mRNA_P-fluviatile_contig1.364.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.364.1
Unique NamemRNA_P-fluviatile_contig1.364.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.364.1 vs. uniprot
Match: D8LCY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY9_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.580e-22
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 1 
Query:    1 YPYCRGGYDCFTDTQVRWALSIIAEIGGMIGAPTKTVTLAAMTLGSVAGVEGLVEAMSDDELLLLPATCLLHVLHR-------DPDAFDFT-----LTAVIDTTLSFMTGAPEDSWLEDHRATADGMFVCLTELQRDIEDDLPQALYWAGPVEFMEMFLHQSGICDTRSEEELRDIVDRTSR 510
            YP CR GY+   + Q +WALS+I +I   I APT TVTLAAMTLG   GV G ++ ++++++ LLPA C+   + R       +  A+DF      + A+  T+         D + E     A    + L  L   + + LP+ L   G + F+ +   QSG+ DTR+++EL +  D+T +
Sbjct:  819 YPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFNTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVL---LNEALPEGLSCPGSLHFIRILADQSGLSDTRTDQELENFFDQTDK 997
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BLAST of mRNA_P-fluviatile_contig1.364.1 vs. uniprot
Match: D8LFU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFU0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.400e-21
Identity = 61/183 (33.33%), Postives = 91/183 (49.73%), Query Frame = 1 
Query:    1 YPYCRGGYDCFTDTQVRWALSIIAEIGGMIGAPTKTVTLAAMTLGSVAGVEGLVEAMSDDELLLLPATC-------LLHVLHRDPDAFDFT-----LTAVIDTTLSFMTGAPEDSWLEDHRATADGMFVCLTELQRDIEDDLPQALYWAGPVEFMEMFLHQSGICDTRSEEELRDIVDRTSRA 513
            YP  R GY+   + Q +WALS+I +I   I APT TVTLAAMTLG   GV G ++ ++++++ LLPA C       LL     +  A DF      + A+  T+         D + E     A      L  L   + + LP+ L     + F+ +   QSG+C TR+++EL D  D+  +A
Sbjct:    3 YPRYRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLLESGTEESPACDFNTVTDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLFALVVL---LNNALPEGLSCPESLHFIRILADQSGLCGTRTDQELEDFFDQNRQA 182
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BLAST of mRNA_P-fluviatile_contig1.364.1 vs. uniprot
Match: A0A6H5JXL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.880e-15
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 YPYCRGGYDCFTDTQVRWALSIIAEIGGMIGAPTKTVTLAAMTLGSVAGVEGLVEAMSDDELLLLPATCLLHVLHR 228
            YP CR GY+   + Q +WALS+I +I   I APT TVTLAA+TLG   GV GL++A+S++++ LLPA C+   + R
Sbjct:  700 YPRCRAGYENLEEGQAKWALSVIGKIADAIDAPTHTVTLAAITLGVAGGVPGLMDALSNEQIYLLPAACVADSICR 775
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCY9_ECTSI7.580e-2233.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFU0_ECTSI9.400e-2133.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXL9_9PHAE6.880e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4302145..4302657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815327.0719352-CDS-P-fluviatile_contig1:4302144..43026571622815327.0719352-CDS-P-fluviatile_contig1:4302144..4302657Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4302145..4302657 +
1693561503.5663981-CDS-P-fluviatile_contig1:4302144..43026571693561503.5663981-CDS-P-fluviatile_contig1:4302144..4302657Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4302145..4302657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.364.1prot_P-fluviatile_contig1.364.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4302145..4302657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.364.1

>prot_P-fluviatile_contig1.364.1 ID=prot_P-fluviatile_contig1.364.1|Name=mRNA_P-fluviatile_contig1.364.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=171bp
YPYCRGGYDCFTDTQVRWALSIIAEIGGMIGAPTKTVTLAAMTLGSVAGV
EGLVEAMSDDELLLLPATCLLHVLHRDPDAFDFTLTAVIDTTLSFMTGAP
EDSWLEDHRATADGMFVCLTELQRDIEDDLPQALYWAGPVEFMEMFLHQS
GICDTRSEEELRDIVDRTSRA
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mRNA from alignment at P-fluviatile_contig1:4302145..4302657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.364.1 ID=mRNA_P-fluviatile_contig1.364.1|Name=mRNA_P-fluviatile_contig1.364.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=513bp|location=Sequence derived from alignment at P-fluviatile_contig1:4302145..4302657+ (Porterinema fluviatile SAG_2381)
TATCCCTACTGCCGAGGGGGGTACGACTGCTTCACTGACACCCAAGTGAG
GTGGGCCCTGTCCATCATCGCCGAGATCGGAGGTATGATTGGCGCGCCGA
CGAAGACGGTCACGCTTGCGGCCATGACCCTCGGCTCGGTGGCCGGTGTA
GAGGGTCTGGTCGAAGCGATGAGCGACGACGAGCTCTTGCTGCTGCCGGC
GACTTGCCTCTTGCACGTGCTGCATCGAGACCCGGACGCGTTTGACTTTA
CGCTAACGGCGGTCATCGACACCACACTGTCTTTTATGACGGGGGCGCCG
GAAGACAGTTGGTTAGAAGACCATCGGGCGACCGCCGACGGGATGTTCGT
TTGCTTGACAGAGCTTCAGCGTGACATTGAGGACGACCTCCCGCAAGCGC
TGTACTGGGCTGGCCCAGTGGAGTTTATGGAGATGTTCTTGCACCAAAGC
GGCATCTGCGACACCCGTTCAGAGGAAGAACTTCGGGACATCGTTGATCG
GACCTCCCGTGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4302145..4302657+

>mRNA_P-fluviatile_contig1.364.1 ID=mRNA_P-fluviatile_contig1.364.1|Name=mRNA_P-fluviatile_contig1.364.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1026bp|location=Sequence derived from alignment at P-fluviatile_contig1:4302145..4302657+ (Porterinema fluviatile SAG_2381)
TATCCCTACTGCCGAGGGGGGTACGACTGCTTCACTGACACCCAAGTGAG
GTGGGCCCTGTCCATCATCGCCGAGATCGGAGGTATGATTGGCGCGCCGA
CGAAGACGGTCACGCTTGCGGCCATGACCCTCGGCTCGGTGGCCGGTGTA
GAGGGTCTGGTCGAAGCGATGAGCGACGACGAGCTCTTGCTGCTGCCGGC
GACTTGCCTCTTGCACGTGCTGCATCGAGACCCGGACGCGTTTGACTTTA
CGCTAACGGCGGTCATCGACACCACACTGTCTTTTATGACGGGGGCGCCG
GAAGACAGTTGGTTAGAAGACCATCGGGCGACCGCCGACGGGATGTTCGT
TTGCTTGACAGAGCTTCAGCGTGACATTGAGGACGACCTCCCGCAAGCGC
TGTACTGGGCTGGCCCAGTGGAGTTTATGGAGATGTTCTTGCACCAAAGC
GGCATCTGCGACACCCGTTCAGAGGAAGAACTTCGGGACATCGTTGATCG
GACCTCCCGTGCCTATCCCTACTGCCGAGGGGGGTACGACTGCTTCACTG
ACACCCAAGTGAGGTGGGCCCTGTCCATCATCGCCGAGATCGGAGGTATG
ATTGGCGCGCCGACGAAGACGGTCACGCTTGCGGCCATGACCCTCGGCTC
GGTGGCCGGTGTAGAGGGTCTGGTCGAAGCGATGAGCGACGACGAGCTCT
TGCTGCTGCCGGCGACTTGCCTCTTGCACGTGCTGCATCGAGACCCGGAC
GCGTTTGACTTTACGCTAACGGCGGTCATCGACACCACACTGTCTTTTAT
GACGGGGGCGCCGGAAGACAGTTGGTTAGAAGACCATCGGGCGACCGCCG
ACGGGATGTTCGTTTGCTTGACAGAGCTTCAGCGTGACATTGAGGACGAC
CTCCCGCAAGCGCTGTACTGGGCTGGCCCAGTGGAGTTTATGGAGATGTT
CTTGCACCAAAGCGGCATCTGCGACACCCGTTCAGAGGAAGAACTTCGGG
ACATCGTTGATCGGACCTCCCGTGCC
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