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Homology
BLAST of mRNA_P-fluviatile_contig1.307.1 vs. uniprot
Match: A0A6H5KRH1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRH1_9PHAE) HSP 1 Score: 373 bits (958), Expect = 5.600e-120 Identity = 214/400 (53.50%), Postives = 257/400 (64.25%), Query Frame = 2
Query: 317 AGDGAPLHSSGRSEGLLAALSTMIDENLSLFRAGTATMVVGSALTISLLVYRRGLHGFVSAAQVPASYFNRRKRVRVRIAKVVEAAAVVPHHTDEPKGGFERCDDVDRGNADAALRGGGDKGRLDRGSDLLLHTEHVTVLRRVLRLPPRSLGTSGGGGTEAATFTLRLCGVAAEEQGVLLAHEELVKPLAGHYCDAELLFREQRSGAYPSPSSGVGDGTEASSKAFWPVAVCHVHRRRGVLWRDIFQSRLDPKAGFGEHLISEGLARLREEQWWTSGYGGDIESRVPEREANEVGGQPRLTFKCE------------DGGGDPRPPFPALERLLDDRDRFVAAERGAKGAMKGVWGLT-RHDNNSGKAGTATGRDRGVMDGLKSRSVGVVRATMAFFSRW 1477
A GAP +E +LA +S I++NL LFRAGTATM+VGSAL IS LVYRRG+HGF SAAQVPASYF RRKR+RVRIAK+ EA A P PK G R D G A R +GSD+LLH EH+T+ RR+LRLPPRSL S GG ++AATFTLRLCGV+AE +GVLLA ELVKPL G YCDAELLFREQRS A PS ++GVG G A+ + PVAVCH+HRRRGVLWRD+ QSR+DPKAGFGE+LIS+GLARLREEQWW + D P +P + +GG D PFPAL+RLL+DR+ VAAE AK A +G+W L R G+ A GR + +++G+ G+ R F RW
Sbjct: 27 AAGGAPAQPPRITERVLATISIKINDNLRLFRAGTATMMVGSALAISFLVYRRGVHGFRSAAQVPASYFERRKRLRVRIAKISEAPAAPPTFDGPPKDGRGRFDTA--GVAIPTTR--------PKGSDVLLHAEHITLPRRLLRLPPRSLLPSAGG-SDAATFTLRLCGVSAESEGVLLARNELVKPLVGFYCDAELLFREQRSAASPSATAGVGFGVGATEQVSGPVAVCHIHRRRGVLWRDMLQSRIDPKAGFGEYLISQGLARLREEQWWAA---ADRNGLTPAPAVVTAAARPTSAVSAQTHRHRTGAASTGEGGDDSEQPFPALKRLLEDREILVAAEGDAKRASRGLWDLPQRGGEGGGRDSAAAGRAKSLIEGV----AGIARVLTGLFGRW 408
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-04_005150.1 |
| Exons | 5 |
| Model size | 2063 |
| Cds size | 1281 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815318.9068267-UTR-P-fluviatile_contig1:3801486..3801691 | 1622815318.9068267-UTR-P-fluviatile_contig1:3801486..3801691 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 3801487..3801691 + |
| 1693561489.1296854-UTR-P-fluviatile_contig1:3801486..3801691 | 1693561489.1296854-UTR-P-fluviatile_contig1:3801486..3801691 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 3801487..3801691 + |
| 1622815318.9766443-UTR-P-fluviatile_contig1:3804819..3805396 | 1622815318.9766443-UTR-P-fluviatile_contig1:3804819..3805396 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 3804820..3805396 + |
| 1693561489.1798863-UTR-P-fluviatile_contig1:3804819..3805396 | 1693561489.1798863-UTR-P-fluviatile_contig1:3804819..3805396 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 3804820..3805396 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815318.9250162-CDS-P-fluviatile_contig1:3801691..3801897 | 1622815318.9250162-CDS-P-fluviatile_contig1:3801691..3801897 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3801692..3801897 + |
| 1693561489.1373775-CDS-P-fluviatile_contig1:3801691..3801897 | 1693561489.1373775-CDS-P-fluviatile_contig1:3801691..3801897 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3801692..3801897 + |
| 1622815318.936834-CDS-P-fluviatile_contig1:3802572..3802645 | 1622815318.936834-CDS-P-fluviatile_contig1:3802572..3802645 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3802573..3802645 + |
| 1693561489.144874-CDS-P-fluviatile_contig1:3802572..3802645 | 1693561489.144874-CDS-P-fluviatile_contig1:3802572..3802645 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3802573..3802645 + |
| 1622815318.9464-CDS-P-fluviatile_contig1:3802838..3803058 | 1622815318.9464-CDS-P-fluviatile_contig1:3802838..3803058 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3802839..3803058 + |
| 1693561489.152284-CDS-P-fluviatile_contig1:3802838..3803058 | 1693561489.152284-CDS-P-fluviatile_contig1:3802838..3803058 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3802839..3803058 + |
| 1622815318.9582677-CDS-P-fluviatile_contig1:3803374..3803658 | 1622815318.9582677-CDS-P-fluviatile_contig1:3803374..3803658 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3803375..3803658 + |
| 1693561489.159676-CDS-P-fluviatile_contig1:3803374..3803658 | 1693561489.159676-CDS-P-fluviatile_contig1:3803374..3803658 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3803375..3803658 + |
| 1622815318.9679277-CDS-P-fluviatile_contig1:3804321..3804819 | 1622815318.9679277-CDS-P-fluviatile_contig1:3804321..3804819 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3804322..3804819 + |
| 1693561489.1696725-CDS-P-fluviatile_contig1:3804321..3804819 | 1693561489.1696725-CDS-P-fluviatile_contig1:3804321..3804819 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 3804322..3804819 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.307.1 >prot_P-fluviatile_contig1.307.1 ID=prot_P-fluviatile_contig1.307.1|Name=mRNA_P-fluviatile_contig1.307.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=427bp
MGGATRNNDHDDRQRFESSSREAVASMLNMDEGKRSAAGDGAPLHSSGRS EGLLAALSTMIDENLSLFRAGTATMVVGSALTISLLVYRRGLHGFVSAAQ VPASYFNRRKRVRVRIAKVVEAAAVVPHHTDEPKGGFERCDDVDRGNADA ALRGGGDKGRLDRGSDLLLHTEHVTVLRRVLRLPPRSLGTSGGGGTEAAT FTLRLCGVAAEEQGVLLAHEELVKPLAGHYCDAELLFREQRSGAYPSPSS GVGDGTEASSKAFWPVAVCHVHRRRGVLWRDIFQSRLDPKAGFGEHLISE GLARLREEQWWTSGYGGDIESRVPEREANEVGGQPRLTFKCEDGGGDPRP PFPALERLLDDRDRFVAAERGAKGAMKGVWGLTRHDNNSGKAGTATGRDR GVMDGLKSRSVGVVRATMAFFSRWPK* back to topmRNA from alignment at P-fluviatile_contig1:3801487..3805396+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig1.307.1 ID=mRNA_P-fluviatile_contig1.307.1|Name=mRNA_P-fluviatile_contig1.307.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3910bp|location=Sequence derived from alignment at P-fluviatile_contig1:3801487..3805396+ (Porterinema fluviatile SAG_2381) GAGCAAGTCTGTACTGTTCATTAGGCAGTGGTGAGTCGCACACAATGACT
GAGACACAGAGTTATTATTTGATCACGACGGCGTGCACGTAAAATAGACA
CCCTGCACAACATGCAAAATACGGTTTTATGGACAACGCTGTTAATATAA
GCCTCGGAGAATCAGTTAACGCGTAGGACGGGCCTGCTAACAGCCATCCC
TCGCAATGGGGGGTGCAACCCGTAACAACGATCACGATGACCGTCAGAGA
TTTGAGAGCTCTAGCCGTGAAGCAGTAGCATCGATGCTCAACATGGATGA
AGGAAAACGATCAGCAGCAGGCGACGGCGCGCCTCTTCATTCCTCCGGAC
GAAGCGAGGGGCTACTTGCTGCTCTATCCACCATGATCGACGAGAACCTC
TCTTTGTTCAGGTGAGCAATATGGCCTGACAATTTTTGTTGTTCTTGAGC
CCGGGGGGCTTAAATACTCTCTGGATTCCTCGATCAGACAATACAAACCC
GAAAAATTGTTCCTGCTCCGCGTGCCTTCTGTAGCTGAAATCAAACCGTT
CGACTATTAACAGTCAGCGTTTTCAGCTTCTAGACTACACTTCTGTGCAA
TCTTGGTGCTACTGAACGTATGTTGTTTCCACCCAACTTGCAATCTAGGT
GCTGAAGTTGATGCTATTTCTCCACCGAGCGCCCGCAACGATGACCGAAA
ATGCATGCCGCTCATGTTGGCGTGACAATTGCACACTCGTGTACCTCGGG
GTACACATGCTAGAGAATCGGTCAAGGTCTGCATGCCTGGCGTGGCACAG
CCGTGTATCGGCAGCCCGACAGGAGATACACTCACTATAGTTTGTCCAAA
TTATCGTCGAAAAACGTGAGCACCTAATAAACATTGCCACTATCCTGTGC
ACGAGTCCGAAGGCGAGTTCCCGGTAGTACTCGATCGTCAACTTGTCCGC
TTCGCCCGATGGCACCGTTATCGAGTTACCAACGCATCCCGATAATTGTT
TTGGCTACTTCACCGTCTGATAGCTGGCCTCGCCCTCCACTTCTGGCGGT
GCCTGTGCTTCCCGTTTTATGCCTGCGATGACGTAGGGCTGGAACTGCGA
CCATGGTTGTGGGATCGGCTCTAACCATTTCTCTCCTCGTGTACCGTCGG
GGTTTGCATGTAAGTGCTCAATTTCGACATATTTTGACGGCATGCAATTA
CGGAGGTTACCCAGATACGTGTAGGCTATGAAATTGCTGACTATGCGGCC
GAAGTGTCAAACTGCGAGAGGATTTTGAAAAGCAACCGGTACCCTTCGGA
CACTCACTCAATCAAACTACGCTCGCTCCTCCCGCGCTCCCTCCGCTTCA
AGGGTTTCGTGTCTGCCGCTCAGGTACCGGCGTCGTACTTCAATCGCCGG
AAAAGGGTGCGGGTCCGAATTGCGAAAGTGGTGGAGGCGGCGGCGGTGGT
TCCACACCACACTGATGAACCCAAAGGCGGCTTTGAGCGTTGTGATGACG
TGGACAGAGGGAATGCAGATGCTGCCCTCCGTGGTGGCGGCGACAAAGGA
CGGCTTGATCGGGGTTCAGACTGTGAGTAGGGCAAATATCTTTATTTTTC
ATACGTAGCTCAGCACCAACTGGTTTTATTCTGCATTGGAATTGTCACCG
AACAAAAACATGGCCAACTGTCTTGTACCCGCGGTTCTTTTGTAACACGG
GACGCGCGCTTACGTTCACACGCCTGGGTGAACTGCTCTCTTGCACCGTC
GCCTCAACAGCACGATAGTGTAAGATTCCACGGGCCTGCCACTTTTGGGG
CCATGTGGCGGAGCCTTTTACACCGAGGTATTCGCTGACAACCGACGTCC
CTCCCATCCTTCGACACTCCCGCGGTTCCCGTTTCCAGTGCTGCTGCACA
CCGAGCATGTCACCGTCCTTCGGCGGGTCCTCCGCTTGCCACCGAGGTCC
CTCGGTACGAGCGGCGGCGGCGGCACCGAGGCGGCTACGTTCACCCTGAG
GCTCTGCGGGGTCGCAGCAGAAGAGCAGGGCGTTTTGCTGGCCCATGAAG
AGCTGGTAAAGCCCTTGGCCGGACACTACTGCGACGCCGAGTTGCTCTTC
CGGGAGCAACGATCCGGGGCTTACCCGAGCCCGAGCTCCGGGGTAGGCGA
TGGCACGGAAGCAAGCAGCAAGGTGACTTGTGAAGTTTGGCAGGCGTGCA
GGGAAGCTTTCGCGACTACCCCCAGAGCTGCCCAGAGTTTGCGTCAACGT
TTGGAAGATTCAAACACCGAATCTTTGAGAACGAATACACCAAAACTAGC
GTTCGTGGGCGGGAAGGCATGCAACAAGGTGTAATAAGTCCCGACGCCAG
CTCCCCGCTGGTGTCGTTGCCATTGAGCTTCATTGAAGTGAGCGTTCTTG
ATATTGGGACCGATATCCACATACTTTTGGTAACCATTGGCACTTGGTCT
ATCGCAGCTCCAACGCAGTGGTGCACGACACCATCGGAGAAGCAAGGCGT
ACAGTTCCACTCTTGTTATGAAATTTCTCAGAGGCATATTTTTTTCCACG
CATATTTGCACATGCTGTGCCGCAAAGCCGCGGGTTGGTAGAATCATCGT
ATTGAACCCGCTTGACTTGATGCGATTCGTCTTGATAATTGCCCCCCTGA
AGGTCCTGTATAGCACTCTCTCGCACAACGGCCGCGGGGAATGGAAAGCG
AAACGAAATATTTGATATTTGACCCTAGGCCACTCTTACCCCAAATGCAC
TCTCCAGCGACAAACGACATCGACCGAATGCCCCCACACGCCTACGCCTC
AAGAAATGTCCTCGACCGTTTCGTTTGCACGGCAGGCATTCTGGCCGGTC
GCCGTCTGCCATGTCCACCGCCGTCGGGGAGTGCTTTGGCGGGACATTTT
TCAGTCCCGGCTCGATCCCAAGGCAGGTTTCGGCGAGCATCTTATCTCGG
AAGGCCTCGCAAGATTGCGCGAGGAGCAGTGGTGGACATCAGGCTACGGT
GGAGATATCGAAAGCCGTGTCCCGGAAAGGGAAGCAAACGAGGTTGGTGG
ACAACCTCGCCTCACCTTTAAATGCGAGGATGGAGGAGGCGATCCCCGGC
CGCCCTTTCCCGCGCTCGAACGCCTCCTTGACGATCGCGATAGGTTTGTT
GCCGCGGAAAGAGGCGCTAAGGGGGCGATGAAGGGTGTCTGGGGGCTGAC
TCGGCACGATAATAATAGCGGAAAGGCAGGCACAGCGACTGGTAGGGACA
GGGGTGTCATGGACGGTTTGAAAAGTCGGTCAGTGGGGGTCGTGCGCGCT
ACCATGGCTTTCTTCAGCCGGTGGCCGAAATGAAAGGCTTATTCGATCCG
TAGAGATCTAGGGGCATTTCGGCAGTTGGGGGCCAGTGAGCGCAAATACA
TATCCATGTTTGTTAACAGCGACAATTTTTGCTTTCAAGAGACTGTCGGC
TTCTTTGTGCGGGGCTTCAAAGTTCAATCGCTGTCTTTTGATTTTTTGGG
TGCTTGATCGGAGCCTAGGCGATGGAGGATTTCTCGCGGTACCCGCGGTC
GATGCATAGCCGGTATGTTGTGCGCGATCGACGTCTAGACGACTGTGCTA
GACAGTTGTGCATACCATCACGGGTGAGGACGACGATCATGGAAGGCGAA
GGTAGAATTTTTTCTTATTCGAATGCGGTGGGAATCTCGTCGGTTTTTGC
TCTGCTCTGTTCTTGGAGTAAGTAAAAAGGCTGAGTTTGTCACCAACGCT
GATGACGGGAAACTTGCGAAGGTTTTGGGCGCCGAAAACGTTCAAGGTCG
GAATGTCGCAACCTGCTATCACATGGGACCGGTCTTTCAAGCCGCCCCCT
GTACGGTCGTTTTGGTGGATTGCGTACATTCGCTTCCATCCCAAGCACGT
TTCAATTGCC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig1:3801487..3805396+ >mRNA_P-fluviatile_contig1.307.1 ID=mRNA_P-fluviatile_contig1.307.1|Name=mRNA_P-fluviatile_contig1.307.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2562bp|location=Sequence derived from alignment at P-fluviatile_contig1:3801487..3805396+ (Porterinema fluviatile SAG_2381) ATGGGGGGTGCAACCCGTAACAACGATCACGATGACCGTCAGAGATTTGA GAGCTCTAGCCGTGAAGCAGTAGCATCGATGCTCAACATGGATGAAGGAA AACGATCAGCAGCAGGCGACGGCGCGCCTCTTCATTCCTCCGGACGAAGC GAGGGGCTACTTGCTGCTCTATCCACCATGATCGACGAGAACCTCTCTTT GTTCAGATGGGGGGTGCAACCCGTAACAACGATCACGATGACCGTCAGAG ATTTGAGAGCTCTAGCCGTGAAGCAGTAGCATCGATGCTCAACATGGATG AAGGAAAACGATCAGCAGCAGGCGACGGCGCGCCTCTTCATTCCTCCGGA CGAAGCGAGGGGCTACTTGCTGCTCTATCCACCATGATCGACGAGAACCT CTCTTTGTTCAGGGCTGGAACTGCGACCATGGTTGTGGGATCGGCTCTAA CCATTTCTCTCCTCGTGTACCGTCGGGGTTTGCATGGCTGGAACTGCGAC CATGGTTGTGGGATCGGCTCTAACCATTTCTCTCCTCGTGTACCGTCGGG GTTTGCATGGTTTCGTGTCTGCCGCTCAGGTACCGGCGTCGTACTTCAAT CGCCGGAAAAGGGTGCGGGTCCGAATTGCGAAAGTGGTGGAGGCGGCGGC GGTGGTTCCACACCACACTGATGAACCCAAAGGCGGCTTTGAGCGTTGTG ATGACGTGGACAGAGGGAATGCAGATGCTGCCCTCCGTGGTGGCGGCGAC AAAGGACGGCTTGATCGGGGTTCAGACTGGTTTCGTGTCTGCCGCTCAGG TACCGGCGTCGTACTTCAATCGCCGGAAAAGGGTGCGGGTCCGAATTGCG AAAGTGGTGGAGGCGGCGGCGGTGGTTCCACACCACACTGATGAACCCAA AGGCGGCTTTGAGCGTTGTGATGACGTGGACAGAGGGAATGCAGATGCTG CCCTCCGTGGTGGCGGCGACAAAGGACGGCTTGATCGGGGTTCAGACTTG CTGCTGCACACCGAGCATGTCACCGTCCTTCGGCGGGTCCTCCGCTTGCC ACCGAGGTCCCTCGGTACGAGCGGCGGCGGCGGCACCGAGGCGGCTACGT TCACCCTGAGGCTCTGCGGGGTCGCAGCAGAAGAGCAGGGCGTTTTGCTG GCCCATGAAGAGCTGGTAAAGCCCTTGGCCGGACACTACTGCGACGCCGA GTTGCTCTTCCGGGAGCAACGATCCGGGGCTTACCCGAGCCCGAGCTCCG GGGTAGGCGATGGCACGGAAGCAAGCAGCAAGTGCTGCTGCACACCGAGC ATGTCACCGTCCTTCGGCGGGTCCTCCGCTTGCCACCGAGGTCCCTCGGT ACGAGCGGCGGCGGCGGCACCGAGGCGGCTACGTTCACCCTGAGGCTCTG CGGGGTCGCAGCAGAAGAGCAGGGCGTTTTGCTGGCCCATGAAGAGCTGG TAAAGCCCTTGGCCGGACACTACTGCGACGCCGAGTTGCTCTTCCGGGAG CAACGATCCGGGGCTTACCCGAGCCCGAGCTCCGGGGTAGGCGATGGCAC GGAAGCAAGCAGCAAGGCATTCTGGCCGGTCGCCGTCTGCCATGTCCACC GCCGTCGGGGAGTGCTTTGGCGGGACATTTTTCAGTCCCGGCTCGATCCC AAGGCAGGTTTCGGCGAGCATCTTATCTCGGAAGGCCTCGCAAGATTGCG CGAGGAGCAGTGGTGGACATCAGGCTACGGTGGAGATATCGAAAGCCGTG TCCCGGAAAGGGAAGCAAACGAGGTTGGTGGACAACCTCGCCTCACCTTT AAATGCGAGGATGGAGGAGGCGATCCCCGGCCGCCCTTTCCCGCGCTCGA ACGCCTCCTTGACGATCGCGATAGGTTTGTTGCCGCGGAAAGAGGCGCTA AGGGGGCGATGAAGGGTGTCTGGGGGCTGACTCGGCACGATAATAATAGC GGAAAGGCAGGCACAGCGACTGGTAGGGACAGGGGTGTCATGGACGGTTT GAAAAGTCGGTCAGTGGGGGTCGTGCGCGCTACCATGGCTTTCTTCAGCC GGTGGCCGAAATGAGCATTCTGGCCGGTCGCCGTCTGCCATGTCCACCGC CGTCGGGGAGTGCTTTGGCGGGACATTTTTCAGTCCCGGCTCGATCCCAA GGCAGGTTTCGGCGAGCATCTTATCTCGGAAGGCCTCGCAAGATTGCGCG AGGAGCAGTGGTGGACATCAGGCTACGGTGGAGATATCGAAAGCCGTGTC CCGGAAAGGGAAGCAAACGAGGTTGGTGGACAACCTCGCCTCACCTTTAA ATGCGAGGATGGAGGAGGCGATCCCCGGCCGCCCTTTCCCGCGCTCGAAC GCCTCCTTGACGATCGCGATAGGTTTGTTGCCGCGGAAAGAGGCGCTAAG GGGGCGATGAAGGGTGTCTGGGGGCTGACTCGGCACGATAATAATAGCGG AAAGGCAGGCACAGCGACTGGTAGGGACAGGGGTGTCATGGACGGTTTGA AAAGTCGGTCAGTGGGGGTCGTGCGCGCTACCATGGCTTTCTTCAGCCGG TGGCCGAAATGA back to top
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