mRNA_P-fluviatile_contig1.336.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.890e-45 Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 3
Query: 30 QTVEGEGDHSGEGVEDGDSSGEDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL 335
QTVEGEGDHSGEGVEDGDSS EDTRETASGQMD+L LVDDDDSMESD+EIHAMEIPDG RIQA TPAALDSSLLQRG+LVRL +GW GG+ITRQSQERT HL
Sbjct: 69 QTVEGEGDHSGEGVEDGDSSDEDTRETASGQMDELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHL 170
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI) HSP 1 Score: 171 bits (434), Expect = 1.530e-43 Identity = 95/116 (81.90%), Postives = 100/116 (86.21%), Query Frame = 3
Query: 3 NDGCGGGDDQTVEGEGDHSGEGVEDGDSSGEDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHLTTTVC 350
NDGCGGGDDQTVEGEGDHSGEGVEDGDSS EDTRETA QMD+LSLVDDDDSMESDDE H MEIPDG IQA TPAALDSSLLQRGVLV L +GWFGG+ITRQS+ +TTVC
Sbjct: 597 NDGCGGGDDQTVEGEGDHSGEGVEDGDSSDEDTRETARDQMDELSLVDDDDSMESDDETHGMEIPDGFHIQASTPAALDSSLLQRGVLVGLGMGWFGGLITRQSRSVLATFSTTVC 712
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.970e-39 Identity = 116/242 (47.93%), Postives = 128/242 (52.89%), Query Frame = 3
Query: 3 NDGCGGGDDQTVEGEGDHSGEGVEDG-------------------------------------DSSG--------------------------------------EDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL---TTTVCIST*TKVRAA*SCRWKCTEEIRMRWWALGSCLRGARSSRWMGAELQPR 494
NDGCGGGDDQTVEGEGDHSG+GVEDG DSS EDTRETASGQM++LSLVDDDDSMESDDEIHAMEIPDG IQA TPAA+DSSLLQRGVLVRL +GWFGGVITR+SQERT HL + + T ++ + + W L L ARSSRWMGAELQ R
Sbjct: 131 NDGCGGGDDQTVEGEGDHSGDGVEDGXFRLFEECGTAMTVDGLGDDRITLEGLDKPYTFAGDGDSSDDEESSETSNDGCXXXXXXTVEGEGDXXXXXXXXXXXSDEDTRETASGQMEELSLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWIL---LGRARSSRWMGAELQRR 369
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JS09_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS09_9PHAE) HSP 1 Score: 159 bits (402), Expect = 5.400e-39 Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 3
Query: 3 NDGCGGGDDQTVEGEGDHSGEGVEDGDSSGEDTRETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQS 314
ND CGGGDDQTVEGE DH GEGVEDGDSS EDTRETASGQMD+LSLV DDD MESDDEIHAMEIPDG R+QA TPAALDSSLLQ GVL RL +GWFGG ITRQS
Sbjct: 393 NDECGGGDDQTVEGEKDHGGEGVEDGDSSDEDTRETASGQMDELSLVADDDRMESDDEIHAMEIPDGFRVQASTPAALDSSLLQLGVLGRLGMGWFGGAITRQS 496
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.890e-34 Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 2
Query: 335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRERRPNVTLIDQEG 556
YDYRV+LDLDQSTRSMKLPLEMYRGDPDAVVGSW+LLERSTVEQVDGGGAAATLG SRAGRERRPNVTLIDQEG
Sbjct: 643 YDYRVHLDLDQSTRSMKLPLEMYRGDPDAVVGSWILLERSTVEQVDGGGAAATLGGSRAGRERRPNVTLIDQEG 716
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 119 bits (299), Expect = 6.690e-29 Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 2
Query: 335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRERRPNVTLIDQE 553
YDYRV+LDLDQSTR MKL LEMY+GDPDAVVGSW+LLER+TVEQVDG GA T GV AGRERRPNV LIDQE
Sbjct: 72 YDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVDGSGATGTSGV--AGRERRPNVILIDQE 142
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.560e-28 Identity = 66/78 (84.62%), Postives = 69/78 (88.46%), Query Frame = 3
Query: 102 RETASGQMDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL 335
R TASGQM++LSLVDDDDSMESDDEI AMEIPDG RIQA TPAALDSS QRGVLVRL +GWFG VITRQSQERT HL
Sbjct: 116 RATASGQMNELSLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHL 193
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE) HSP 1 Score: 113 bits (282), Expect = 9.820e-27 Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 2
Query: 335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRE 520
YDY ++LDLDQSTRSMKLPLEMYR DPDAVVGSW+LLERSTVEQVDGGG AA+LGVSRAGRE
Sbjct: 60 YDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVDGGGNAASLGVSRAGRE 121
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.760e-25 Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 2
Query: 335 YDYRVYLDLDQSTRSMKLPLEMYRGDPDAVVGSWVLLERSTVEQVDGGGAAATLGVSRAGRERRPNVTLID 547
YDYRV+LDLD+STRSMKLPLEMY+GDPDAVVGSW+LLER+TVEQVDG GA T GV AGRERRPNV LID
Sbjct: 602 YDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVDGSGATGTSGV--AGRERRPNVILID 670
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Match: A0A6H5K4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S7_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 3.870e-17 Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 3
Query: 81 DSSGEDTRETASGQMDKLSLVDDDDSMES---DDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRLSIGWFGGVITRQSQERTHHL 335
DSS ED + + Q D+L+L+DDDDSME +DEI MEIP G RIQ P ALD LL+RGVLVRL +GWFGG+IT+QSQ+ T HL
Sbjct: 150 DSSDEDDGDISQPQTDELALLDDDDSMEPQDPEDEIQGMEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHL 237 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.336.1 >prot_P-fluviatile_contig1.336.1 ID=prot_P-fluviatile_contig1.336.1|Name=mRNA_P-fluviatile_contig1.336.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=80bp MDKLSLVDDDDSMESDDEIHAMEIPDGSRIQAFTPAALDSSLLQRGVLVRback to top mRNA from alignment at P-fluviatile_contig1:4085664..4087073+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.336.1 ID=mRNA_P-fluviatile_contig1.336.1|Name=mRNA_P-fluviatile_contig1.336.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1410bp|location=Sequence derived from alignment at P-fluviatile_contig1:4085664..4087073+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:4085664..4087073+ >mRNA_P-fluviatile_contig1.336.1 ID=mRNA_P-fluviatile_contig1.336.1|Name=mRNA_P-fluviatile_contig1.336.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=480bp|location=Sequence derived from alignment at P-fluviatile_contig1:4085664..4087073+ (Porterinema fluviatile SAG_2381)back to top |