mRNA_P-fluviatile_contig1.372.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.372.1
Unique NamemRNA_P-fluviatile_contig1.372.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4396596..4397850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size805
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.372.1prot_P-fluviatile_contig1.372.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4396881..4397834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.8738983-UTR-P-fluviatile_contig1:4396595..43968801622815266.8738983-UTR-P-fluviatile_contig1:4396595..4396880Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4396596..4396880 -
1693561306.801488-UTR-P-fluviatile_contig1:4396595..43968801693561306.801488-UTR-P-fluviatile_contig1:4396595..4396880Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4396596..4396880 -
1622815266.9162538-UTR-P-fluviatile_contig1:4397834..43978501622815266.9162538-UTR-P-fluviatile_contig1:4397834..4397850Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4397835..4397850 -
1693561306.970412-UTR-P-fluviatile_contig1:4397834..43978501693561306.970412-UTR-P-fluviatile_contig1:4397834..4397850Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4397835..4397850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.8876019-CDS-P-fluviatile_contig1:4396880..43971511622815266.8876019-CDS-P-fluviatile_contig1:4396880..4397151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4396881..4397151 -
1693561306.8096387-CDS-P-fluviatile_contig1:4396880..43971511693561306.8096387-CDS-P-fluviatile_contig1:4396880..4397151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4396881..4397151 -
1622815266.898203-CDS-P-fluviatile_contig1:4397601..43978341622815266.898203-CDS-P-fluviatile_contig1:4397601..4397834Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4397602..4397834 -
1693561306.8252702-CDS-P-fluviatile_contig1:4397601..43978341693561306.8252702-CDS-P-fluviatile_contig1:4397601..4397834Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4397602..4397834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.372.1

>prot_P-fluviatile_contig1.372.1 ID=prot_P-fluviatile_contig1.372.1|Name=mRNA_P-fluviatile_contig1.372.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=168bp
MPPESAGWYAHRLLNDVQDATACWYSTPPFQGQRKQLVTVSLSQDWGCGN
ELADPGEGEEGDSREVWGTADGMTPGARCFAQMQGSPAGQSPATSVKTHA
DRTSSIAKSCNSWRNDRDTKVITGPCRPHDFAESRTANITTWGSWNGTCC
RDPKTSGPKMTSSTARA*
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mRNA from alignment at P-fluviatile_contig1:4396596..4397850-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.372.1 ID=mRNA_P-fluviatile_contig1.372.1|Name=mRNA_P-fluviatile_contig1.372.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1255bp|location=Sequence derived from alignment at P-fluviatile_contig1:4396596..4397850- (Porterinema fluviatile SAG_2381)
AGTGAAGCATCGAGGAATGCCCCCCGAGTCCGCGGGATGGTACGCGCATC
GGCTGCTAAATGATGTGCAGGACGCGACAGCCTGTTGGTACTCGACCCCA
CCCTTTCAAGGACAACGCAAGCAGCTAGTGACGGTATCCTTGTCGCAAGA
TTGGGGCTGCGGGAACGAGCTGGCGGATCCGGGAGAGGGCGAGGAGGGCG
ACAGCCGAGAAGTATGGGGGACTGCAGACGGGATGACACCTGGTGCTCGG
TGGGTTCACCTATTGTCGTCGTTGAGTGGGTAGCTGAGCGACGAGTGAGC
TGGCATCAAGGTATTTTTCGTACTCCGTGAAATTCGGGAACAATTTTTTT
CTATCGACGTGAGGTTAGCGGTATGGACGCCACTATTCTTGATCTTGATG
CCTTCCTCTTTCGTTCCAAATATTGCTTCTTTTCAAGTAAGAAACCAGGG
TGCATCCGCGATCAGTTCCAAAATCTGGTGATTTTTTTGCCCGGCCATCA
TTGTCTCCCTTCCACACGTTAAATGCCCACGACGTTTATCAGCGAGGAGC
GATCTTCGTAAGGCTTGCTGCAGACCCCATTCTCTCGATGTTGGAGATCG
CCTCCCGCCTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTCTTTTTTTACGTCGTGGCTTTGTCGTGACTTTTGGTTCAATTGGCAGG
TGCTTTGCCCAGATGCAAGGCAGCCCAGCGGGTCAGAGTCCGGCGACTAG
CGTGAAAACCCACGCGGACAGAACAAGTTCGATCGCGAAGTCCTGCAATT
CTTGGCGCAACGATCGCGACACCAAAGTCATCACCGGCCCGTGCAGGCCA
CATGACTTCGCCGAGTCGCGGACAGCTAACATAACAACGTGGGGAAGCTG
GAACGGAACATGTTGTCGGGACCCCAAGACATCAGGTCCGAAGATGACCT
CATCTACCGCAAGAGCTTAAATCGCCTTCAGCAGTACTGGACTGAGTCGC
GGAAAGACGTGAACGTCAAGCGCACAATGGAGCCACACAACGCCTGAATT
AACGCTTTGCGGCAAAAACTTGTGGTTGAAGCGAGCCGACGTGCAGGAAA
GTAAGGCCGAGAGATCGACCAGCTTCGTTGACCATAGGTGGCCATAAGAT
TATCTTTCCCGTAGTAGTCCCGGTGCAGGCAGCCCGGGTTGGACAGGCGC
CTCGCCCTTTCGCCCGTGGCGCAGGAGTAAGGGGGGCGGAGGAGGGTAGC
CAACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4396596..4397850-

>mRNA_P-fluviatile_contig1.372.1 ID=mRNA_P-fluviatile_contig1.372.1|Name=mRNA_P-fluviatile_contig1.372.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1008bp|location=Sequence derived from alignment at P-fluviatile_contig1:4396596..4397850- (Porterinema fluviatile SAG_2381)
ATGCCCCCCGAGTCCGCGGGATGGTACGCGCATCGGCTGCTAAATGATGT
GCAGGACGCGACAGCCTGTTGGTACTCGACCCCACCCTTTCAAGGACAAC
GCAAGCAGCTAGTGACGGTATCCTTGTCGCAAGATTGGGGCTGCGGGAAC
GAGCTGGCGGATCCGGGAGAGGGCGAGGAGGGCGACAGCCGAGAAGTATG
GGGGACTGCAGACGGGATGACACCTGGTGCTCGATGCCCCCCGAGTCCGC
GGGATGGTACGCGCATCGGCTGCTAAATGATGTGCAGGACGCGACAGCCT
GTTGGTACTCGACCCCACCCTTTCAAGGACAACGCAAGCAGCTAGTGACG
GTATCCTTGTCGCAAGATTGGGGCTGCGGGAACGAGCTGGCGGATCCGGG
AGAGGGCGAGGAGGGCGACAGCCGAGAAGTATGGGGGACTGCAGACGGGA
TGACACCTGGTGCTCGGTGCTTTGCCCAGATGCAAGGCAGCCCAGCGGGT
CAGAGTCCGGCGACTAGCGTGAAAACCCACGCGGACAGAACAAGTTCGAT
CGCGAAGTCCTGCAATTCTTGGCGCAACGATCGCGACACCAAAGTCATCA
CCGGCCCGTGCAGGCCACATGACTTCGCCGAGTCGCGGACAGCTAACATA
ACAACGTGGGGAAGCTGGAACGGAACATGTTGTCGGGACCCCAAGACATC
AGGTCCGAAGATGACCTCATCTACCGCAAGAGCTTAAGTGCTTTGCCCAG
ATGCAAGGCAGCCCAGCGGGTCAGAGTCCGGCGACTAGCGTGAAAACCCA
CGCGGACAGAACAAGTTCGATCGCGAAGTCCTGCAATTCTTGGCGCAACG
ATCGCGACACCAAAGTCATCACCGGCCCGTGCAGGCCACATGACTTCGCC
GAGTCGCGGACAGCTAACATAACAACGTGGGGAAGCTGGAACGGAACATG
TTGTCGGGACCCCAAGACATCAGGTCCGAAGATGACCTCATCTACCGCAA
GAGCTTAA
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