mRNA_P-fluviatile_contig1.33.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.33.1
Unique NamemRNA_P-fluviatile_contig1.33.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.33.1 vs. uniprot
Match: D7FXB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB3_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 9.320e-68
Identity = 138/259 (53.28%), Postives = 165/259 (63.71%), Query Frame = 1 
Query:    1 MGKASPHKVSVFVDAVSSAIGPAIIEATARPKTVHAVGAGEGTAGAVAADRPPSGGITALDRNNNRRQAGALATENINPHRS--------KQSQQRERDHQQVHGGYSSVGNSVHGKPARNPAMYTGIGGGKDSVMAGSDGGA----DETLVWSGIPFAEARQKMLDPPKVDMAAIAAIQAAFFRSFPFQKHGEKFADPGVRSSLKKLITSEGPARLIGLLSHYLFWIMLLPFALAHKEQDDCLLLQADKRLSPKRQQK 741
            MG+ASPHKVSVFVDAVSSAIGPA++E T      H      G A  + + +  +   TA DRN  RRQ G LA  N    R         ++  QRER HQ  HG  ++ G S  G   RNP      GG    V AGSDGG     DE +    + FA+ R+KMLDPPKVDM+AIA +QAAF R+F F KHGEKF D  VRSSLK +I SEGP RLIGLLSHYL+WIMLLPF LAHK++DDC+LL+ D RLS ++Q+K
Sbjct:  105 MGRASPHKVSVFVDAVSSAIGPAMMETTTGKDGAHRADTAGGAAATMPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSRGLLTNNRNFEKRAQRERGHQ--HGRQANTGASGDGVSKRNPVALQQKGGVGGDV-AGSDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFSFHKHGEKFTDISVRSSLKNIIMSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQKK 360
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BLAST of mRNA_P-fluviatile_contig1.33.1 vs. uniprot
Match: A0A6H5K524_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.540e-58
Identity = 133/257 (51.75%), Postives = 158/257 (61.48%), Query Frame = 1 
Query:    1 MGKASPHKVSVFVDAVSSAIGPAIIEATARPKTVHAVGAGEGTAGAVAADRPPSGGITALDRNNNRRQAGALATENI--------NPHRSKQSQQRERDHQQVHGGYSSVGNSVHGKPARNPAMYTGIGGGKDSVMAGSDGGA----DETLVWSGIPFAEARQKMLDPPKVDMAAIAAIQAAFFRSFPFQKHGEKFADPGVRSSLKKLITSEGPARLIGLLSHYLFWIMLLPFALAHKEQDDCLLLQADKRLSPKRQ 735
            MGKASPHKVSVFVDAVSSAI P ++E T      H      G A  + + +  +   TA DRN  RRQ G LA  N         N     +  QRER HQ+  G  +S G S  G     PA     GG    V+A  DGG     DE +    + FA+ R+KMLDPPKV M+AIA +QAAF R+F F KHGEKF D  VRSSLK +ITSEGP RLIGLLSHYL+WIMLLPF LAHK++DDC+LL+ D RLS ++Q
Sbjct:  188 MGKASPHKVSVFVDAVSSAILPVMMETTTGKDGAHRADTAGGAAATLPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSCVVLTNNRNFDKRTQRERGHQR--GRQASTGASGDGVSKIFPAALRQSGGVGGDVVAVGDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVGMSAIATVQAAFARNFAFHKHGEKFKDISVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKNDYRLSMRKQ 442
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXB3_ECTSI9.320e-6853.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K524_9PHAE2.540e-5851.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:576565..579738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size741
Cds size741
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.33.1prot_P-fluviatile_contig1.33.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 576565..579738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.715154-CDS-P-fluviatile_contig1:576564..5765881622815276.715154-CDS-P-fluviatile_contig1:576564..576588Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 576565..576588 +
1693561371.037275-CDS-P-fluviatile_contig1:576564..5765881693561371.037275-CDS-P-fluviatile_contig1:576564..576588Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 576565..576588 +
1622815276.7248995-CDS-P-fluviatile_contig1:577133..5775831622815276.7248995-CDS-P-fluviatile_contig1:577133..577583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 577134..577583 +
1693561371.0553477-CDS-P-fluviatile_contig1:577133..5775831693561371.0553477-CDS-P-fluviatile_contig1:577133..577583Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 577134..577583 +
1622815276.7356641-CDS-P-fluviatile_contig1:578628..5787741622815276.7356641-CDS-P-fluviatile_contig1:578628..578774Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 578629..578774 +
1693561371.3131545-CDS-P-fluviatile_contig1:578628..5787741693561371.3131545-CDS-P-fluviatile_contig1:578628..578774Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 578629..578774 +
1622815276.746276-CDS-P-fluviatile_contig1:579617..5797381622815276.746276-CDS-P-fluviatile_contig1:579617..579738Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 579618..579738 +
1693561371.4617126-CDS-P-fluviatile_contig1:579617..5797381693561371.4617126-CDS-P-fluviatile_contig1:579617..579738Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 579618..579738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.33.1

>prot_P-fluviatile_contig1.33.1 ID=prot_P-fluviatile_contig1.33.1|Name=mRNA_P-fluviatile_contig1.33.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=247bp
MGKASPHKVSVFVDAVSSAIGPAIIEATARPKTVHAVGAGEGTAGAVAAD
RPPSGGITALDRNNNRRQAGALATENINPHRSKQSQQRERDHQQVHGGYS
SVGNSVHGKPARNPAMYTGIGGGKDSVMAGSDGGADETLVWSGIPFAEAR
QKMLDPPKVDMAAIAAIQAAFFRSFPFQKHGEKFADPGVRSSLKKLITSE
GPARLIGLLSHYLFWIMLLPFALAHKEQDDCLLLQADKRLSPKRQQK
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mRNA from alignment at P-fluviatile_contig1:576565..579738+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.33.1 ID=mRNA_P-fluviatile_contig1.33.1|Name=mRNA_P-fluviatile_contig1.33.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3174bp|location=Sequence derived from alignment at P-fluviatile_contig1:576565..579738+ (Porterinema fluviatile SAG_2381)
ATGGGGAAAGCCAGTCCTCACAAGGTGCGGCACCGCAGCCTGGCTTCGCG
TCCAACCGCGGAAACCACGTCAATCCTTCGTAAATAAATACAGCCTCCGC
AGGCACAAAAACACTTGTTCTCGTTTGTCAAAAGTACAAGAGTAATTTTT
GACTTCCTTTCAAGTTTTGGCAGCACAAGGATGTACAGACTACCCTGCTG
CTAAAATTGCAAGAAAAACCGTCGTTCAGATCGAGTTTTTTCTCGTTGAT
TGAAAATGAAATAGTCTTTTCGTGCCTCCTGTGACTGTAGCACAGGCCTC
TCACGCGAACAAGGCACGAAGCAGGATACACTTGATGGGAGGCAGGTCTC
GACCTTTTTGCACTAATCACCATTTGAAAACATCTGGGAATATCGTTTTA
TTCTCGTGAAACTTCAAAGGGCAATAATGGACTAGTTTTGACTGTGCTGC
TCAACGCTTGGCCTCCCCGCAACAACAGCGACAGCAGTACAAGATACTCA
CGAGCATCATTTCAATCTCACCGGACAGCATCGTCGCCGCCGCCGCGGCC
ATACGTGCTCTGCGCACAGGTCAGCGTTTTCGTCGACGCCGTGTCCTCTG
CCATAGGCCCGGCCATAATTGAAGCAACAGCGCGCCCGAAAACTGTCCAT
GCTGTCGGTGCTGGGGAGGGGACAGCTGGGGCGGTGGCGGCGGACCGCCC
GCCATCAGGCGGAATCACTGCTCTGGATAGGAACAACAACCGGCGGCAGG
CTGGCGCACTAGCCACGGAAAATATCAATCCCCACCGCAGCAAGCAATCG
CAGCAGCGGGAACGGGATCATCAGCAGGTGCACGGTGGATATTCCTCCGT
CGGGAACTCCGTGCATGGGAAACCAGCAAGGAACCCGGCGATGTACACCG
GAATCGGGGGAGGAAAGGATAGCGTGATGGCTGGGAGCGACGGCGGCGCC
GACGAAACGTTGGTTTGGAGCGGGATTCCCTTTGCTGAAGCCAGGCAGAA
GATGCTTGATCCCCCCAAGGTGAACCCATCCCGTTCGGGAGCTGTGCCCC
GCATCCCTCGAAGGTTACACAACGACGCCATTTTCGGTAATGCGACCGTC
CTGGACTCGGACGAGAATCGTACCCTTGATCCTGCCGCTTGTCCTTAGTA
GAAGTGGTGGTACCGAAGCACGAACGCTTTCTTTTGCATAACATGACGGA
TTGTTTGTGCGCGGGGTACTACACCAGCTTGTCTCTTCAACTAAATCATA
TGCCGTCAGCGCACTGGAAAAACCACCTACTACTCAGAAAATTACCCTAC
TCATTATCCGTAGGACGTTTTCTAGTAAAAATGTCAGCTGTTTCTGCCGA
TAGGCACCACCGATCCCGTGTAGGTGTTTGGAGGTGAGCGTTCTCCCATG
CCGATTGATACGACCCAAGCAAGTGTCACGAGGTCTCGCCTCCGAAGGTG
GCGATACGTTGAGACCAGCGCGTTCGGCAAGTGGCGCTTTTTGCGCCCGG
AGAGGCTGGGCGTCAAGTTCGTTCTCAGGCCCATGCCCATTCTGCTTCTT
TTTTCTTTCCGTCCTGCTTTTTTCGGACCTGCTTCCAGGTTTCTTAGATT
TAGCCCCCATTATGCTCATGCTGCTCCGGAAGTAGACTTATTCGCAAATA
CGCTGGTAAACAATTCTTGGAAATGTGGCCGATTGTGCTAGCAATGATAA
CAGAACGGGGATAGGCGCAACCATCCTAGCTGAAACAACGCTGAGGCTCG
AGAAGGAGATTGTGAAGGGAGAAACACTACGCCCAAATTTGTGAACTATG
ATATCCTGCGTCCAATCGTGTTCCTTTCACACCGCCCATCGGCGTATTTG
GCTAGCTTGAATCCTCCAAGGATTTCTTTTCAGTTGTTTGGTGCGTTGAC
TGCGCTTTTACTGATCCATTTCTAGGGGCACGTAGGCGGAGATTTCAATC
ATCCTCGTCGCTCTGCAGTTCAACAAAAATATTTGCGCACACGAGCTCGG
AAAACGATGCTGCCCTTACCATACCCGCGCATCTTTCGTTTGACCTTATC
CAACCCTTCTGTAGGTGGATATGGCAGCTATCGCCGCGATCCAGGCGGCC
TTTTTTCGGAGCTTTCCATTCCAAAAGCACGGCGAAAAGTTTGCCGACCC
AGGCGTGCGATCGTCGCTCAAGAAGCTAATCACATCCGAGGGTCCAGCGA
GGCTGATAGGGTAAGTCGACTTCCGAGCATACATTCACGTCGGGGCGAAA
GCAACGGCGAACTCTGAAATTTATCGAAGAACATGCTTGTTGATACTTTT
GCACACGACAAATGTGTTTTGCTATTTGGTTTACATTTCGCGCATGAGTC
GAACAAGCCTTAGCTACGTACTGGTGGTCTCGAACAACCTTCTTGCGCAT
CCATACCTTTCCCTGGATACATTTGATCGTGACGAAGTTCGTTCCGTTTT
GGGAGAAGACAGACCGGCTTCTTCTTTGTTTGGTGTCTTGTTTCTAATTT
GATTTTCGTCAAATCCATCCTCTGCGGGACTTTGTCATTGTTTAAGCCGC
GCTCAAAAATCACGCTGTGGACCATTGGGTTATCTCTGTAGGGTTTGAAG
CCAGAATAATCATCCCACTTCTTGTGTCCTTTATCGTGGACCTTTATAGG
AATTTTCCTCTCGGTCTTTGCATCCTCCGTTTAAGAATACCGATGAGAGC
TGTGGAACCTCGGGACACTTGAGCTGCTTTGCAAACAGCGCCGAAATATT
CGGTTCACTCAACCCTCCCAAAACGTTCGTGGATACTGCTTCTCCTCACT
TAAACAGCCGCAGTTCTAGCTCGTTGTGCATTTCATCCGGCCTTTTGAAC
CGAAGAGACTGCTACCTTTTTACAGCATGCCCGGGAATGTTAGTTTTTTA
TCTCGGCGATATTGCGTAATGTATCGCCTCTAAACCCCAGGATCCATCGC
CTCAAGGCACGTGTTTCGCTTTCTTCAGAGAAACACCACCTGCGTAACTC
GCCTACCTCTTTCTCTCTGCCCTCGCTTTCGATTCCCCTCACGAACCACG
AAGGTTGCTGTCCCACTATCTATTCTGGATCATGCTGCTGCCCTTTGCGC
TAGCACACAAGGAACAGGACGACTGCTTGCTGCTTCAGGCAGACAAACGC
TTGTCACCCAAGAGGCAACAAAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:576565..579738+

>mRNA_P-fluviatile_contig1.33.1 ID=mRNA_P-fluviatile_contig1.33.1|Name=mRNA_P-fluviatile_contig1.33.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1482bp|location=Sequence derived from alignment at P-fluviatile_contig1:576565..579738+ (Porterinema fluviatile SAG_2381)
ATGGGGAAAGCCAGTCCTCACAAGATGGGGAAAGCCAGTCCTCACAAGGT
CAGCGTTTTCGTCGACGCCGTGTCCTCTGCCATAGGCCCGGCCATAATTG
AAGCAACAGCGCGCCCGAAAACTGTCCATGCTGTCGGTGCTGGGGAGGGG
ACAGCTGGGGCGGTGGCGGCGGACCGCCCGCCATCAGGCGGAATCACTGC
TCTGGATAGGAACAACAACCGGCGGCAGGCTGGCGCACTAGCCACGGAAA
ATATCAATCCCCACCGCAGCAAGCAATCGCAGCAGCGGGAACGGGATCAT
CAGCAGGTGCACGGTGGATATTCCTCCGTCGGGAACTCCGTGCATGGGAA
ACCAGCAAGGAACCCGGCGATGTACACCGGAATCGGGGGAGGAAAGGATA
GCGTGATGGCTGGGAGCGACGGCGGCGCCGACGAAACGTTGGTTTGGAGC
GGGATTCCCTTTGCTGAAGCCAGGCAGAAGATGCTTGATCCCCCCAAGGT
CAGCGTTTTCGTCGACGCCGTGTCCTCTGCCATAGGCCCGGCCATAATTG
AAGCAACAGCGCGCCCGAAAACTGTCCATGCTGTCGGTGCTGGGGAGGGG
ACAGCTGGGGCGGTGGCGGCGGACCGCCCGCCATCAGGCGGAATCACTGC
TCTGGATAGGAACAACAACCGGCGGCAGGCTGGCGCACTAGCCACGGAAA
ATATCAATCCCCACCGCAGCAAGCAATCGCAGCAGCGGGAACGGGATCAT
CAGCAGGTGCACGGTGGATATTCCTCCGTCGGGAACTCCGTGCATGGGAA
ACCAGCAAGGAACCCGGCGATGTACACCGGAATCGGGGGAGGAAAGGATA
GCGTGATGGCTGGGAGCGACGGCGGCGCCGACGAAACGTTGGTTTGGAGC
GGGATTCCCTTTGCTGAAGCCAGGCAGAAGATGCTTGATCCCCCCAAGGT
GGATATGGCAGCTATCGCCGCGATCCAGGCGGCCTTTTTTCGGAGCTTTC
CATTCCAAAAGCACGGCGAAAAGTTTGCCGACCCAGGCGTGCGATCGTCG
CTCAAGAAGCTAATCACATCCGAGGGTCCAGCGAGGCTGATAGGGTGGAT
ATGGCAGCTATCGCCGCGATCCAGGCGGCCTTTTTTCGGAGCTTTCCATT
CCAAAAGCACGGCGAAAAGTTTGCCGACCCAGGCGTGCGATCGTCGCTCA
AGAAGCTAATCACATCCGAGGGTCCAGCGAGGCTGATAGGGTTGCTGTCC
CACTATCTATTCTGGATCATGCTGCTGCCCTTTGCGCTAGCACACAAGGA
ACAGGACGACTGCTTGCTGCTTCAGGCAGACAAACGCTTGTCACCCAAGA
GGCAACAAAAGGTTGCTGTCCCACTATCTATTCTGGATCATGCTGCTGCC
CTTTGCGCTAGCACACAAGGAACAGGACGACTGCTTGCTGCTTCAGGCAG
ACAAACGCTTGTCACCCAAGAGGCAACAAAAG
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