mRNA_P-fluviatile_contig1.352.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.352.1
Unique NamemRNA_P-fluviatile_contig1.352.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.352.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.010e-13
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -1 
Query:  474 RDGAVKKGAAQRSTREWPVGGHGCYTVVACPGETAVAYVSARCPGPGW 617
            R G    G+ +R  +EWPVGGHG YTVVACPGETAVA+VSA+CPGPGW
Sbjct:  586 RKGRGGGGSEERCAKEWPVGGHGVYTVVACPGETAVAFVSAKCPGPGW 633
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K807_9PHAE2.010e-1370.83Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4203058..4203677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.956671-CDS-P-fluviatile_contig1:4203057..42034411622815269.956671-CDS-P-fluviatile_contig1:4203057..4203441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4203058..4203441 +
1693561321.7627919-CDS-P-fluviatile_contig1:4203057..42034411693561321.7627919-CDS-P-fluviatile_contig1:4203057..4203441Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4203058..4203441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.9713244-UTR-P-fluviatile_contig1:4203441..42036771622815269.9713244-UTR-P-fluviatile_contig1:4203441..4203677Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4203442..4203677 +
1693561321.8186545-UTR-P-fluviatile_contig1:4203441..42036771693561321.8186545-UTR-P-fluviatile_contig1:4203441..4203677Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4203442..4203677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.352.1prot_P-fluviatile_contig1.352.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4203058..4203441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.352.1

>prot_P-fluviatile_contig1.352.1 ID=prot_P-fluviatile_contig1.352.1|Name=mRNA_P-fluviatile_contig1.352.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=128bp
LDFFALFSEQCRSTCVACRAANIHKEITGKHSDSGSIFFPNFRCRTEGNK
QITSAWTTLLNISATRINSRLHQYSYYTSRSAKLTETFKAPNICAHSRST
SVRPFGTTGFYCSLSSPMPSNSRTDLL*
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mRNA from alignment at P-fluviatile_contig1:4203058..4203677+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.352.1 ID=mRNA_P-fluviatile_contig1.352.1|Name=mRNA_P-fluviatile_contig1.352.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=620bp|location=Sequence derived from alignment at P-fluviatile_contig1:4203058..4203677+ (Porterinema fluviatile SAG_2381)
CTGGACTTCTTCGCGCTGTTTTCTGAACAATGTCGAAGTACATGCGTTGC
TTGTCGAGCGGCAAACATTCACAAGGAGATCACAGGAAAGCACAGCGATT
CAGGAAGCATCTTCTTCCCAAATTTCAGGTGTCGAACGGAAGGCAATAAA
CAAATAACCTCCGCCTGGACTACACTACTGAATATATCAGCCACTAGAAT
CAATTCTCGTTTACATCAGTACTCCTATTACACATCTAGAAGCGCAAAGC
TCACCGAAACCTTCAAGGCCCCGAACATTTGCGCTCACTCCCGATCTACT
TCCGTCCGGCCATTCGGCACGACAGGATTCTACTGCAGCCTCTCTTCGCC
CATGCCATCGAACTCCCGGACGGATCTACTCTAACACTAGTCCCTGCTTC
GCAGAGTGACAACAATCCGCTTTTGTCGGTCGCCAACGCCCTTGCCACCA
GACGAGACACTCGGCTTCGGTCACCAACCCGGCCCGGGACACCGCGCCGA
GACGTACGCTACGGCGGTTTCGCCGGGGCACGCCACAACCGTGTAACACC
CGTGGCCCCCGACAGGCCACTCTCTGGTAGACCGCTGAGCAGCTCCTTTT
TTTACAGCCCCATCCCGACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4203058..4203677+

>mRNA_P-fluviatile_contig1.352.1 ID=mRNA_P-fluviatile_contig1.352.1|Name=mRNA_P-fluviatile_contig1.352.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=768bp|location=Sequence derived from alignment at P-fluviatile_contig1:4203058..4203677+ (Porterinema fluviatile SAG_2381)
CTGGACTTCTTCGCGCTGTTTTCTGAACAATGTCGAAGTACATGCGTTGC
TTGTCGAGCGGCAAACATTCACAAGGAGATCACAGGAAAGCACAGCGATT
CAGGAAGCATCTTCTTCCCAAATTTCAGGTGTCGAACGGAAGGCAATAAA
CAAATAACCTCCGCCTGGACTACACTACTGAATATATCAGCCACTAGAAT
CAATTCTCGTTTACATCAGTACTCCTATTACACATCTAGAAGCGCAAAGC
TCACCGAAACCTTCAAGGCCCCGAACATTTGCGCTCACTCCCGATCTACT
TCCGTCCGGCCATTCGGCACGACAGGATTCTACTGCAGCCTCTCTTCGCC
CATGCCATCGAACTCCCGGACGGATCTACTCTAACTGGACTTCTTCGCGC
TGTTTTCTGAACAATGTCGAAGTACATGCGTTGCTTGTCGAGCGGCAAAC
ATTCACAAGGAGATCACAGGAAAGCACAGCGATTCAGGAAGCATCTTCTT
CCCAAATTTCAGGTGTCGAACGGAAGGCAATAAACAAATAACCTCCGCCT
GGACTACACTACTGAATATATCAGCCACTAGAATCAATTCTCGTTTACAT
CAGTACTCCTATTACACATCTAGAAGCGCAAAGCTCACCGAAACCTTCAA
GGCCCCGAACATTTGCGCTCACTCCCGATCTACTTCCGTCCGGCCATTCG
GCACGACAGGATTCTACTGCAGCCTCTCTTCGCCCATGCCATCGAACTCC
CGGACGGATCTACTCTAA
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