mRNA_P-fluviatile_contig1.336.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.336.1
Unique NamemRNA_P-fluviatile_contig1.336.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.890e-45
Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 3
Query:   30 QTVEGEGDHSGEGVEDGDSSGEDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL 335
            QTVEGEGDHSGEGVEDGDSS EDTRETASGQMD+L LVDDDDSMESD+EIHAMEIPDG RIQA TPAALDSSLLQRG+LVRL +GW GG+ITRQSQERT HL
Sbjct:   69 QTVEGEGDHSGEGVEDGDSSDEDTRETASGQMDELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHL 170          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.530e-43
Identity = 95/116 (81.90%), Postives = 100/116 (86.21%), Query Frame = 3
Query:    3 NDGCGGGDDQTVEGEGDHSGEGVEDGDSSGEDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHLTTTVC 350
            NDGCGGGDDQTVEGEGDHSGEGVEDGDSS EDTRETA  QMD+LSLVDDDDSMESDDE H MEIPDG  IQA TPAALDSSLLQRGVLV L +GWFGG+ITRQS+      +TTVC
Sbjct:  597 NDGCGGGDDQTVEGEGDHSGEGVEDGDSSDEDTRETARDQMDELSLVDDDDSMESDDETHGMEIPDGFHIQASTPAALDSSLLQRGVLVGLGMGWFGGLITRQSRSVLATFSTTVC 712          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.970e-39
Identity = 116/242 (47.93%), Postives = 128/242 (52.89%), Query Frame = 3
Query:    3 NDGCGGGDDQTVEGEGDHSGEGVEDG-------------------------------------DSSG--------------------------------------EDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL---TTTVCIST*TKVRAA*SCRWKCTEEIRMRWWALGSCLRGARSSRWMGAELQPR 494
            NDGCGGGDDQTVEGEGDHSG+GVEDG                                     DSS                                       EDTRETASGQM++LSLVDDDDSMESDDEIHAMEIPDG  IQA TPAA+DSSLLQRGVLVRL +GWFGGVITR+SQERT HL      + +   T         ++   +  +  W L   L  ARSSRWMGAELQ R
Sbjct:  131 NDGCGGGDDQTVEGEGDHSGDGVEDGXFRLFEECGTAMTVDGLGDDRITLEGLDKPYTFAGDGDSSDDEESSETSNDGCXXXXXXTVEGEGDXXXXXXXXXXXSDEDTRETASGQMEELSLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWIL---LGRARSSRWMGAELQRR 369          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JS09_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS09_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.400e-39
Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 3
Query:    3 NDGCGGGDDQTVEGEGDHSGEGVEDGDSSGEDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQS 314
            ND CGGGDDQTVEGE DH GEGVEDGDSS EDTRETASGQMD+LSLV DDD MESDDEIHAMEIPDG R+QA TPAALDSSLLQ GVL RL +GWFGG ITRQS
Sbjct:  393 NDECGGGDDQTVEGEKDHGGEGVEDGDSSDEDTRETASGQMDELSLVADDDRMESDDEIHAMEIPDGFRVQASTPAALDSSLLQLGVLGRLGMGWFGGAITRQS 496          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 4.890e-34
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 2
Query:  335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRERRPNVTLIDQEG 556
            YDYRV+LDLDQSTRSMKLPLEMYRGDPDAVVGSW+LLERSTVEQVDGGGAAATLG SRAGRERRPNVTLIDQEG
Sbjct:  643 YDYRVHLDLDQSTRSMKLPLEMYRGDPDAVVGSWILLERSTVEQVDGGGAAATLGGSRAGRERRPNVTLIDQEG 716          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.690e-29
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 2
Query:  335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRERRPNVTLIDQE 553
            YDYRV+LDLDQSTR MKL LEMY+GDPDAVVGSW+LLER+TVEQVDG GA  T GV  AGRERRPNV LIDQE
Sbjct:   72 YDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVDGSGATGTSGV--AGRERRPNVILIDQE 142          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.560e-28
Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 3
Query:  102 RETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL 335
            R TASGQM++LSLVDDDDSMESDDEI AMEIPDG RIQA TPAALDSS  QRGVLVRL +GWFG VITRQSQERT HL
Sbjct:  116 RATASGQMNELSLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHL 193          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 9.820e-27
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 2
Query:  335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRE 520
            YDY ++LDLDQSTRSMKLPLEMYR DPDAVVGSW+LLERSTVEQVDGGG AA+LGVSRAGRE
Sbjct:   60 YDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVDGGGNAASLGVSRAGRE 121          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.760e-25
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 2
Query:  335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRERRPNVTLID 547
            YDYRV+LDLD+STRSMKLPLEMY+GDPDAVVGSW+LLER+TVEQVDG GA  T GV  AGRERRPNV LID
Sbjct:  602 YDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVDGSGATGTSGV--AGRERRPNVILID 670          
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5K4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S7_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.870e-17
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   81 DSSGEDTRETASGQMDKLSLVDDDDSMES---DDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL 335
            DSS ED  + +  Q D+L+L+DDDDSME    +DEI  MEIP G RIQ   P ALD  LL+RGVLVRL +GWFGG+IT+QSQ+ T HL
Sbjct:  150 DSSDEDDGDISQPQTDELALLDDDDSMEPQDPEDEIQGMEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHL 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2B3_9PHAE1.890e-4588.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF1_ECTSI1.530e-4381.90C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L5J8_9PHAE2.970e-3947.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS09_9PHAE5.400e-3985.58DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JXH0_9PHAE4.890e-3495.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHL7_9PHAE6.690e-2982.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT4_9PHAE2.560e-2884.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW4_9PHAE9.820e-2788.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE2.760e-2583.10C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4S7_9PHAE3.870e-1760.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4085664..4087073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D8LRF1
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1252
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.336.1prot_P-fluviatile_contig1.336.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4085944..4086183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815323.4223711-UTR-P-fluviatile_contig1:4085663..40857681622815323.4223711-UTR-P-fluviatile_contig1:4085663..4085768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4085664..4085768 +
1693561495.2283545-UTR-P-fluviatile_contig1:4085663..40857681693561495.2283545-UTR-P-fluviatile_contig1:4085663..4085768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4085664..4085768 +
1622815323.437946-UTR-P-fluviatile_contig1:4085926..40859431622815323.437946-UTR-P-fluviatile_contig1:4085926..4085943Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4085927..4085943 +
1693561495.2441826-UTR-P-fluviatile_contig1:4085926..40859431693561495.2441826-UTR-P-fluviatile_contig1:4085926..4085943Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4085927..4085943 +
1622815323.4602344-UTR-P-fluviatile_contig1:4086183..40870731622815323.4602344-UTR-P-fluviatile_contig1:4086183..4087073Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4086184..4087073 +
1693561495.2712185-UTR-P-fluviatile_contig1:4086183..40870731693561495.2712185-UTR-P-fluviatile_contig1:4086183..4087073Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4086184..4087073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815323.448592-CDS-P-fluviatile_contig1:4085943..40861831622815323.448592-CDS-P-fluviatile_contig1:4085943..4086183Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4085944..4086183 +
1693561495.256561-CDS-P-fluviatile_contig1:4085943..40861831693561495.256561-CDS-P-fluviatile_contig1:4085943..4086183Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4085944..4086183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.336.1

>prot_P-fluviatile_contig1.336.1 ID=prot_P-fluviatile_contig1.336.1|Name=mRNA_P-fluviatile_contig1.336.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=80bp
MDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVR
LSIGWFGGVITRQSQERTHHLTTTVCIST*
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mRNA from alignment at P-fluviatile_contig1:4085664..4087073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.336.1 ID=mRNA_P-fluviatile_contig1.336.1|Name=mRNA_P-fluviatile_contig1.336.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1410bp|location=Sequence derived from alignment at P-fluviatile_contig1:4085664..4087073+ (Porterinema fluviatile SAG_2381)
GCAACGATGGGTGCGGGGGGGGGGATGACCAGACGGTTGAGGGCGAGGGG GATCACAGCGGCGAGGGAGTGGAGGACGGCGATTCTAGCGGCGAAGACAC TCGTGGTAAGTTGGATGCCCACCAGGGTTTTTCACTCCCCTGCTTGGTTG TCGTTGCGTTTCCTGTTGCTGCTGCTTTTGCCCTTGCCGTTGCCGTTAAA CATATGTTTGCGTAGATGACATATCAGTTTCTGCGACATTGTCGTTTGTG CCCGTCGTTGCAGAGACGGCCAGTGGCCAGATGGACAAGCTGAGTCTTGT GGACGACGACGACAGCATGGAATCGGACGACGAGATTCACGCCATGGAGA TTCCGGATGGGTCTCGCATTCAAGCATTTACACCGGCAGCTCTTGACAGT TCGTTACTGCAGCGTGGAGTACTCGTTAGGCTGAGCATTGGGTGGTTTGG GGGGGTGATCACTCGACAGTCTCAGGAGCGCACTCACCACCTTACGACTA CCGTGTGTATCTCGACCTAGACCAAAGTACGCGCAGCATGAAGCTGCCGT TGGAAATGTACAGAGGAGATCCGGATGCGGTGGTGGGCTCTTGGGTCTTG CTTGAGAGGAGCACGGTCGAGCAGGTGGATGGGGGCGGAGCTGCAGCCAC GTTGGGCGTTAGTAGAGCGGGAAGGGAACGCAGGCCGAACGTGACCCTTA TCGACCAAGAAGGTTGAAGCCTTGGGAGTTTGTTTTCATATTTGTACTCA ACCGTGAGCATAGCTGCTGCGGTGTGTGATCCGGTCTAAGTCTGTTGTAC AAGCATGCCGCCAAGTCGACGGCCAGTAATCTTGGTGCCTGGTGAATGGA CAGTATGGGGATGGTACGGCGAAGTATGGACGTGCTGTATAGGGATGATG CAACTTATTTTTCCGCATGAAATTACACGCCAATTTCCACGTCCTGTCGA TGTTTTTTCATAGCTGCGAGTCACCAAAGGGCGTCCTGGTGCGCCTCTGG AGCACTCGACGGTGAAATACGAACAAGAACCCCGTTTTCAGCGACCAAAT GTCTGATCGGAATAAGAACATGGCCATAAGAACATGTGCTGGGGTTGAGG CAGCCAATAAGCATCGAGCCTCACGCCAAATTTGACGTTCTTAAGAGCGG GCGCCATCTGTACATTTTTGGGCATTTTTCAACGTAAAATGAGTCAAAAG CACGGAGGGTGGAAGAGAGTGTTTCTATTTAATAATATTTGCTTTAGGTC AAGTGTGTCGTTCGGTAATTTGTCGGAAGGCAGAACGTCGGCCAGGTGAA GGAGAACAGCTCACCTCTCGAAAATGAGCTACAGTACTCCGGTATTACTT GGCGCGACTAACTAAAGCAATTCGCTGAGTTGAACAAGACAATTTATAAG GGTTCAGTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4085664..4087073+

>mRNA_P-fluviatile_contig1.336.1 ID=mRNA_P-fluviatile_contig1.336.1|Name=mRNA_P-fluviatile_contig1.336.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=480bp|location=Sequence derived from alignment at P-fluviatile_contig1:4085664..4087073+ (Porterinema fluviatile SAG_2381)
ATGGACAAGCTGAGTCTTGTGGACGACGACGACAGCATGGAATCGGACGA
CGAGATTCACGCCATGGAGATTCCGGATGGGTCTCGCATTCAAGCATTTA
CACCGGCAGCTCTTGACAGTTCGTTACTGCAGCGTGGAGTACTCGTTAGG
CTGAGCATTGGGTGGTTTGGGGGGGTGATCACTCGACAGTCTCAGGAGCG
CACTCACCACCTTACGACTACCGTGTGTATCTCGACCTAGATGGACAAGC
TGAGTCTTGTGGACGACGACGACAGCATGGAATCGGACGACGAGATTCAC
GCCATGGAGATTCCGGATGGGTCTCGCATTCAAGCATTTACACCGGCAGC
TCTTGACAGTTCGTTACTGCAGCGTGGAGTACTCGTTAGGCTGAGCATTG
GGTGGTTTGGGGGGGTGATCACTCGACAGTCTCAGGAGCGCACTCACCAC
CTTACGACTACCGTGTGTATCTCGACCTAG
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