mRNA_P-fluviatile_contig1.316.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.316.1
Unique NamemRNA_P-fluviatile_contig1.316.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.316.1 vs. uniprot
Match: D8LLN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN8_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 8.070e-66
Identity = 125/207 (60.39%), Postives = 148/207 (71.50%), Query Frame = 3 
Query:  240 KREMATRTETRTAVLGGETASLLDDPRKAAPSGDPFSRAFETGGGG-EGYSVIQERTGGGPEGPPDIPLNGFQSYHTQPSSSTSSLHSRASPTPERHRGAKSKGRAKT-----------RFPSLTPSVTPAPGNFSATGNTRAAEAVAHARKTWAPPALRTQAIASYGSVPDLEIVPENIEINRFQKHQQPRRYRPSDLGCPAACVI 824
            +RE         AVLGGETASLLD P + A   +P+SRAFETGGGG  GY+VI++R GGGPEGPP++PL+ FQSYH QP +S    H  AS  PERH+G  S                 RFPSLTP++ PAPG FSA G+TRAAEAVA ARKTWAPP LRT+AIASYG+VPDLEI+PENIE++RFQK Q+  R+  SDLGCP+ CVI
Sbjct:    5 RREGGVAGAAEMAVLGGETASLLDGPGELADR-NPYSRAFETGGGGGRGYTVIEDRNGGGPEGPPELPLSNFQSYHAQPPASIPDRH--ASLPPERHQGTNSXXXXXXXXXXXXXXXXXRFPSLTPALAPAPGTFSANGDTRAAEAVAQARKTWAPPVLRTKAIASYGAVPDLEIIPENIEVSRFQKRQRAGRH--SDLGCPS-CVI 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLN8_ECTSI8.070e-6660.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3856923..3859275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_005050.1
Exons4
Model size1234
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.316.1prot_P-fluviatile_contig1.316.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3857327..3858744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.9437306-UTR-P-fluviatile_contig1:3856922..38573261622815319.9437306-UTR-P-fluviatile_contig1:3856922..3857326Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3856923..3857326 -
1693561489.7945616-UTR-P-fluviatile_contig1:3856922..38573261693561489.7945616-UTR-P-fluviatile_contig1:3856922..3857326Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3856923..3857326 -
1622815319.9866438-UTR-P-fluviatile_contig1:3858744..38589131622815319.9866438-UTR-P-fluviatile_contig1:3858744..3858913Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3858745..3858913 -
1693561489.8394408-UTR-P-fluviatile_contig1:3858744..38589131693561489.8394408-UTR-P-fluviatile_contig1:3858744..3858913Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3858745..3858913 -
1622815319.9954176-UTR-P-fluviatile_contig1:3859196..38592751622815319.9954176-UTR-P-fluviatile_contig1:3859196..3859275Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3859197..3859275 -
1693561489.8502295-UTR-P-fluviatile_contig1:3859196..38592751693561489.8502295-UTR-P-fluviatile_contig1:3859196..3859275Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3859197..3859275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.9542809-CDS-P-fluviatile_contig1:3857326..38574311622815319.9542809-CDS-P-fluviatile_contig1:3857326..3857431Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3857327..3857431 -
1693561489.8027072-CDS-P-fluviatile_contig1:3857326..38574311693561489.8027072-CDS-P-fluviatile_contig1:3857326..3857431Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3857327..3857431 -
1622815319.9639711-CDS-P-fluviatile_contig1:3857711..38580131622815319.9639711-CDS-P-fluviatile_contig1:3857711..3858013Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3857712..3858013 -
1693561489.810699-CDS-P-fluviatile_contig1:3857711..38580131693561489.810699-CDS-P-fluviatile_contig1:3857711..3858013Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3857712..3858013 -
1622815319.9746823-CDS-P-fluviatile_contig1:3858569..38587441622815319.9746823-CDS-P-fluviatile_contig1:3858569..3858744Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3858570..3858744 -
1693561489.8206823-CDS-P-fluviatile_contig1:3858569..38587441693561489.8206823-CDS-P-fluviatile_contig1:3858569..3858744Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3858570..3858744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.316.1

>prot_P-fluviatile_contig1.316.1 ID=prot_P-fluviatile_contig1.316.1|Name=mRNA_P-fluviatile_contig1.316.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=194bp
MATRTETRTAVLGGETASLLDDPRKAAPSGDPFSRAFETGGGGEGYSVIQ
ERTGGGPEGPPDIPLNGFQSYHTQPSSSTSSLHSRASPTPERHRGAKSKG
RAKTRFPSLTPSVTPAPGNFSATGNTRAAEAVAHARKTWAPPALRTQAIA
SYGSVPDLEIVPENIEINRFQKHQQPRRYRPSDLGCPAACVIC*
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mRNA from alignment at P-fluviatile_contig1:3856923..3859275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.316.1 ID=mRNA_P-fluviatile_contig1.316.1|Name=mRNA_P-fluviatile_contig1.316.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2353bp|location=Sequence derived from alignment at P-fluviatile_contig1:3856923..3859275- (Porterinema fluviatile SAG_2381)
ACTCGCTCCCTTGCTCCCTCTTACTGACAGCCCACGCAGTACGCCTGCAG
TCGGAAAGGGCAGCTACCAATCAACACAGGTAAGCGAAGTACCGACTGTA
CCATCTTTCTTTCAGCAAAACTCGAAGCCTTTCAGGCCGCTGCGGCGTGT
GTTTGTCAATTGAGTGCACCTTAGTAGAAGGCAAGCTTTCGCACTGCGGG
CGCTGCCGTAGAAAGGGCATGAACCTTGACCTTTCAACGCAAATAATGTC
AGTATTCCGTTCCATGAGCAACTTATCGCAACACACCTTGCCTACTTCAG
TCTAAGGCGGACTCTCCCTGCTCTCTCTTCATCCTATTTTCCCGCACTAC
CTTCCCTTCCAGACATCGAACTTTCAGGAGCTCCGACGACAAAGCGCCCA
AGCACCACAGCAGCAGCAGCAGCAGCAGGCAAACCTCTGATGGGCGTGTC
TTGACACCCTCTTAATAATACGCGATATTTGGTTGGGTTTGGGTGCGCGC
TTGGTGAGCCGAAAGCTTGCGAAAAAGAGAGATGGCGACTCGGACCGAAA
CAAGAACAGCAGTCCTTGGTGGGGAGACGGCAAGCTTGCTCGACGATCCG
AGGAAAGCAGCTCCTAGTGGAGACCCTTTTTCACGGGCCTTCGAAACCGG
GGGCGGGGGCGAGGGGTATTCGGTCATTCAGGAGCGCACTGGTGGGGGTC
CCGAAGGTGACAGCGGACGTGCTCATCAGAGAGGATGTACTTTAGACCCG
AAGTGCTCTCGGGTTTATGAAACGCAGTTGCCTCGATCGGAATTTTTTTC
GGCGGGACTGTCAGAATATGCAGGAGGTCAACACGAAGAATCATGTTACT
GTTGGATGTTGGCAGGTTTGTGGTGTCTCTAGCTTCTGTGGCATGACTAC
CGTGGCGGTTGCTTGATGGCTTTCTGCTGAGGAGAAAAGAATTCTTGCCT
GCGGTTGCTCTTCGCAACCGTAATCCGCATTATGTGGAGGTTGGCAGCGT
TGCCGTGCGCATATTTCACCTGGGTTTTTCAGCGACGGACGGTGCTTCGC
TGCAGAGGAGCTGAGCAGTTGATAGATACCTGGTCCTGGACATCTGTGTC
GACGGTTATGATATAAATCTCTCTACAGGACCGACGTTTCAGGCAAGCTC
TTGTACCTTGTCCGCTTTCAATTTTTATTCTCGACAACAGAGGTCCGTGT
AAAACGTGACCCATTTTGGGACCCTCCCTCCCCTTCCCGCCCCTCCGCAT
CCCATGAGTCAGGCCCCCCGGACATTCCGCTGAACGGATTTCAGTCGTAT
CACACGCAGCCATCTTCGTCGACATCGTCGTTGCATTCTCGCGCGTCGCC
TACCCCGGAGCGACATCGCGGCGCGAAGAGTAAGGGCCGAGCCAAGACTC
GATTTCCGTCTCTGACGCCGTCCGTGACCCCGGCGCCCGGCAATTTCTCT
GCGACCGGGAACACGCGAGCGGCGGAGGCGGTGGCGCATGCGCGCAAGAC
ATGGGCCCCACCGGCGCTTCGAACACAAGCGATCGCGTCCTACGGATCTG
TCCCCGATTTAGAGGTATGTATGATGCGAGAGGGCACTGTAGGCCTTATG
GAGATCCGCGATTTGTATTTCTACGGGCGTGTTGTCCCGGGAATGCGCTG
TGACCTGAATGCGGCATTTCTTGCGGACCAGTTATATTTCATCAACTTGT
TCGCGAGAAGGATTTCGTCAGGGCTTTTCGTGCACGGTATCGTGTATGAG
TGAAGTGGACCGCAGGAACGCACTTTGCAGGCGACCGACTTCGCTGACGG
CCTCGACTCCTCGTCCTTTCCTCTACCTTCCTCGCGCACGCCAGATTGTC
CCCGAAAATATCGAAATCAATCGGTTCCAGAAGCACCAGCAGCCTAGGAG
ATATAGGCCATCCGACCTAGGCTGCCCGGCGGCATGCGTGATATGCTGAC
CACCTGCAGCGGCCGAATGACCTACCGGCCGATCTCGGCGAGCGCTCTCT
AGCCGTTGTTGCCACGGTGCCCCCGCAGCTCGTGTTGGTGGCGATTCGCT
GCGATAGTATATGTGGTGATGATGGCTGGGGCGGTGGTGGTTGCGACGGT
GGTGGCAGGGTGGTGGCAGTCTTGGTGGTTCTACCCAACACATATCACAA
CATCAGTGAATGTGTTCTCTTACGGTTGGATGGAGGAGCCGATTGACCGC
ACCCGCGGCCGTCGAGCGGCCTAGTGGTGTCGATGACTTTTTATGTACAG
TCACAGGACGAAACAAGGACTCGCGTGCCTCGGCTGCGCCGGGAAGCCAT
TCACCGCATGTCGATACAGCACAACATCCAGAGCCAACGGACGTGATGGT
AGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3856923..3859275-

>mRNA_P-fluviatile_contig1.316.1 ID=mRNA_P-fluviatile_contig1.316.1|Name=mRNA_P-fluviatile_contig1.316.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1164bp|location=Sequence derived from alignment at P-fluviatile_contig1:3856923..3859275- (Porterinema fluviatile SAG_2381)
ATGGCGACTCGGACCGAAACAAGAACAGCAGTCCTTGGTGGGGAGACGGC
AAGCTTGCTCGACGATCCGAGGAAAGCAGCTCCTAGTGGAGACCCTTTTT
CACGGGCCTTCGAAACCGGGGGCGGGGGCGAGGGGTATTCGGTCATTCAG
GAGCGCACTGGTGGGGGTCCCGAAGATGGCGACTCGGACCGAAACAAGAA
CAGCAGTCCTTGGTGGGGAGACGGCAAGCTTGCTCGACGATCCGAGGAAA
GCAGCTCCTAGTGGAGACCCTTTTTCACGGGCCTTCGAAACCGGGGGCGG
GGGCGAGGGGTATTCGGTCATTCAGGAGCGCACTGGTGGGGGTCCCGAAG
GCCCCCCGGACATTCCGCTGAACGGATTTCAGTCGTATCACACGCAGCCA
TCTTCGTCGACATCGTCGTTGCATTCTCGCGCGTCGCCTACCCCGGAGCG
ACATCGCGGCGCGAAGAGTAAGGGCCGAGCCAAGACTCGATTTCCGTCTC
TGACGCCGTCCGTGACCCCGGCGCCCGGCAATTTCTCTGCGACCGGGAAC
ACGCGAGCGGCGGAGGCGGTGGCGCATGCGCGCAAGACATGGGCCCCACC
GGCGCTTCGAACACAAGCGATCGCGTCCTACGGATCTGTCCCCGATTTAG
AGGCCCCCCGGACATTCCGCTGAACGGATTTCAGTCGTATCACACGCAGC
CATCTTCGTCGACATCGTCGTTGCATTCTCGCGCGTCGCCTACCCCGGAG
CGACATCGCGGCGCGAAGAGTAAGGGCCGAGCCAAGACTCGATTTCCGTC
TCTGACGCCGTCCGTGACCCCGGCGCCCGGCAATTTCTCTGCGACCGGGA
ACACGCGAGCGGCGGAGGCGGTGGCGCATGCGCGCAAGACATGGGCCCCA
CCGGCGCTTCGAACACAAGCGATCGCGTCCTACGGATCTGTCCCCGATTT
AGAGATTGTCCCCGAAAATATCGAAATCAATCGGTTCCAGAAGCACCAGC
AGCCTAGGAGATATAGGCCATCCGACCTAGGCTGCCCGGCGGCATGCGTG
ATATGCTGAATTGTCCCCGAAAATATCGAAATCAATCGGTTCCAGAAGCA
CCAGCAGCCTAGGAGATATAGGCCATCCGACCTAGGCTGCCCGGCGGCAT
GCGTGATATGCTGA
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