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Homology
BLAST of mRNA_P-fluviatile_contig1.349.1 vs. uniprot
Match: A0A6H5K5B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B3_9PHAE) HSP 1 Score: 432 bits (1110), Expect = 1.480e-140 Identity = 289/621 (46.54%), Postives = 374/621 (60.23%), Query Frame = 1
Query: 13 NHESLNVSRGLCDSIKLLAEQRLAYETKLEERART---DSGMSKEGRVTYMKLRGDQLLHMAEMARHDGGVPIADCEGLAAEALEAYLAAQQEVTST-VDSSNATTNGIISSYG-SHHN-----NALMRLHLLQVELALKISSVLFHLLDRPVEAWEVGYPTYLAAAERPVRLGARGLAITQALRDHLACIDIKSVES-YQFEGGNRGMKTDTYGDICSANPRH-QDSGGETARHRPVQGEWGFLRLSAENDKGIGQCAGLGRTASDKLRALAQVKQARARLEAVTATDRVLLGTMGCADIVLSALKKIFSAYTTNHAKPAQTRADGS-----KHLRAQMRKATPQVERRKGSVLSWLGFEALCRDFKIIPTAEAACHTAKIKTTTTVADPASPPRLG-------LHSQHKHKSVRGDSPSHQSSPRTPPDWLGSKSSRRQDSPPSVLLSANTSS---GLLSEVEAFIAFVSACTHGSVVASFPD-------------GGSGSGGVVGPNVKRVPNRAFSGMGIADEGEGTSCAEEDAAYWRGMERLVLSEFPTQDASGGAPGLNFRQFVDALARCGLLGFPGKKG---QERLSVAERAQAIFTEQMKILDGQHVDARLRQ 1746
+HE N+SR LCD I L +RLA++TK+ +R T DS MS EGRVTY+KLRGDQLLH+AE+ARH+G V + +CEGLAAEALEAY+AAQ E +S ++SS+ + + G SHH+ +AL LH L++ELAL+ISSVL HLLDRP+EAW YPTY+AA ERP RLGARGLA+TQ LRDHLACI ++ S YQ EG + + P H QD G A EWGFLR++ D+G G G+G TAS KLRALAQ+KQAR+ L+ +TA RVLLGTM A+ V SALK+IF Y +A+PA+ +D KH+ Q RKATP+ R+G LSW GFE++C DF I A T + AD + PP + +S D+ H+S P+T + R SPP +L +T++ GLLS ++A IAFVSACTHGSVVASFPD GG G GG + A + G +EG+G + D AYWR +ER++LS D APGLNFRQFVD LARCGL+G+ K G ++ +S AER Q +F +M++LD +HV+ L+Q
Sbjct: 6 HHEGRNISRDLCDGIARLTAKRLAFDTKMRQRGLTYSADSCMSVEGRVTYLKLRGDQLLHLAEIARHNGEVSMPECEGLAAEALEAYVAAQDEASSNAIESSDVVNSRTNTDNGRSHHSXXXXXSALPELHPLRIELALRISSVLLHLLDRPIEAWGAAYPTYVAATERPTRLGARGLAVTQVLRDHLACIGVRGGGSGYQQEGSSACKNS------VGEEPTHVQDPTGGFAGGD----EWGFLRMAPGFDEGSGAVVGIGSTASGKLRALAQLKQARSCLDGMTAATRVLLGTMEHANAVRSALKEIFDVYCRKNAQPAKKCSDDGHGTTGKHVWLQGRKATPRAFNRQGPFLSWPGFESVCHDFNITTAA----------TVSPAADLSHPPAQNNXXXXXXXXXXXQFRSTSPDNHRHRS-PKTNAAAPAATVVPRTSSPPPRMLLGDTATAVGGLLSRLQARIAFVSACTHGSVVASFPDPDGTSVGNNVVVSGGRGGGGE--RECRTDAGIAGTEPGRVEEGDGIPSTDGDTAYWRAVERVILSGAAPDDKDA-APGLNFRQFVDGLARCGLIGY-SKNGTGIKQCVSAAERMQDVFIARMRLLDREHVETALQQ 601
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-04_004595.1 |
| Exons | 5 |
| Model size | 1776 |
| Cds size | 1776 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815325.1779766-CDS-P-fluviatile_contig1:4194115..4194248 | 1622815325.1779766-CDS-P-fluviatile_contig1:4194115..4194248 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4194116..4194248 - |
| 1693561499.5437768-CDS-P-fluviatile_contig1:4194115..4194248 | 1693561499.5437768-CDS-P-fluviatile_contig1:4194115..4194248 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4194116..4194248 - |
| 1622815325.2171254-CDS-P-fluviatile_contig1:4194305..4194430 | 1622815325.2171254-CDS-P-fluviatile_contig1:4194305..4194430 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4194306..4194430 - |
| 1693561499.5530112-CDS-P-fluviatile_contig1:4194305..4194430 | 1693561499.5530112-CDS-P-fluviatile_contig1:4194305..4194430 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4194306..4194430 - |
| 1622815325.2288058-CDS-P-fluviatile_contig1:4194781..4195399 | 1622815325.2288058-CDS-P-fluviatile_contig1:4194781..4195399 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4194782..4195399 - |
| 1693561499.5622983-CDS-P-fluviatile_contig1:4194781..4195399 | 1693561499.5622983-CDS-P-fluviatile_contig1:4194781..4195399 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4194782..4195399 - |
| 1622815325.2408369-CDS-P-fluviatile_contig1:4195602..4196387 | 1622815325.2408369-CDS-P-fluviatile_contig1:4195602..4196387 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4195603..4196387 - |
| 1693561499.5711462-CDS-P-fluviatile_contig1:4195602..4196387 | 1693561499.5711462-CDS-P-fluviatile_contig1:4195602..4196387 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4195603..4196387 - |
| 1622815325.2544694-CDS-P-fluviatile_contig1:4196495..4196610 | 1622815325.2544694-CDS-P-fluviatile_contig1:4196495..4196610 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4196496..4196610 - |
| 1693561499.5798151-CDS-P-fluviatile_contig1:4196495..4196610 | 1693561499.5798151-CDS-P-fluviatile_contig1:4196495..4196610 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 4196496..4196610 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.349.1 >prot_P-fluviatile_contig1.349.1 ID=prot_P-fluviatile_contig1.349.1|Name=mRNA_P-fluviatile_contig1.349.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=592bp
MLFANHESLNVSRGLCDSIKLLAEQRLAYETKLEERARTDSGMSKEGRVT YMKLRGDQLLHMAEMARHDGGVPIADCEGLAAEALEAYLAAQQEVTSTVD SSNATTNGIISSYGSHHNNALMRLHLLQVELALKISSVLFHLLDRPVEAW EVGYPTYLAAAERPVRLGARGLAITQALRDHLACIDIKSVESYQFEGGNR GMKTDTYGDICSANPRHQDSGGETARHRPVQGEWGFLRLSAENDKGIGQC AGLGRTASDKLRALAQVKQARARLEAVTATDRVLLGTMGCADIVLSALKK IFSAYTTNHAKPAQTRADGSKHLRAQMRKATPQVERRKGSVLSWLGFEAL CRDFKIIPTAEAACHTAKIKTTTTVADPASPPRLGLHSQHKHKSVRGDSP SHQSSPRTPPDWLGSKSSRRQDSPPSVLLSANTSSGLLSEVEAFIAFVSA CTHGSVVASFPDGGSGSGGVVGPNVKRVPNRAFSGMGIADEGEGTSCAEE DAAYWRGMERLVLSEFPTQDASGGAPGLNFRQFVDALARCGLLGFPGKKG QERLSVAERAQAIFTEQMKILDGQHVDARLRQLVQPPAAVSH back to topmRNA from alignment at P-fluviatile_contig1:4194116..4196610- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig1.349.1 ID=mRNA_P-fluviatile_contig1.349.1|Name=mRNA_P-fluviatile_contig1.349.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2495bp|location=Sequence derived from alignment at P-fluviatile_contig1:4194116..4196610- (Porterinema fluviatile SAG_2381) ATGCTCTTTGCCAACCACGAAAGCTTAAATGTCAGCAGAGGCTTATGCGA
CAGCATCAAGCTCCTTGCCGAGCAGCGCTTGGCGTATGAGACAAAACTCG
AGGAACGAGCTAGAAGTTCCGCCGCCAGACCTTGGTCTCCCAGCGGCAGC
GCCGCCAAACCAGCGGCAGCGACTCAAATGAAGAACGCATCGTCTAGAGG
GCTTTCTGTCGCCCAGCAGGCAGCGGATTCGGGTATGTCGAAAGAAGGAC
GGGTGACGTATATGAAACTCAGAGGCGATCAGCTCCTCCACATGGCCGAA
ATGGCGCGGCACGACGGTGGGGTTCCCATTGCTGACTGCGAAGGTCTTGC
GGCGGAGGCGCTTGAAGCATACCTCGCCGCCCAGCAGGAAGTGACCTCGA
CAGTGGACAGCTCCAACGCAACAACCAACGGCATCATCAGCAGTTACGGA
AGTCACCACAATAATGCACTCATGCGGCTCCACCTTTTGCAGGTGGAGCT
GGCGCTGAAGATATCTTCCGTTCTCTTTCACCTACTGGATCGGCCTGTCG
AAGCATGGGAGGTCGGTTACCCGACTTACCTCGCGGCCGCGGAACGGCCG
GTTCGTCTCGGTGCTAGAGGCTTGGCCATCACCCAGGCCCTGAGAGATCA
CCTGGCGTGCATTGATATCAAGAGCGTAGAGTCGTACCAATTCGAAGGCG
GCAACAGAGGTATGAAGACGGACACCTACGGCGACATCTGCAGCGCCAAT
CCCCGTCACCAGGATTCGGGCGGCGAAACGGCCAGACACCGGCCAGTCCA
AGGCGAGTGGGGTTTCCTCCGATTGTCGGCCGAGAATGATAAAGGCATCG
GGCAGTGCGCCGGCCTAGGGAGGACGGCGAGCGATAAGTTGCGGGCCCTT
GCGCAGGTGAAGCAAGCTCGGGCGCGCTTGGAGGCTGTGACCGCGACGGA
CAGGGTGCTCCTCGGAACCATGGGGTGTGCGGATATTGTGCTGTCAGCGT
TGAAGAAGGTAATATCAAAGAACGATCACTACCAGGAGACATTCCGCGCT
CGGTGTTTGATAGCAGGCAGTGATGTCGATCTCGGATATCGTTCAAAGGG
GAATGTGCAGCTGAATATGAAGTTATGTTGCGTTACACGCGTGCCCTGCA
CTCTACTTGCTTTTCGTCTGTCCCATGCACCGCCTGAACCTTTCCTTGTG
TTATCACGCAGATATTTTCTGCGTACACAACGAACCACGCCAAGCCAGCC
CAAACCCGCGCGGACGGAAGCAAGCATTTGAGGGCACAGATGAGGAAAGC
GACGCCGCAAGTAGAACGTCGGAAAGGCTCGGTCCTCTCCTGGCTCGGCT
TCGAGGCCTTGTGTAGAGATTTCAAAATCATTCCCACCGCAGAAGCCGCC
TGTCATACAGCGAAGATAAAAACGACCACGACGGTTGCTGATCCCGCTTC
ACCTCCCCGCCTCGGACTTCACAGCCAACACAAGCACAAGTCAGTCCGAG
GTGACTCGCCCAGTCATCAGTCATCACCAAGAACGCCTCCCGACTGGTTG
GGGTCCAAGAGTTCTCGGCGACAAGACTCTCCGCCGAGTGTGCTGTTGTC
GGCGAATACTAGCAGTGGTCTGCTGAGCGAGGTGGAAGCGTTCATCGCCT
TCGTGAGCGCTTGCACGCACGGGTCGGTGGTAGCCTCATTCCCCGACGGC
GGCAGTGGCAGCGGCGGGGTCGTCGGGCCCAACGTTAAGAGGGTGCCAAA
CAGGGCGTTTTCCGGCATGGGCATAGCGGATGAGGGCGAAGGGACGAGCT
GCGCGGAAGAAGATGCAGCTTACTGGCGCGTGAGTTCTTTGCTTCAGTGT
TCACGCAACAATGGAGAGCGCCTCGAGAACCGGCAAGGGGTAATGGGTCA
TTTTTGTTGAAAGCACTTCCTTGTGGAGCGGGGGGCTGCCAGAGTTTTGG
AATGCTGCCAGAGTGTAATGGGTATAATCTAAACTCCAAGGGCTGACCAG
CCCGTGGTTGTTTGGCGTACACATGGCACCCACTTCACTAAACAACGAGC
ACCTTCTAATTTGTGCGATCTTCAAGTGAAGCGCGTTCATCCCGTGGCAT
GACCCAACAACAACCAACGCGATGACGAACACATCCGTGCTCGTTTCACC
GTTCCCGTAATTTGCTGACCGTTCCCTCAGGGCATGGAGCGGCTGGTCTT
GTCAGAATTTCCTACGCAAGATGCGAGCGGCGGCGCGCCGGGGCTAAACT
TTCGGCAGTTCGTAGATGCGCTCGCTCGTTGTGGCCTCCTCGGGTTTCCA
GGCAAGTGCGTTGACGCCATGGAGACGCTGGACGGACGAGGGTCGTCCAC
GGGCGGCGCAAGAAAAGGCCAAGAGCGCCTGTCCGTAGCCGAGCGCGCGC
AAGCAATATTCACCGAGCAGATGAAGATCCTCGACGGCCAACACGTTGAC
GCGAGGCTGCGGCAACTGGTGCAACCGCCAGCTGCTGTCAGCCAC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig1:4194116..4196610- >mRNA_P-fluviatile_contig1.349.1 ID=mRNA_P-fluviatile_contig1.349.1|Name=mRNA_P-fluviatile_contig1.349.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3552bp|location=Sequence derived from alignment at P-fluviatile_contig1:4194116..4196610- (Porterinema fluviatile SAG_2381) ATGCTCTTTGCCAACCACGAAAGCTTAAATGTCAGCAGAGGCTTATGCGA CAGCATCAAGCTCCTTGCCGAGCAGCGCTTGGCGTATGAGACAAAACTCG AGGAACGAGCTAGAAATGCTCTTTGCCAACCACGAAAGCTTAAATGTCAG CAGAGGCTTATGCGACAGCATCAAGCTCCTTGCCGAGCAGCGCTTGGCGT ATGAGACAAAACTCGAGGAACGAGCTAGAACGGATTCGGGTATGTCGAAA GAAGGACGGGTGACGTATATGAAACTCAGAGGCGATCAGCTCCTCCACAT GGCCGAAATGGCGCGGCACGACGGTGGGGTTCCCATTGCTGACTGCGAAG GTCTTGCGGCGGAGGCGCTTGAAGCATACCTCGCCGCCCAGCAGGAAGTG ACCTCGACAGTGGACAGCTCCAACGCAACAACCAACGGCATCATCAGCAG TTACGGAAGTCACCACAATAATGCACTCATGCGGCTCCACCTTTTGCAGG TGGAGCTGGCGCTGAAGATATCTTCCGTTCTCTTTCACCTACTGGATCGG CCTGTCGAAGCATGGGAGGTCGGTTACCCGACTTACCTCGCGGCCGCGGA ACGGCCGGTTCGTCTCGGTGCTAGAGGCTTGGCCATCACCCAGGCCCTGA GAGATCACCTGGCGTGCATTGATATCAAGAGCGTAGAGTCGTACCAATTC GAAGGCGGCAACAGAGGTATGAAGACGGACACCTACGGCGACATCTGCAG CGCCAATCCCCGTCACCAGGATTCGGGCGGCGAAACGGCCAGACACCGGC CAGTCCAAGGCGAGTGGGGTTTCCTCCGATTGTCGGCCGAGAATGATAAA GGCATCGGGCAGTGCGCCGGCCTAGGGAGGACGGCGAGCGATAAGTTGCG GGCCCTTGCGCAGGTGAAGCAAGCTCGGGCGCGCTTGGAGGCTGTGACCG CGACGGACAGGGTGCTCCTCGGAACCATGGGGTGTGCGGATATTGTGCTG TCAGCGTTGAAGAAGCGGATTCGGGTATGTCGAAAGAAGGACGGGTGACG TATATGAAACTCAGAGGCGATCAGCTCCTCCACATGGCCGAAATGGCGCG GCACGACGGTGGGGTTCCCATTGCTGACTGCGAAGGTCTTGCGGCGGAGG CGCTTGAAGCATACCTCGCCGCCCAGCAGGAAGTGACCTCGACAGTGGAC AGCTCCAACGCAACAACCAACGGCATCATCAGCAGTTACGGAAGTCACCA CAATAATGCACTCATGCGGCTCCACCTTTTGCAGGTGGAGCTGGCGCTGA AGATATCTTCCGTTCTCTTTCACCTACTGGATCGGCCTGTCGAAGCATGG GAGGTCGGTTACCCGACTTACCTCGCGGCCGCGGAACGGCCGGTTCGTCT CGGTGCTAGAGGCTTGGCCATCACCCAGGCCCTGAGAGATCACCTGGCGT GCATTGATATCAAGAGCGTAGAGTCGTACCAATTCGAAGGCGGCAACAGA GGTATGAAGACGGACACCTACGGCGACATCTGCAGCGCCAATCCCCGTCA CCAGGATTCGGGCGGCGAAACGGCCAGACACCGGCCAGTCCAAGGCGAGT GGGGTTTCCTCCGATTGTCGGCCGAGAATGATAAAGGCATCGGGCAGTGC GCCGGCCTAGGGAGGACGGCGAGCGATAAGTTGCGGGCCCTTGCGCAGGT GAAGCAAGCTCGGGCGCGCTTGGAGGCTGTGACCGCGACGGACAGGGTGC TCCTCGGAACCATGGGGTGTGCGGATATTGTGCTGTCAGCGTTGAAGAAG ATATTTTCTGCGTACACAACGAACCACGCCAAGCCAGCCCAAACCCGCGC GGACGGAAGCAAGCATTTGAGGGCACAGATGAGGAAAGCGACGCCGCAAG TAGAACGTCGGAAAGGCTCGGTCCTCTCCTGGCTCGGCTTCGAGGCCTTG TGTAGAGATTTCAAAATCATTCCCACCGCAGAAGCCGCCTGTCATACAGC GAAGATAAAAACGACCACGACGGTTGCTGATCCCGCTTCACCTCCCCGCC TCGGACTTCACAGCCAACACAAGCACAAGTCAGTCCGAGGTGACTCGCCC AGTCATCAGTCATCACCAAGAACGCCTCCCGACTGGTTGGGGTCCAAGAG TTCTCGGCGACAAGACTCTCCGCCGAGTGTGCTGTTGTCGGCGAATACTA GCAGTGGTCTGCTGAGCGAGGTGGAAGCGTTCATCGCCTTCGTGAGCGCT TGCACGCACGGGTCGGTGGTAGCCTCATTCCCCGACGGCGGCAGTGGCAG CGGCGGGGTCGTCGGGCCCAACGTTAAGAGGGTGCCAAACAGGGCGTTTT CCGGCATGGGCATAGCGGATGAGGGCGAAGGGACGAGCTGCGCGGAAGAA GATGCAGCTTACTGGCGCATATTTTCTGCGTACACAACGAACCACGCCAA GCCAGCCCAAACCCGCGCGGACGGAAGCAAGCATTTGAGGGCACAGATGA GGAAAGCGACGCCGCAAGTAGAACGTCGGAAAGGCTCGGTCCTCTCCTGG CTCGGCTTCGAGGCCTTGTGTAGAGATTTCAAAATCATTCCCACCGCAGA AGCCGCCTGTCATACAGCGAAGATAAAAACGACCACGACGGTTGCTGATC CCGCTTCACCTCCCCGCCTCGGACTTCACAGCCAACACAAGCACAAGTCA GTCCGAGGTGACTCGCCCAGTCATCAGTCATCACCAAGAACGCCTCCCGA CTGGTTGGGGTCCAAGAGTTCTCGGCGACAAGACTCTCCGCCGAGTGTGC TGTTGTCGGCGAATACTAGCAGTGGTCTGCTGAGCGAGGTGGAAGCGTTC ATCGCCTTCGTGAGCGCTTGCACGCACGGGTCGGTGGTAGCCTCATTCCC CGACGGCGGCAGTGGCAGCGGCGGGGTCGTCGGGCCCAACGTTAAGAGGG TGCCAAACAGGGCGTTTTCCGGCATGGGCATAGCGGATGAGGGCGAAGGG ACGAGCTGCGCGGAAGAAGATGCAGCTTACTGGCGCGGCATGGAGCGGCT GGTCTTGTCAGAATTTCCTACGCAAGATGCGAGCGGCGGCGCGCCGGGGC TAAACTTTCGGCAGTTCGTAGATGCGCTCGCTCGTTGTGGCCTCCTCGGG TTTCCAGGCAAGGCATGGAGCGGCTGGTCTTGTCAGAATTTCCTACGCAA GATGCGAGCGGCGGCGCGCCGGGGCTAAACTTTCGGCAGTTCGTAGATGC GCTCGCTCGTTGTGGCCTCCTCGGGTTTCCAGGCAAAAAAGGCCAAGAGC GCCTGTCCGTAGCCGAGCGCGCGCAAGCAATATTCACCGAGCAGATGAAG ATCCTCGACGGCCAACACGTTGACGCGAGGCTGCGGCAACTGGTGCAACC GCCAGCTGCTGTCAGCCACAAAAGGCCAAGAGCGCCTGTCCGTAGCCGAG CGCGCGCAAGCAATATTCACCGAGCAGATGAAGATCCTCGACGGCCAACA CGTTGACGCGAGGCTGCGGCAACTGGTGCAACCGCCAGCTGCTGTCAGCC AC back to top
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