mRNA_P-fluviatile_contig1.332.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig1.332.1
Unique Name	mRNA_P-fluviatile_contig1.332.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5L2N3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N3_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 8.960e-51
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1

Query:  100 MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            MWGIFALFGVLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:    1 MWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5K7B5_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B5_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.630e-50
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1

Query:  100 MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            MWGIFALFGVLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:    1 MWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5JMR3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR3_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 5.440e-50
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1

Query:  100 MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            MWGIFALFGVLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:    1 MWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 5.790e-49
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 1

Query:   76 AHPSPTPLMWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            A PSPTPLMWGIFALFGVLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAA+TYGLPLASLHDRVK KVAIDA+VGPGTVLSKE EDFVEDVLI
Sbjct:   31 AQPSPTPLMWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAAKTYGLPLASLHDRVKKKVAIDAKVGPGTVLSKEGEDFVEDVLI 124

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5KQE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE4_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.080e-45
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1

Query:  100 MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            MWGIFALFGVLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:    1 MWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5JH77_9PHAE (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH77_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.640e-45
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1

Query:  100 MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            MWGIFA FGVLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:    1 MWGIFAPFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.850e-45
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1

Query:  100 MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            MWGIFALFGVLLLSMGR RVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:    1 MWGIFALFGVLLLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 86

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5LAK0_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAK0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.130e-35
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 1

Query:  148 RTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            R   DPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI
Sbjct:   32 RVNQDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 101

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5JPC4_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.790e-35
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 1

Query:  100 MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            M G+FA+ G+LL SMGRTRVDPEQAQKAVDAVRSG+MS+R AA  YGL   SLH R+ NKVAIDA+V PGTVLSKEEE+FVEDVL+
Sbjct:    1 MRGVFAIVGLLLPSMGRTRVDPEQAQKAVDAVRSGQMSVRGAAEAYGLSRNSLHSRLTNKVAIDAKVAPGTVLSKEEEEFVEDVLV 86

[Close]

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Match: A0A6H5K5E3_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.230e-30
Identity = 69/103 (66.99%), Postives = 74/103 (71.84%), Query Frame = 1

Query:   58 KHSRDTAHPSPTPLM---WGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI 357
            K+S    H     L+   WG  A  G       R RVDPEQAQK VDAVRSG+MSLRVAA+TY LPLASLHDRVK +VAIDA VGPGTVLSKEEE FVEDVLI
Sbjct:   40 KYSTALTHTPDVGLLCPFWGPAAKHGTY---ESRPRVDPEQAQKTVDAVRSGQMSLRVAAKTYRLPLASLHDRVKKEVAIDASVGPGTVLSKEEEGFVEDVLI 139

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig1.332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L2N3_9PHAE	8.960e-51	98.84	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5K7B5_9PHAE	1.630e-50	98.84	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JMR3_9PHAE	5.440e-50	98.84	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JUK8_9PHAE	5.790e-49	93.62	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KQE4_9PHAE	1.080e-45	98.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH77_9PHAE	1.640e-45	97.67	S5A_REDUCTASE domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5L1T0_9PHAE	1.850e-45	98.84	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LAK0_9PHAE	1.130e-35	95.71	HTH psq-type domain-containing protein (Fragment) ...	[more]
A0A6H5JPC4_9PHAE	5.790e-35	75.58	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5K5E3_9PHAE	1.230e-30	66.99	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig1	contig	P-fluviatile_contig1:4034651..4035007 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	1
Model size	358
Cds size	258
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815322.7175765-UTR-P-fluviatile_contig1:4034650..4034749	1622815322.7175765-UTR-P-fluviatile_contig1:4034650..4034749	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 4034651..4034749 +
1693561494.8311093-UTR-P-fluviatile_contig1:4034650..4034749	1693561494.8311093-UTR-P-fluviatile_contig1:4034650..4034749	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 4034651..4034749 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815322.7282305-CDS-P-fluviatile_contig1:4034749..4035007	1622815322.7282305-CDS-P-fluviatile_contig1:4034749..4035007	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 4034750..4035007 +
1693561494.840173-CDS-P-fluviatile_contig1:4034749..4035007	1693561494.840173-CDS-P-fluviatile_contig1:4034749..4035007	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 4034750..4035007 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig1.332.1	prot_P-fluviatile_contig1.332.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig1 4034750..4035007 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig1:4034651..4035007+
coding sequence from alignment at P-fluviatile_contig1:4034651..4035007+

protein sequence of mRNA_P-fluviatile_contig1.332.1

>prot_P-fluviatile_contig1.332.1 ID=prot_P-fluviatile_contig1.332.1|Name=mRNA_P-fluviatile_contig1.332.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=86bp
MWGIFALFGVLLLSMGRTRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPL
ASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLI

mRNA from alignment at P-fluviatile_contig1:4034651..4035007+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig1.332.1 ID=mRNA_P-fluviatile_contig1.332.1|Name=mRNA_P-fluviatile_contig1.332.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=357bp|location=Sequence derived from alignment at P-fluviatile_contig1:4034651..4035007+ (Porterinema fluviatile SAG_2381)
GAAATCTTCAGCTTTCCGTTAGCTTTCGTTTGAGCACCTCCGCGTGTCGA
TCGGGTCAAGCACTCCCGAGATACAGCACATCCCTCACCCACACCCCTTA
TGTGGGGCATCTTTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACGT
ACGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCAG
CGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTAG
CCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGTT
GGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACGT
CTTGATC

Coding sequence (CDS) from alignment at P-fluviatile_contig1:4034651..4035007+

>mRNA_P-fluviatile_contig1.332.1 ID=mRNA_P-fluviatile_contig1.332.1|Name=mRNA_P-fluviatile_contig1.332.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=516bp|location=Sequence derived from alignment at P-fluviatile_contig1:4034651..4035007+ (Porterinema fluviatile SAG_2381)
ATGTGGGGCATCTTTGCCCTTTTCGGGGTCCTGCTGCTAAGCATGGGACG
TACGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGCGGTACGCA
GCGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGTTACCGCTA
GCCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGATGCGAGGGT
TGGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGTAGAAGACG
TCTTGATCATGTGGGGCATCTTTGCCCTTTTCGGGGTCCTGCTGCTAAGC
ATGGGACGTACGAGAGTAGACCCAGAGCAGGCCCAGAAGGCTGTAGATGC
GGTACGCAGCGGTGAGATGTCGCTCCGCGTTGCTGCGAGGACCTACGGGT
TACCGCTAGCCTCGCTGCACGACCGTGTGAAGAACAAGGTGGCCATAGAT
GCGAGGGTTGGTCCCGGGACTGTCCTGAGCAAGGAGGAGGAAGATTTCGT
AGAAGACGTCTTGATC