mRNA_P-fluviatile_contig1.351.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.351.1
Unique NamemRNA_P-fluviatile_contig1.351.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.351.1 vs. uniprot
Match: D8LNA2_ECTSI (MORN repeat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.590e-12
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:    1 ILARRQVQKDEEKAAKQAADVANGLENERLRKDEIKRLDAEAARTGQEERXXXXXXXXXXXXXKKDLSHSPPRER 225
            ILARRQV++DE+ AA QAA+VA GLE ERLR++E++R+DA+A   G+E               +KDLS SPPR+R
Sbjct:  329 ILARRQVERDEQAAANQAAEVARGLEEERLRQEEVERMDAQAGEKGKEALEAAQEAAAAKKQKQKDLSRSPPRDR 403
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNA2_ECTSI4.590e-1252.00MORN repeat domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4202488..4202715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.4721622-CDS-P-fluviatile_contig1:4202487..42027151622815325.4721622-CDS-P-fluviatile_contig1:4202487..4202715Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4202488..4202715 +
1693561499.7032874-CDS-P-fluviatile_contig1:4202487..42027151693561499.7032874-CDS-P-fluviatile_contig1:4202487..4202715Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4202488..4202715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.351.1prot_P-fluviatile_contig1.351.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4202488..4202715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.351.1

>prot_P-fluviatile_contig1.351.1 ID=prot_P-fluviatile_contig1.351.1|Name=mRNA_P-fluviatile_contig1.351.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
ILARRQVQKDEEKAAKQAADVANGLENERLRKDEIKRLDAEAARTGQEER
KAAEAAAAAEKQKKKDLSHSPPRER*
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mRNA from alignment at P-fluviatile_contig1:4202488..4202715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.351.1 ID=mRNA_P-fluviatile_contig1.351.1|Name=mRNA_P-fluviatile_contig1.351.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=228bp|location=Sequence derived from alignment at P-fluviatile_contig1:4202488..4202715+ (Porterinema fluviatile SAG_2381)
ATCCTCGCGAGAAGGCAGGTGCAAAAAGACGAAGAGAAGGCCGCAAAACA
GGCGGCCGACGTCGCCAACGGCCTGGAGAACGAGCGGCTTCGAAAGGACG
AGATCAAGAGGCTGGACGCCGAAGCCGCGAGAACGGGCCAGGAGGAGCGT
AAGGCAGCGGAAGCGGCGGCCGCGGCGGAGAAGCAGAAAAAAAAGGATCT
GAGTCATTCTCCTCCTCGTGAGCGGTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4202488..4202715+

>mRNA_P-fluviatile_contig1.351.1 ID=mRNA_P-fluviatile_contig1.351.1|Name=mRNA_P-fluviatile_contig1.351.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=456bp|location=Sequence derived from alignment at P-fluviatile_contig1:4202488..4202715+ (Porterinema fluviatile SAG_2381)
ATCCTCGCGAGAAGGCAGGTGCAAAAAGACGAAGAGAAGGCCGCAAAACA
GGCGGCCGACGTCGCCAACGGCCTGGAGAACGAGCGGCTTCGAAAGGACG
AGATCAAGAGGCTGGACGCCGAAGCCGCGAGAACGGGCCAGGAGGAGCGT
AAGGCAGCGGAAGCGGCGGCCGCGGCGGAGAAGCAGAAAAAAAAGGATCT
GAGTCATTCTCCTCCTCGTGAGCGGTAAATCCTCGCGAGAAGGCAGGTGC
AAAAAGACGAAGAGAAGGCCGCAAAACAGGCGGCCGACGTCGCCAACGGC
CTGGAGAACGAGCGGCTTCGAAAGGACGAGATCAAGAGGCTGGACGCCGA
AGCCGCGAGAACGGGCCAGGAGGAGCGTAAGGCAGCGGAAGCGGCGGCCG
CGGCGGAGAAGCAGAAAAAAAAGGATCTGAGTCATTCTCCTCCTCGTGAG
CGGTAA
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