mRNA_P-fluviatile_contig1.379.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.379.1
Unique NamemRNA_P-fluviatile_contig1.379.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4462451..4462857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.1664455-CDS-P-fluviatile_contig1:4462450..44628551622815270.1664455-CDS-P-fluviatile_contig1:4462450..4462855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4462451..4462855 +
1693561321.9402444-CDS-P-fluviatile_contig1:4462450..44628551693561321.9402444-CDS-P-fluviatile_contig1:4462450..4462855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4462451..4462855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.379.1prot_P-fluviatile_contig1.379.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4462451..4462855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.379.1

>prot_P-fluviatile_contig1.379.1 ID=prot_P-fluviatile_contig1.379.1|Name=mRNA_P-fluviatile_contig1.379.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=135bp
FGLPIHLVASVSAPVRLTAVCRLFERCCWSISFSFFRGLVPPFLYFCARA
SGIIQHSNTPRAESVLRSVLDWARLDPASTRADLSRSGHARVHKYVSFKL
LLSLVIFSASTSPTQFLRLFLPLSLCRVGDLRGMR
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mRNA from alignment at P-fluviatile_contig1:4462451..4462857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.379.1 ID=mRNA_P-fluviatile_contig1.379.1|Name=mRNA_P-fluviatile_contig1.379.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=407bp|location=Sequence derived from alignment at P-fluviatile_contig1:4462451..4462857+ (Porterinema fluviatile SAG_2381)
TTCGGCTTGCCAATTCATCTTGTTGCTTCGGTAAGCGCTCCCGTTCGCTT
GACCGCTGTATGTCGGTTGTTCGAACGCTGTTGTTGGAGTATTTCTTTTT
CATTCTTCCGTGGCCTTGTGCCGCCGTTCCTGTACTTTTGTGCGCGCGCG
TCTGGGATTATTCAGCATTCAAATACGCCACGTGCTGAGTCGGTCTTGCG
AAGTGTGCTGGATTGGGCGAGGCTCGATCCTGCGTCCACCCGCGCTGATT
TGAGTCGCAGCGGTCACGCACGTGTGCACAAATACGTTTCCTTTAAACTG
CTGCTTTCTCTTGTTATTTTTTCCGCTTCCACTTCCCCGACCCAATTCCT
CCGTCTTTTCCTCCCCCTTTCCCTCTGTCGCGTAGGTGACCTTCGTGGGA
TGCGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4462451..4462857+

>mRNA_P-fluviatile_contig1.379.1 ID=mRNA_P-fluviatile_contig1.379.1|Name=mRNA_P-fluviatile_contig1.379.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=810bp|location=Sequence derived from alignment at P-fluviatile_contig1:4462451..4462857+ (Porterinema fluviatile SAG_2381)
TTCGGCTTGCCAATTCATCTTGTTGCTTCGGTAAGCGCTCCCGTTCGCTT
GACCGCTGTATGTCGGTTGTTCGAACGCTGTTGTTGGAGTATTTCTTTTT
CATTCTTCCGTGGCCTTGTGCCGCCGTTCCTGTACTTTTGTGCGCGCGCG
TCTGGGATTATTCAGCATTCAAATACGCCACGTGCTGAGTCGGTCTTGCG
AAGTGTGCTGGATTGGGCGAGGCTCGATCCTGCGTCCACCCGCGCTGATT
TGAGTCGCAGCGGTCACGCACGTGTGCACAAATACGTTTCCTTTAAACTG
CTGCTTTCTCTTGTTATTTTTTCCGCTTCCACTTCCCCGACCCAATTCCT
CCGTCTTTTCCTCCCCCTTTCCCTCTGTCGCGTAGGTGACCTTCGTGGGA
TGCGGTTCGGCTTGCCAATTCATCTTGTTGCTTCGGTAAGCGCTCCCGTT
CGCTTGACCGCTGTATGTCGGTTGTTCGAACGCTGTTGTTGGAGTATTTC
TTTTTCATTCTTCCGTGGCCTTGTGCCGCCGTTCCTGTACTTTTGTGCGC
GCGCGTCTGGGATTATTCAGCATTCAAATACGCCACGTGCTGAGTCGGTC
TTGCGAAGTGTGCTGGATTGGGCGAGGCTCGATCCTGCGTCCACCCGCGC
TGATTTGAGTCGCAGCGGTCACGCACGTGTGCACAAATACGTTTCCTTTA
AACTGCTGCTTTCTCTTGTTATTTTTTCCGCTTCCACTTCCCCGACCCAA
TTCCTCCGTCTTTTCCTCCCCCTTTCCCTCTGTCGCGTAGGTGACCTTCG
TGGGATGCGG
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