mRNA_P-fluviatile_contig1.340.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.340.1
Unique NamemRNA_P-fluviatile_contig1.340.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4131678..4132217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative LRR domain-encoding regions on the opposite strand of gene Ec-12_003110.1
Ec32 orthologEc-12_003110.5
Exons1
Model size540
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.8538184-UTR-P-fluviatile_contig1:4131677..41319111622815269.8538184-UTR-P-fluviatile_contig1:4131677..4131911Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4131678..4131911 +
1693561321.662673-UTR-P-fluviatile_contig1:4131677..41319111693561321.662673-UTR-P-fluviatile_contig1:4131677..4131911Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4131678..4131911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.8653703-CDS-P-fluviatile_contig1:4131911..41322171622815269.8653703-CDS-P-fluviatile_contig1:4131911..4132217Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4131912..4132217 +
1693561321.6728995-CDS-P-fluviatile_contig1:4131911..41322171693561321.6728995-CDS-P-fluviatile_contig1:4131911..4132217Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4131912..4132217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.340.1prot_P-fluviatile_contig1.340.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4131912..4132217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.340.1

>prot_P-fluviatile_contig1.340.1 ID=prot_P-fluviatile_contig1.340.1|Name=mRNA_P-fluviatile_contig1.340.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MPAVKAKREIVHPACFAPSKRNNPLAAPQSHSVQSSRCTHDGFGFSPPPL
SVLQFFCLPLPSSPHLNLSNFPLAFLAPAPAHAPSSRGRVVNGLTTKACK
T*
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mRNA from alignment at P-fluviatile_contig1:4131678..4132217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.340.1 ID=mRNA_P-fluviatile_contig1.340.1|Name=mRNA_P-fluviatile_contig1.340.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=540bp|location=Sequence derived from alignment at P-fluviatile_contig1:4131678..4132217+ (Porterinema fluviatile SAG_2381)
ACCGGAAAAGACACCAGACGTGTCCACTGTCTGTGGCGCGACGCTCAATC
TGATTACTTCTAGAATGTCGTCGGGAATCGGGAAACAAAACCAAAGCAGC
AAAGCATCCCCCTCTGCGTCCTTGTCTTGAGGCACACCGCAGCCTTGTTC
GAGCTCATGCGAGCATGCTTCACTGCCACTTGACCTGGAATCAACGTTCT
TATTCCCCAGGTTAGTCCTGCGGCTTCTAACGGGATGCCTGCCGTCAAGG
CGAAGAGGGAAATTGTGCATCCCGCTTGTTTTGCGCCGAGTAAAAGGAAT
AACCCCCTTGCAGCACCCCAATCTCATTCAGTTCAGTCTTCGCGTTGCAC
ACACGATGGATTTGGTTTCAGCCCGCCTCCTCTTTCGGTGTTACAGTTTT
TCTGCTTGCCTCTCCCTTCCTCCCCCCATCTCAACCTCTCTAACTTCCCT
CTAGCTTTTCTCGCCCCTGCTCCTGCCCATGCCCCGTCCTCTCGAGGACG
CGTGGTCAATGGTCTAACAACGAAGGCATGCAAAACATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4131678..4132217+

>mRNA_P-fluviatile_contig1.340.1 ID=mRNA_P-fluviatile_contig1.340.1|Name=mRNA_P-fluviatile_contig1.340.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig1:4131678..4132217+ (Porterinema fluviatile SAG_2381)
ATGCCTGCCGTCAAGGCGAAGAGGGAAATTGTGCATCCCGCTTGTTTTGC
GCCGAGTAAAAGGAATAACCCCCTTGCAGCACCCCAATCTCATTCAGTTC
AGTCTTCGCGTTGCACACACGATGGATTTGGTTTCAGCCCGCCTCCTCTT
TCGGTGTTACAGTTTTTCTGCTTGCCTCTCCCTTCCTCCCCCCATCTCAA
CCTCTCTAACTTCCCTCTAGCTTTTCTCGCCCCTGCTCCTGCCCATGCCC
CGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACAACGAAGGCATGCAAA
ACATGAATGCCTGCCGTCAAGGCGAAGAGGGAAATTGTGCATCCCGCTTG
TTTTGCGCCGAGTAAAAGGAATAACCCCCTTGCAGCACCCCAATCTCATT
CAGTTCAGTCTTCGCGTTGCACACACGATGGATTTGGTTTCAGCCCGCCT
CCTCTTTCGGTGTTACAGTTTTTCTGCTTGCCTCTCCCTTCCTCCCCCCA
TCTCAACCTCTCTAACTTCCCTCTAGCTTTTCTCGCCCCTGCTCCTGCCC
ATGCCCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACAACGAAGGCA
TGCAAAACATGA
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