
AGCTCAGGATGCACCGAGGCGCCGCCGTTCTACTTGCGGAATCTTTGTCC
CGCGTTCAAGGTGTTTGTTTATCGGCATGTCTGTCTGCCTGTCGGTCTGT
CTGTCTGCCTGCCTGTCTTCCTGCTGGCTGGCTGTACAGCTTGCGCGGCT
CCATGGTTTTCATTTCTCTCTTCTCTTCGTGAGCGCAGATTTGAACAGAG
GAGTCGCTTACCCTCGTCTGCCCTTGCTTCTTTTCTCTCTCTCGCCCCAT
CAGTATCTCCACGTCTACCACTTCAATCATTTCTATTTCTTCTCTTTCCC
TCCCATGTCGCTATACTTCACCACCCTTCGTTCGGGCTTTGTTGGTCTCC
TCAAGTCGTTGCTTGCGTGCCTCCCCGCCCTATCGCGTCCCGTCTCTACT
TTGCTTGCCACGTCCTTCAGAAAATTGTGCCGGATGCCTCTGAGTTAGGG
GAGCCCAACAAAACCCCGCGGCCGTTGCCGAAGAACAGGACAAGGGAGGT
CGCGAGGGCCGGCGAGGTGGACGCGCAGAAGGGGTTTTTGACGCAGACTC
AACTGGCGGCGTTCTTGGAGAGGTGACGCTGCTGTCGTTGCCCTTACATT
CGTGTTCCCAAAAAATACTGACTGTTGTGTGTGTGCATGCGTGCGTGGTT
CGGCGGTGGTTATCGCCGCGTTACACCCCCAAGTCTCCACGATTAGCGCC
CAGAACCCGCCCCTCTAGCCGTTCATGGGCAGTCTCCGTATCGTTACACA
TGGTGCAAGGATATTTTCTGGTGCCCCACCTTACGTCGATACATGGTCAA
CGGAACAGCGACCCCCCTGCCGGCAAACGCGGAAATATTTTGCGCGCGTT
TCGCCTCCGCCAGTATCCTCCGCGACATAACAACGCCGCTTGCGACCCCC
CCACCGCTTTTAAAGTGACGAAGCAAGCAATCGAAGAAGATGAACGGGCT
GAAGTACATCTTTGGCCCGGCCTGCAATACTCGAGCGCACCGCCATACTC
TTTGGCCCTCAGTTCACGGCGGGTGGCAGCTTTTTCACGGGGATATCGTC
ATGGTGAAAAAGACGGCCTGTTGCACTCGCGCGCGAGGCGGAGACTCGTC
CAACGCCGCTTGACCGATTAGTCCCCAGTCCCGGGCCCGAACCGCGGTCT
CTTGAAACCCATTCTCCTTGGTGTACTCCCTTCCTCGTGCACCCTTGATT
TTGCATGCGCTCACACATCCACCACCGCATCGCCCATGTTCCTCCACCTC
TTCTGCGTGGCGACGCTGGGCCGAACGTGCAACAACCGACGGCGTGGACC
TCGACCCTCGACCCTCGAAACGGATGAACGACAACGACACAACCGCGGCA
CGGCGCACAGGCGGGTCGCGGCAGGGGCCGACGCCCCTCCACCTGCAGGG
CTTCTGGAGGATTTCCATATTTCGGAAGAGGATGCCGCGGTGCTGGCGCG
GTACTACAGAGCACCGGATATTCGGAAGCACAACGACGTCATGACCGCAC
GGTGGCGCTAGCCTACCAGACGGAGTGGGCCAAAGTTTCTGTCGCCTTGA
GACTGCATCGTTCGTTTCCCACAGCGTGTGTGGGTGGTTTTGCCCCAAAG
ATGTAGACCCCCCCCCCCTGTCCGAGATTTAACGCCTCTTACAAGGCGTC
GTGAAAGGGCGGCAGGCTGTGTCTGCTTGACCAGGTGGCGTTGCAGCTTG
GTCCTCAATTTCCCTTCAGATAGAGAAGCAGTTCGAGGTGTACGTCGGGA
TGTTGCATCATGAGACGATACTTGCATATACAGGTGAAGGCGCTGCGGCG
CGAAGCTGAAGACTACGAGCCATATTTGGTCCAAGACGACAACACTTCGC
GCTCCTTTGGCGTCCACGGCTGCCCGCCTCAACACA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4637091..4642876+

>mRNA_P-fluviatile_contig1.406.1 ID=mRNA_P-fluviatile_contig1.406.1|Name=mRNA_P-fluviatile_contig1.406.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1224bp|location=Sequence derived from alignment at P-fluviatile_contig1:4637091..4642876+ (Porterinema fluviatile SAG_2381)
ATGGGCAATGCTTCGAGCAAGGGTGGGGCGGCCTTGCGGCGAGCTGCGAA
ACCGGCCACCAGGTCCCGGGCTCCTTCGAAGACTGATCCCCCCATTGGCT
CTCAGTTTCCTGTAGAAGATGACCTTCTCGCGAAGTTCCAGCCCAAGAAA
GGCGAGAGATATGGGCAATGCTTCGAGCAAGGGTGGGGCGGCCTTGCGGC
GAGCTGCGAAACCGGCCACCAGGTCCCGGGCTCCTTCGAAGACTGATCCC
CCCATTGGCTCTCAGTTTCCTGTAGAAGATGACCTTCTCGCGAAGTTCCA
GCCCAAGAAAGGCGAGAGATCAGTCGTCGAAATGTCGAGACAAGAAGCCC
AGGCAGCCGCGAAGAAGATGCACGACCAGCAGCAGTCGTCGAAATGTCGA
GACAAGAAGCCCAGGCAGCCGCGAAGAAGATGCACGACCAGCAGGTGCCG
GACATGGATCCGGACATCTTGCGGCAGTTTAAGGCGCTCGGGCCCGTCGG
CAAGGCGGAGCTCAAGCACCAGGCAAGAAGCGTGCCGGACATGGATCCGG
ACATCTTGCGGCAGTTTAAGGCGCTCGGGCCCGTCGGCAAGGCGGAGCTC
AAGCACCAGGCAAGAAGCAAAATTGTGCCGGATGCCTCTGAGTTAGGGGA
GCCCAACAAAACCCCGCGGCCGTTGCCGAAGAACAGGACAAGGGAGGTCG
CGAGGGCCGGCGAGGTGGACGCGCAGAAGGGGTTTTTGACGCAGACTCAA
CTGGCGGCGTTCTTGGAGAGAAAATTGTGCCGGATGCCTCTGAGTTAGGG
GAGCCCAACAAAACCCCGCGGCCGTTGCCGAAGAACAGGACAAGGGAGGT
CGCGAGGGCCGGCGAGGTGGACGCGCAGAAGGGGTTTTTGACGCAGACTC
AACTGGCGGCGTTCTTGGAGAGGCGGGTCGCGGCAGGGGCCGACGCCCCT
CCACCTGCAGGGCTTCTGGAGGATTTCCATATTTCGGAAGAGGATGCCGC
GGTGCTGGCGCGGTACTACAGAGCACCGGATATTCGGAAGCACAACGACG
TCATGACCGCACGGTGGCGCTAGGCGGGTCGCGGCAGGGGCCGACGCCCC
TCCACCTGCAGGGCTTCTGGAGGATTTCCATATTTCGGAAGAGGATGCCG
CGGTGCTGGCGCGGTACTACAGAGCACCGGATATTCGGAAGCACAACGAC
GTCATGACCGCACGGTGGCGCTAG
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