mRNA_P-fluviatile_contig1.334.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.334.1
Unique NamemRNA_P-fluviatile_contig1.334.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.334.1 vs. uniprot
Match: D8LLR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR3_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.610e-38
Identity = 72/87 (82.76%), Postives = 79/87 (90.80%), Query Frame = 2 
Query: 1226 MQLVTVDDVLAMMGDTSKLAEKGELEKLVEAIGRVFSTNDGTNIVDGPDYIPYPTGYSGEVNKEKKDAWDYNVNTPLKPVKPVYRKE 1486
            MQLVTVDDVL +MGD+S LAEKGELEKLVEA+GRVFSTNDGT      DYIP+PTGYSGEVNK++KDAWDYNVNTPLKPVKPVY+KE
Sbjct:   92 MQLVTVDDVLTIMGDSSSLAEKGELEKLVEAVGRVFSTNDGT------DYIPFPTGYSGEVNKKQKDAWDYNVNTPLKPVKPVYKKE 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLR3_ECTSI1.610e-3882.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4039665..4043774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004800.1
Exons3
Model size2538
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.334.1prot_P-fluviatile_contig1.334.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4040714..4042708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.8059194-UTR-P-fluviatile_contig1:4039664..40407131622815322.8059194-UTR-P-fluviatile_contig1:4039664..4040713Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4039665..4040713 -
1693561494.8707101-UTR-P-fluviatile_contig1:4039664..40407131693561494.8707101-UTR-P-fluviatile_contig1:4039664..4040713Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4039665..4040713 -
1622815322.86063-UTR-P-fluviatile_contig1:4042708..40437741622815322.86063-UTR-P-fluviatile_contig1:4042708..4043774Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4042709..4043774 -
1693561494.9067643-UTR-P-fluviatile_contig1:4042708..40437741693561494.9067643-UTR-P-fluviatile_contig1:4042708..4043774Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4042709..4043774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815322.822758-CDS-P-fluviatile_contig1:4040713..40407881622815322.822758-CDS-P-fluviatile_contig1:4040713..4040788Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4040714..4040788 -
1693561494.8805513-CDS-P-fluviatile_contig1:4040713..40407881693561494.8805513-CDS-P-fluviatile_contig1:4040713..4040788Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4040714..4040788 -
1622815322.8368642-CDS-P-fluviatile_contig1:4041739..40419281622815322.8368642-CDS-P-fluviatile_contig1:4041739..4041928Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4041740..4041928 -
1693561494.8904889-CDS-P-fluviatile_contig1:4041739..40419281693561494.8904889-CDS-P-fluviatile_contig1:4041739..4041928Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4041740..4041928 -
1622815322.85122-CDS-P-fluviatile_contig1:4042549..40427081622815322.85122-CDS-P-fluviatile_contig1:4042549..4042708Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4042550..4042708 -
1693561494.898351-CDS-P-fluviatile_contig1:4042549..40427081693561494.898351-CDS-P-fluviatile_contig1:4042549..4042708Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4042550..4042708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.334.1

>prot_P-fluviatile_contig1.334.1 ID=prot_P-fluviatile_contig1.334.1|Name=mRNA_P-fluviatile_contig1.334.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=141bp
MREHGRGSQRVLARQRSTRPAKEGWSYGEQGGQHLKRLQKSPSLSSCSTL
ASLMQLVTVDDVLAMMGDTSKLAEKGELEKLVEAIGRVFSTNDGTNIVDG
PDYIPYPTGYSGEVNKEKKDAWDYNVNTPLKPVKPVYRKE*
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mRNA from alignment at P-fluviatile_contig1:4039665..4043774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.334.1 ID=mRNA_P-fluviatile_contig1.334.1|Name=mRNA_P-fluviatile_contig1.334.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4110bp|location=Sequence derived from alignment at P-fluviatile_contig1:4039665..4043774- (Porterinema fluviatile SAG_2381)
CTGGCTTGCCAGGAAGACGGCTGCTCGGTGGAGACAGTGGCCTCCTTGTT
GGATCAGCTCAAGGCGAAGAAGAAGGAGCTCCAGGTATATACATTTCGGT
GTCACAGGAAATCAAATCAAAGAGGTATTCGGACGCTCAAATCGGCGAGT
ATGTACGACCGGAATCCCTTGCCAGCTCGCACGGATGTTGGCCAATTTAA
CAGACACGTTCCGTTTTTTGTGGTGTTCGTATGGGGCCAAAACGTTCAAC
ACTGGATGAACGTGCGCACACGCTCCGCCTACGATCAGAAGCACTGACTC
GAGTTTTCAAAATTTGGGAAAAGCAGCAATCAGGAAACTGAGGGTAGTTG
GCAGACGGTGTTTGTCAAACATCGCGGGGATTCCTACCAGGGGTCAGGGC
GGACTGCAGAGGTTGCTCGGGACTGTCAGGTGTCAATTGGCGCGAATGTG
CAAGTGGACACGCGAACCTTCCTCTGGTCGCATCATTTTATCGCTTAATG
CAAACTAGTACATTTAAGAGACGGGACGAATACCCCCCCCTTCAACATAG
GCCCTTGGCAAATAAAAACATGTGAAGTCCGCCCTATTCCGAAACGAAAG
CCCCGGGGTGCCTATTTCAGTGTTTTAAGAAAGCGCATTGGGCGCTCAGC
CAACGCCCCGCAGGACGTGCGGAAATTCAGGAGGGGGGGGGATGTACCTG
CCGCCGAAGCAGGCAGGTGCCACAAAATCAGAACTTAAGAGTGGCCGGAG
CAATAGATTTTTTATACTCAGTTGTTTCCATTTTGCATGAAAGAGGTTGT
TTTTCGAAACTTTTGAAGAAATACCGCCACCGATTCTAGAGCTACAGGCG
AGGAGCACACGACCTGACCAATGAACATGAGGTATCAGGACCTTTTTCTT
ACAAACGCCCCGAGCGGCCCCTTGTCAATTTTATAAGGCGAACGTTGCGC
TCGGCGCGATAGGTATTTTTCGGTTGCCCCGTGCAGCCTAAACTCCGGCC
TTGACGGTAAGTCCACGTGATCCCAAGTCTGTTGTCTGCTGCTGCGAGTC
GAACGGGCATTTTCAGATGAGAGAACATGGCCGGGGAAGTCAAAGAGTTC
TTGCGAGGCAACGGTCAACTCGGCCGGCCAAGGAGGGTTGGTCTTACGGA
GAGCAGGGCGGGCAGCACCTGAAACGGCTGCAAAAGTCACCGTCGCTTTC
GAGCTGTTCTACTCTTGCATCGTTGGTGCGTTTAGATGGGGGCGTTAACA
TCAAGAAATCACAGCCATCAGATGCTGGTCGCGTTTGCGGTTGGGCACGA
CTCAGATTCGCCGGTGTAGCACCTGAAATGTACGATATGGAATTTTGTGC
TCCTTGCGTGCGCCAAGTCTTGGCGTTGAGATATGCTCTTTGTTAGAGGA
TTATTTTCAACGCAGCCTTTCAGCAACTCGCTGAGACGACGCCAGCGACT
GCGAAGTGCAGTGTGATCCTCAACGAGTGATGACGTTTCGCATCTCACAG
CTGTAAAACACGAAAGCAACGATTATGATCAGCACATGCAAAGGGAAGCT
CCGCCGCATGTGCGCACCGATGGAGGGCGCGTACCTCTCTCCCTTTCATC
TCGTTCGTTCCGCACTTACTTATTTCGACAAAAAAAACTATTCTTACTCC
CCGCCCTGACCCCTCTGAACATGGTTCGGGTGAAACTTCTAAGGCCACCA
TGATTGGAGTTGCTCGCGGTGGCGTTACTGTGAGTATCAGCAACCTTGCC
TAAACGACAACTCACCGATGGCACGTGAACACCATAGTCTTTCCACCGAC
CCTACCCTGGCCGGCCCTTGGTTCCTCTGTTGCGTGCATTTCGCAGATGC
AACTGGTGACCGTGGACGACGTCCTGGCCATGATGGGCGACACGTCCAAA
CTGGCAGAGAAGGGCGAGCTGGAGAAACTTGTCGAGGCTATTGGGCGCGT
TTTCTCGACCAACGACGGCACCAACATCGTCGACGGCCCGGACTACATCC
CGTACCCCACGGGCTACTCCGGAGAGGTCAACAAGGTGCGTTCCAAGCTT
TGTTGCTTGATTTGTTGTGCTTAAAAAAGAAGCAAAAAGCGAACGAAATA
ACAGCATATTAGTTTTCATCAAAACACCCGTATAATTATTAGTTTCGCTC
AACGTGCGTTGTGTAAGCCGACACATTTTTCTTCCCAACTTTTCCTCACT
GGACATCTGATTTGCCCGTCCTCTCGATCACGGGAAAGTTATGTGGCGTT
TCTTGCTGGTCAAACCGAGTTGTAGTAGTACTGTAAATGAAACGTTGTCA
AACTGATGAGGCAGGTTGGTTCAGCCTTTTCCCTCTTAGCGTCGGAAGAA
TGTAGCACATGTCACACGTGGTGCGGTAGGCTTCCCTCCGCCGAAATCTG
CTCTCAAATGTTCTTGTTGGTGTTGCATTCGTCGGTGTCTTGCTGAGCAA
CTAAGGAACGCGTGTTCTCACGCTGAGTGGTCCGTCTGGGTTCGGGAGGT
TGCCGCCTTTTTTGCATTCCCCCCAAACTTGATGAGTTGTTATTTGCTTC
GATCATTTCGCTTCTCCACACAAGCTGTGCCGGTGGTCAATGTACGAATT
TGCTTCTTCGAGCATGCTCAGCTTGCCGCACTTGCCCGTCTTTCCGTTTT
GCCCCTCCTACCGGGCGATGGTTTCCTGTCTCATCATTTGTTTTCGGTAA
TATGTCTGCCTGTCAACATTTTTTTCTGTGATGGCATCTGCCTATACCTT
TGTTCAATGTTTGCTGGCGGCTCCGATCACTCGGGTGGTCAAACTGCAGG
ACTCTTGGAAAACAAGCCTAATGCGAACCGTTGTATTTTTCTCTTTCTAT
CGGTGCCGCCCACTTGCTGAACGTCCCCCCGCTCAACTCTGTGGCTGACC
GCACGGGCCCCCTTGCTCATTTACCGCCCGCCGCCCGCCCGCTTTCCCCT
GGCGGGGCACCTAACAATTTCGGCACAAAACAACAGGAGAAGAAGGACGC
GTGGGACTACAACGTCAACACGCCGTTGAAGCCCGTGAAGCCCGTTTACA
GGAAGGAATAAACTTTTCACGGCGCTTTCAACCACCATCCCTGTTTTGTG
CAATGGGCGTAGAGGGTATTTCGAAAGGTGAAGCCGGTTCTGAAAGGCTT
TCATGTGCGCGCGAATAGAGGCGCTCTCACGGTCGAAATTAACGCTCTGT
AGGTACCACTGCTGTTATCGAGGGAGTTTTTTTGTGGGGTACAGCGGCGA
CCGTGGTCAGAGGTCGATGGTGTCGTTGAACAGAGCGTGAGGGCTCGGCA
AGCCGACGCCGTCGTCTCGTCCACGGCAGGCTGGCGGCTTGGGAGAGAAG
GGAAGGGAAAGGGAAACTTGACGTTGTTTTCTGATTGGTCGAAATGCCTC
TAGTCGAAAAAAAAAGTATCATTGGACGCCGCGCGCTCGAGTGTGTGTGT
TGGTCAACCAGGGCTGGCTCGAGAGAAAAGGGAAAGTGGCGCGGGATTTC
CTGACGGGTCGACATGCCTCCGTTTGACGAAAAACCTCCGTTTGCTTCGG
AGAGGGTTGACTACACATGCGAGGCTTCGTCGGTTGGTTTCTCACGAGAG
GCTTACAAGGGAGAATCCAGGGGCGAAGGTTAAAACGAAGAATTCGTCCG
GCTGGTCATTTCTCTTGTACTTATGCGACGTACGCTCAGGGGGGCCTCCT
CGGGTTTGCGGGTGCGAATGGTGCCACCACCCACCCAACCCCGACCCAAC
CCGAGGACCGCATCCGGCCGACTGAGAACATTCTTCAGGGTACGTTACAG
TGCTGAGGGCCAAACAGTGGTCCTCACGAATCTCCGCGTTCAGATGGCGT
TTGCGAAGAATACAAGCTTGTTTGTCAGGAGGGTAGTTCAGCGGTGAATA
AACCACACCGAAATACACCAGGCCGCAACACGGCCGTGTTGCAGAGCACA
GGCTCTCAAAGGGATGGGGAGAGGGGGGTAATCACCGGTGTACCTTTGGG
CATGATGCTCCCCATATGTGCTGCCTTCTTGCAAAACCCTCAGGGCTCCC
CCCTCTCCCCCCCTTGGGCCGACGATCCGGAATGGACAGATCATTGCAGG
ATGCGAGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4039665..4043774-

>mRNA_P-fluviatile_contig1.334.1 ID=mRNA_P-fluviatile_contig1.334.1|Name=mRNA_P-fluviatile_contig1.334.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=846bp|location=Sequence derived from alignment at P-fluviatile_contig1:4039665..4043774- (Porterinema fluviatile SAG_2381)
ATGAGAGAACATGGCCGGGGAAGTCAAAGAGTTCTTGCGAGGCAACGGTC
AACTCGGCCGGCCAAGGAGGGTTGGTCTTACGGAGAGCAGGGCGGGCAGC
ACCTGAAACGGCTGCAAAAGTCACCGTCGCTTTCGAGCTGTTCTACTCTT
GCATCGTTGATGAGAGAACATGGCCGGGGAAGTCAAAGAGTTCTTGCGAG
GCAACGGTCAACTCGGCCGGCCAAGGAGGGTTGGTCTTACGGAGAGCAGG
GCGGGCAGCACCTGAAACGGCTGCAAAAGTCACCGTCGCTTTCGAGCTGT
TCTACTCTTGCATCGTTGATGCAACTGGTGACCGTGGACGACGTCCTGGC
CATGATGGGCGACACGTCCAAACTGGCAGAGAAGGGCGAGCTGGAGAAAC
TTGTCGAGGCTATTGGGCGCGTTTTCTCGACCAACGACGGCACCAACATC
GTCGACGGCCCGGACTACATCCCGTACCCCACGGGCTACTCCGGAGAGGT
CAACAAGATGCAACTGGTGACCGTGGACGACGTCCTGGCCATGATGGGCG
ACACGTCCAAACTGGCAGAGAAGGGCGAGCTGGAGAAACTTGTCGAGGCT
ATTGGGCGCGTTTTCTCGACCAACGACGGCACCAACATCGTCGACGGCCC
GGACTACATCCCGTACCCCACGGGCTACTCCGGAGAGGTCAACAAGGAGA
AGAAGGACGCGTGGGACTACAACGTCAACACGCCGTTGAAGCCCGTGAAG
CCCGTTTACAGGAAGGAATAAGAGAAGAAGGACGCGTGGGACTACAACGT
CAACACGCCGTTGAAGCCCGTGAAGCCCGTTTACAGGAAGGAATAA
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