mRNA_P-fluviatile_contig1.38.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.38.1
Unique NamemRNA_P-fluviatile_contig1.38.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.38.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.390e-30
Identity = 132/217 (60.83%), Postives = 140/217 (64.52%), Query Frame = 2 
Query:  155 AAKAMFWASSPKDSSAGKSSR-VNKSGIXXXXXXXXXXXXXXXXXRRRQLEPEPYSLGHLRVLFQRLIDAQEGKVEGETTVVETLRAISEVVVYGENQDAKLAARAAAKAEXXXXXXXXXXXXXXXXXADLHSGGDG----------------ESVASGKRNDSSSNGDGVGGTRPPAKGPEIEMGGNGDAMEPVVATVMKGLAADVRREDAFFELF 754
            A +AMFW S P    AG S R  N    XXXXXXXXXXXXXXXXX R+Q  PEPYSLGHLRVLFQRLIDAQEGKVEGETTVVETLRAISEVVVYGENQDAKL+ARAAAKA+XXXXXXXXXXXXXXXXX                         ++   G             GTRPP KG E   G       P    V++GL  DVRREDAFFELF
Sbjct:   48 AVEAMFWRSVPSVPWAGPSPRGSNXXXXXXXXXXXXXXXXXXXXXXRKQQAPEPYSLGHLRVLFQRLIDAQEGKVEGETTVVETLRAISEVVVYGENQDAKLSARAAAKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAVEGS------------GTRPPPKGAEGSPGEFTPGNSP--PPVLEGLTTDVRREDAFFELF 250
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BLAST of mRNA_P-fluviatile_contig1.38.1 vs. uniprot
Match: D7FXA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 8.080e-18
Identity = 48/84 (57.14%), Postives = 53/84 (63.10%), Query Frame = 2 
Query:  167 MFWASSPKDSSAGKSSRVNKSGIXXXXXXXXXXXXXXXXXRRRQLEPEPYSLGHLRVLFQRLIDAQEGKVEGETTVVETLRAIS 418
            MFW S P    AG S R + +G                  +R+Q  PEPYSLGHLRVLFQRLIDAQEG+VEGETTVVETLRA S
Sbjct:    1 MFWRSVPSVPWAGPSPRGSNNGAGGGAVGAGGRHAKGGNAQRKQQAPEPYSLGHLRVLFQRLIDAQEGRVEGETTVVETLRAAS 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K768_9PHAE3.390e-3060.83FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FXA6_ECTSI8.080e-1857.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:664989..669162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004640.1
Exons4
Model size760
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.38.1prot_P-fluviatile_contig1.38.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 664989..666712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.8670924-CDS-P-fluviatile_contig1:664988..6652071622815277.8670924-CDS-P-fluviatile_contig1:664988..665207Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 664989..665207 -
1693561376.7453282-CDS-P-fluviatile_contig1:664988..6652071693561376.7453282-CDS-P-fluviatile_contig1:664988..665207Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 664989..665207 -
1622815277.8825252-CDS-P-fluviatile_contig1:665896..6660271622815277.8825252-CDS-P-fluviatile_contig1:665896..666027Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 665897..666027 -
1693561376.7528288-CDS-P-fluviatile_contig1:665896..6660271693561376.7528288-CDS-P-fluviatile_contig1:665896..666027Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 665897..666027 -
1622815277.8954113-CDS-P-fluviatile_contig1:666468..6667121622815277.8954113-CDS-P-fluviatile_contig1:666468..666712Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 666469..666712 -
1693561376.7605083-CDS-P-fluviatile_contig1:666468..6667121693561376.7605083-CDS-P-fluviatile_contig1:666468..666712Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 666469..666712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.9129977-UTR-P-fluviatile_contig1:666712..6667141622815277.9129977-UTR-P-fluviatile_contig1:666712..666714Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 666713..666714 -
1693561376.7748063-UTR-P-fluviatile_contig1:666712..6667141693561376.7748063-UTR-P-fluviatile_contig1:666712..666714Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 666713..666714 -
1622815277.9257913-UTR-P-fluviatile_contig1:668998..6691621622815277.9257913-UTR-P-fluviatile_contig1:668998..669162Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 668999..669162 -
1693561376.786074-UTR-P-fluviatile_contig1:668998..6691621693561376.786074-UTR-P-fluviatile_contig1:668998..669162Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 668999..669162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.38.1

>prot_P-fluviatile_contig1.38.1 ID=prot_P-fluviatile_contig1.38.1|Name=mRNA_P-fluviatile_contig1.38.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=198bp
MFWASSPKDSSAGKSSRVNKSGIGGAGALGGGSNARGANARRRQLEPEPY
SLGHLRVLFQRLIDAQEGKVEGETTVVETLRAISEVVVYGENQDAKLAAR
AAAKAEENKHEEQKAAAAAAAASADLHSGGDGESVASGKRNDSSSNGDGV
GGTRPPAKGPEIEMGGNGDAMEPVVATVMKGLAADVRREDAFFELFW*
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mRNA from alignment at P-fluviatile_contig1:664989..669162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.38.1 ID=mRNA_P-fluviatile_contig1.38.1|Name=mRNA_P-fluviatile_contig1.38.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4174bp|location=Sequence derived from alignment at P-fluviatile_contig1:664989..669162- (Porterinema fluviatile SAG_2381)
GTCGCAAGTGCTGAGCCGTGTTGGAACAGCTCTGTGTGTTTGAAGGGGGC
CGCGGATGGGAGCTGAGCGAGAGGCGTGGATAGAAACCAACTACTACGAG
GCACACTCTGGTATTTGCTGAAACAATCAATTGGCTAGCTCCGCCGCCCT
GTGTGCTGCAAAAGGTCAGTCCTGAGTTCGGTCCCTCACCCGCTTCACCT
GCTCTAGATCCATCGCCTCTTGAGCAGGAAGGAAACAGAGAGAAGAGCGC
GGTAGCGCAGCTCTGAGGTTCACTGCTGTTACCCTCTTCGGGCTTATTTT
TTCTGTTCTATGCAATTTTGAAATACGGAGTCCGAACACACAACCCGCTG
CCCGCTGGTTCCCTCAAAGCACTCGCTCCGAAACGCTGCTGTGCCTCGCC
TAATCGTGACACTTTTTTGCCCGCGACCGCGCCGATTGCTGTAGTTCTCG
ACGCGAAAGGAACACCGTTACCCCATTGTTTTCTGTCGTCCTATCCTGGC
TATTATTGCTCACCACGAATTGCAAGTTTGAAGGTGATTTGCGATTTTCC
GTTCAGGGCTTGTAATGTTTTTCCTGTGCTCGCTTCGCAATAAGCGGGAC
TGTCAGTCAGTACGGGATTTGATTTGTTGAAGGAACGCATGGGTTGCGTT
TTTGGAACGCTGACTCCCCCCCTTGTCCTCGGTAGCGGCTTGTACTTCGT
AGGCGATTGGCTGATTTTTGGTGGGGGGAGGATTCATTGTAAGTGTTGCT
TGTATGCCGATGCGTGTTCTCGGTCATTACTCTTGTCCCGGTGCACTTGA
TGTAAAAAATGTTGACTTCGTCTTGTGTGAGCGACCGACCACCCACACCA
GGTAGGGGATCCGTCACTCAGACATCATACCAAAAAGTACACGTCACCCC
GAGGTCTCCGTAGATCAGTTTGTTCTCTGTGCACCCAAAACAAGAGTATC
TAAATCGGAAATCGTTTACGGAGCACAAGTCTACCCTTGTACTGTGTCGT
GGACCACCCGCATTTTGGTACAAGAGTAGAAAGCTGGATGGCATTAATCG
GTATGCTGCGGCGGAGGGTGTACGTGGATGGGAAATCCGTACGGAGTTAT
CGCACCGGACGCGGACATAATCGCTGCAACCGCGGCGGTCTGCGTGCAGC
AGCAAGGACAGATTGCAGATTCGGAAGACTTGTTTCTCTTGTACACGTAG
TTTGGCCACCAAATTCGCTTGTCGCGGGCAAGCTTCCTGCACCCTAGAGA
TTCGGTCAGGCAGCAACAGCAGGTTGCCTTGAGGCCAATGCTTATGTTGT
ATGATATGTTCGTGGTTCGTCCCTCACACTGGTGACCCTGGCCAGCAGAT
TCCGCCGCTTGATTTTCCTAGCCGTGTGCGAAAGAGAAAATAGGAGAAAA
CGAAAAATCAGGTCGAAAAATGTCATCGACGATTTACTCTCCCAGCCCAT
TGATCATTTTCTTTCGACACACACGTCAGTTGGTGCAACAACGCCTAGCG
CCCTCCACGCTCAGAATAAAGAAGCCTCTCATCCCGAAGGTTTGGGCGCG
ATATGCAAGTAGGGAGGCGAAGTACATTGGCAGCGTTGGGTGTGGTGTTT
GTGTTTACTTACACCGATTTGCGATTTTTCTACCGAATGGCGCGCCGAGG
GAGTTCGGCATCGTGCAGGGACGAACGCCGGGAAGCTCATGCGATACGAC
CATGCCTTTTGTCCTGGTTCTTCGACTCATAAGTATTATGGCAAGATGCG
GCAAGCGCTTTGTTGTCTTCCTTTCTTCTCGTCATCACGCAAAACCTTCG
CACATAGGGGGCGCCTCGCCAGCGCTCTAATCCGTGATCACACAGAAGGG
TTCCTCTCCACGAGGCCAGGGGTGCGAGGCCAAAAAAACGTTGACCCACA
CCCTCTTACCAGGCTCACACGCCTGCTAGCACAGCGCAGGCGGCGTCAGA
AGTAACAACAGCAGCAGCAGCATCAGCAGGTCACGTTTCCTGCCGACCAG
ATGAACACAGAAGACGGCCTGACGAAGCTGCAGTCAATTTGAAAAGATAG
TCGTGCCCTTCGCGAAATCGCAAATTATTTAGTCTCCGCCGAGAAATGTC
AAATTTTTCAAAACGTGCCCACAGAAGCAGATCCACACCAGCGCAGGCAG
CACTCGCAGAACCTCGTGTAGAAGCAGCAGACGTACAGCATCACACTCCC
AGCAAAAACGTTATGCACTATCTTACATGCTGTAACAACAGCGTTGGAAT
CTCCACCCCCCAAAACTACAAAGAGCACTCCAATTAATGCGGTGAACGGC
CACCACCTATGCAATGTCGCCTCTTTCGCACGCGCAACCGGTGAGCAACA
TTTGCACACAGCCATGACCAAGCAAGAATTCACCCTTCCCGCCTACCCCA
CCTGCCTGACGCCCCCTATCCTACAAAACAAAAACCACTCCTCTCCAGCC
ATGTTCTGGGCATCCAGCCCTAAGGACTCCTCGGCCGGGAAATCATCGAG
GGTAAACAAGAGCGGGATCGGCGGGGCAGGCGCCTTGGGCGGCGGCAGCA
ATGCGCGAGGCGCCAACGCGAGGCGGCGGCAGCTGGAGCCTGAGCCGTAC
TCCCTTGGGCACCTGAGGGTGCTCTTCCAGCGGCTGATCGACGCGCAGGA
GGGGAAGGTGGAGGGGGAAACAACTGTGGTGGAGACGCTTCGAGGTGGGT
CGGAGGGTAGGGGAGGGAGGGGGGCGCAGCAGCAGCAGCAGGTTAGTTGG
GTGGGTGCTAGGGCAGGTGGGGGGCACAGCAGTAGCTGGAAGTTAGTTGG
GTATGTAGGCGGGTAGGTGGGCAGGCATGCGGGAAGAAGGTTAGGTGGGT
AGATGGATAGTTGTCTTAGGTGGGGGAATGAGTATGAGGGTGAATGGGAT
GGGGGAGGGGGGTGAGCAGCAGGGAGTAACTGAAGCCTTCGCCGCCACCG
CCGCCACTGCCGTTATTGTTGGTTTTCCTGCTGCTGCCATTGCCGCCCGT
GTTGCTGCTGCTGCTATTGTTGCTGTCTTGTATTGTTGCCGACGTGCTGC
TGCTTCTGCTGTCACTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCG
CTGATGTCCTCCACACGTCCCTGCTGCGTTTTCAGCGATCTCGGAGGTGG
TCGTGTACGGAGAGAACCAGGACGCAAAGCTGGCGGCACGGGCAGCCGCC
AAGGCCGAGGAGAATAAGCACGAGGAACAGAAAGCTGCCGCCGCTGCCGC
CGCTGCGTCCGCCGATGTTTGTAACGAGCAGAAGGTGCCCATTTTTTTGC
TGCAGGGAGGATGAGGGTGACTTAAACCGGCCTGTGACGCTCGTCGATAC
GCCGGGCGCCCCAGGCTCGCTGAGTACGCTCGCTCTTTAGGGGGGCGAGG
GCTACCGAAATCGGGGAAGACAGGGCGTGGGACAAAAAGCCCCCCTCCCC
CCCCCTCCAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAA
TGCTCCGTCCTCACGAGAACGCGTGGTCAATGGTCTAATCGTAAGGCATG
CAAAACATCAGAGTACGCCCCCCCCCTCCCGCCCGTCTTTTTGGTTTGCG
AAAAACCGATGAATGGGGGCGGAGGCGAGAGTTGGGGGGGATGTCTCGTC
TCCAACAAAGCCAACATACTCTTATCACCGGTTGTGGCAGATCAAGAGCA
AGAAAAAACGGCCTTCACATTCATCACGACTGAACTCGAGTACGTAGACT
GCTTTCAATTCGCCTGGCCGGTAGTAAAAGTGAGGCTCTTTGGCTTTAGT
GAAGGTTCAAATTTCGCTCCATCAACTGTGACAGTGGTTTGCGCCATTTT
ATGTTGTTCAACTCATTGCATCTCGTCCGTAAGTTGTTGTCCGCTCCTTG
CTTCTTTTGTACTCTATTTTGTGTCTTGCAGGCGAGAAATGGCTCGCCCA
AGAAGCTCCACAGCGGGGGCGACGGAGAGAGCGTCGCCAGCGGAAAGAGG
AATGATAGCAGTAGCAACGGCGATGGCGTCGGTGGCACGAGACCTCCTGC
CAAGGGCCCAGAAATAGAGATGGGCGGAAACGGAGACGCAATGGAGCCCG
TCGTGGCTACGGTAATGAAGGGGTTGGCGGCTGACGTGCGGAGAGAGGAT
GCGTTTTTCGAGCTCTTCTGGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:664989..669162-

>mRNA_P-fluviatile_contig1.38.1 ID=mRNA_P-fluviatile_contig1.38.1|Name=mRNA_P-fluviatile_contig1.38.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1188bp|location=Sequence derived from alignment at P-fluviatile_contig1:664989..669162- (Porterinema fluviatile SAG_2381)
ATGTTCTGGGCATCCAGCCCTAAGGACTCCTCGGCCGGGAAATCATCGAG
GGTAAACAAGAGCGGGATCGGCGGGGCAGGCGCCTTGGGCGGCGGCAGCA
ATGCGCGAGGCGCCAACGCGAGGCGGCGGCAGCTGGAGCCTGAGCCGTAC
TCCCTTGGGCACCTGAGGGTGCTCTTCCAGCGGCTGATCGACGCGCAGGA
GGGGAAGGTGGAGGGGGAAACAACTGTGGTGGAGACGCTTCGAGATGTTC
TGGGCATCCAGCCCTAAGGACTCCTCGGCCGGGAAATCATCGAGGGTAAA
CAAGAGCGGGATCGGCGGGGCAGGCGCCTTGGGCGGCGGCAGCAATGCGC
GAGGCGCCAACGCGAGGCGGCGGCAGCTGGAGCCTGAGCCGTACTCCCTT
GGGCACCTGAGGGTGCTCTTCCAGCGGCTGATCGACGCGCAGGAGGGGAA
GGTGGAGGGGGAAACAACTGTGGTGGAGACGCTTCGAGCGATCTCGGAGG
TGGTCGTGTACGGAGAGAACCAGGACGCAAAGCTGGCGGCACGGGCAGCC
GCCAAGGCCGAGGAGAATAAGCACGAGGAACAGAAAGCTGCCGCCGCTGC
CGCCGCTGCGTCCGCCGATCGATCTCGGAGGTGGTCGTGTACGGAGAGAA
CCAGGACGCAAAGCTGGCGGCACGGGCAGCCGCCAAGGCCGAGGAGAATA
AGCACGAGGAACAGAAAGCTGCCGCCGCTGCCGCCGCTGCGTCCGCCGAT
CTCCACAGCGGGGGCGACGGAGAGAGCGTCGCCAGCGGAAAGAGGAATGA
TAGCAGTAGCAACGGCGATGGCGTCGGTGGCACGAGACCTCCTGCCAAGG
GCCCAGAAATAGAGATGGGCGGAAACGGAGACGCAATGGAGCCCGTCGTG
GCTACGGTAATGAAGGGGTTGGCGGCTGACGTGCGGAGAGAGGATGCGTT
TTTCGAGCTCTTCTGGTGACTCCACAGCGGGGGCGACGGAGAGAGCGTCG
CCAGCGGAAAGAGGAATGATAGCAGTAGCAACGGCGATGGCGTCGGTGGC
ACGAGACCTCCTGCCAAGGGCCCAGAAATAGAGATGGGCGGAAACGGAGA
CGCAATGGAGCCCGTCGTGGCTACGGTAATGAAGGGGTTGGCGGCTGACG
TGCGGAGAGAGGATGCGTTTTTCGAGCTCTTCTGGTGA
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