mRNA_P-fluviatile_contig1.346.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.346.1
Unique NamemRNA_P-fluviatile_contig1.346.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4165619..4166671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1053
Cds size552
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.9092977-UTR-P-fluviatile_contig1:4165618..41661191622815269.9092977-UTR-P-fluviatile_contig1:4165618..4166119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4165619..4166119 +
1693561321.7325995-UTR-P-fluviatile_contig1:4165618..41661191693561321.7325995-UTR-P-fluviatile_contig1:4165618..4166119Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4165619..4166119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.9248185-CDS-P-fluviatile_contig1:4166119..41666711622815269.9248185-CDS-P-fluviatile_contig1:4166119..4166671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4166120..4166671 +
1693561321.7459757-CDS-P-fluviatile_contig1:4166119..41666711693561321.7459757-CDS-P-fluviatile_contig1:4166119..4166671Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4166120..4166671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.346.1prot_P-fluviatile_contig1.346.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4166120..4166671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.346.1

>prot_P-fluviatile_contig1.346.1 ID=prot_P-fluviatile_contig1.346.1|Name=mRNA_P-fluviatile_contig1.346.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=184bp
MPQSCGFWFLQRLALTHSRNTQLVVGLQNEAIMSNADNDSNARLFCRRVV
CCCTASRRVSFQQPRPSPLSALNLLLSTFPHVSRLPPNVVMLPVGHPLDL
LRLRRMSLPHPGKSTPTTQTDDDEKRAELLDGWMDGWMDGSICFVGGRIG
LLHFDEPPDQTKRTTPEKKYPNGGVVGGLWGAM*
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mRNA from alignment at P-fluviatile_contig1:4165619..4166671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.346.1 ID=mRNA_P-fluviatile_contig1.346.1|Name=mRNA_P-fluviatile_contig1.346.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1053bp|location=Sequence derived from alignment at P-fluviatile_contig1:4165619..4166671+ (Porterinema fluviatile SAG_2381)
GTGCGCGGTGGTCTCATTTCAGCGCGAGGGGTCCTGCTTGCCGTCCGTTT
CACAAATGCCTGCGTGGTCCGGCGACGGTCCACGCGCAGTCTTTGTTGGT
TTCACTAGGTGTGAGGTAGATTTGCTCTCTTTTTGCGGTCCTCGCCTTCC
TGACACATTTGGCCTTGGCTCCTCCGCTGTTTTGTCCTTCCTGCGTGCTT
GTTGTCTTCTCTCGTGTCGTGGACCTCTAGGACTTTGCCTTGTTTCCTCT
GAAACAGCAGTGGCTTGCTGTGTGGTAGCTTGCGTGCAGGCCTCTCCTTT
CTTTTCGAAACATTTGGCATGTGTGTGTGATGTGGCGCCTTCAATCTTGA
TCAGGCGCCGCCCAGCGGACAACCGATCGGCTGACGGCATGTTCGGGAAA
AAGAAGCGCAGGGGCAAAAGCACCTTCTCGCTCCATTGTCGTTTTATCGC
TCTTTTTCCTCTCTGCGCGCACTACACACTTTTCCATGCACAACCACAAC
AATGCCACAATCATGTGGGTTCTGGTTTCTACAGAGACTTGCCCTGACGC
ATTCCCGAAATACACAGCTCGTCGTTGGGCTTCAAAACGAGGCGATTATG
TCGAATGCTGATAACGACTCTAACGCCCGCCTGTTTTGTCGTCGGGTTGT
TTGTTGTTGCACCGCCAGCCGTAGGGTATCCTTTCAACAGCCGCGACCCT
CCCCCCTCTCAGCCCTCAACCTCCTTCTCTCCACGTTTCCTCACGTCTCA
CGCCTCCCACCGAATGTTGTAATGCTGCCTGTTGGCCATCCCCTTGACCT
CCTGCGTTTACGCCGCATGTCGTTGCCGCACCCCGGCAAATCGACGCCAA
CAACACAAACGGACGACGACGAAAAACGGGCTGAATTGCTGGATGGATGG
ATGGATGGATGGATGGATGGCTCGATTTGCTTCGTGGGTGGACGAATCGG
CTTATTGCACTTTGACGAACCGCCGGATCAAACAAAACGCACCACACCTG
AAAAAAAATACCCTAACGGCGGGGTTGTGGGGGGATTGTGGGGGGCGATG
TAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4165619..4166671+

>mRNA_P-fluviatile_contig1.346.1 ID=mRNA_P-fluviatile_contig1.346.1|Name=mRNA_P-fluviatile_contig1.346.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1104bp|location=Sequence derived from alignment at P-fluviatile_contig1:4165619..4166671+ (Porterinema fluviatile SAG_2381)
ATGCCACAATCATGTGGGTTCTGGTTTCTACAGAGACTTGCCCTGACGCA
TTCCCGAAATACACAGCTCGTCGTTGGGCTTCAAAACGAGGCGATTATGT
CGAATGCTGATAACGACTCTAACGCCCGCCTGTTTTGTCGTCGGGTTGTT
TGTTGTTGCACCGCCAGCCGTAGGGTATCCTTTCAACAGCCGCGACCCTC
CCCCCTCTCAGCCCTCAACCTCCTTCTCTCCACGTTTCCTCACGTCTCAC
GCCTCCCACCGAATGTTGTAATGCTGCCTGTTGGCCATCCCCTTGACCTC
CTGCGTTTACGCCGCATGTCGTTGCCGCACCCCGGCAAATCGACGCCAAC
AACACAAACGGACGACGACGAAAAACGGGCTGAATTGCTGGATGGATGGA
TGGATGGATGGATGGATGGCTCGATTTGCTTCGTGGGTGGACGAATCGGC
TTATTGCACTTTGACGAACCGCCGGATCAAACAAAACGCACCACACCTGA
AAAAAAATACCCTAACGGCGGGGTTGTGGGGGGATTGTGGGGGGCGATGT
AGATGCCACAATCATGTGGGTTCTGGTTTCTACAGAGACTTGCCCTGACG
CATTCCCGAAATACACAGCTCGTCGTTGGGCTTCAAAACGAGGCGATTAT
GTCGAATGCTGATAACGACTCTAACGCCCGCCTGTTTTGTCGTCGGGTTG
TTTGTTGTTGCACCGCCAGCCGTAGGGTATCCTTTCAACAGCCGCGACCC
TCCCCCCTCTCAGCCCTCAACCTCCTTCTCTCCACGTTTCCTCACGTCTC
ACGCCTCCCACCGAATGTTGTAATGCTGCCTGTTGGCCATCCCCTTGACC
TCCTGCGTTTACGCCGCATGTCGTTGCCGCACCCCGGCAAATCGACGCCA
ACAACACAAACGGACGACGACGAAAAACGGGCTGAATTGCTGGATGGATG
GATGGATGGATGGATGGATGGCTCGATTTGCTTCGTGGGTGGACGAATCG
GCTTATTGCACTTTGACGAACCGCCGGATCAAACAAAACGCACCACACCT
GAAAAAAAATACCCTAACGGCGGGGTTGTGGGGGGATTGTGGGGGGCGAT
GTAG
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