mRNA_P-fluviatile_contig1.302.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.302.1
Unique NamemRNA_P-fluviatile_contig1.302.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Match: A0A6H5KYI8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.050e-10
Identity = 57/178 (32.02%), Postives = 82/178 (46.07%), Query Frame = 2 
Query:    2 RGRGQNLGRNHRGRWTYRHNSTKYRWSDCPLRLSQEAEDANEHANT-------AEAYYVGMVLTGPGTQQ*AGGARC*AEIEGASRGEARGACR**REGKEVPASALPEERAAA-----------------FGGVRALETPGLATKHEPAT-AHVQMEEAPGATEVIACSSVVQVQEQ 460
            RG+GQ+ GRN +GR  Y HNST++ W +CPLRL  EAE+A E A+T        +A++  +   G   +  A       +++                  + PA+A PEERAA                          TP  A  ++PA   + Q EEAP  TE++A SSV QV ++
Sbjct:  199 RGKGQDTGRNRKGRCRYCHNSTEHGWHNCPLRLRHEAEEATEQADTHHTQDSTTQAWFTRVETEGDVLEDYAISFGKDVQVQ------------------DAPAAAQPEERAAGDTLXXXXXXXXXXXXXXXXXXXXXXTPAAAVVYDPAANGYSQTEEAPEDTELVAFSSVFQVDKE 358
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BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Match: A0A6H5K5R9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.930e-10
Identity = 57/178 (32.02%), Postives = 82/178 (46.07%), Query Frame = 2 
Query:    2 RGRGQNLGRNHRGRWTYRHNSTKYRWSDCPLRLSQEAEDANEHANT-------AEAYYVGMVLTGPGTQQ*AGGARC*AEIEGASRGEARGACR**REGKEVPASALPEERAAA-----------------FGGVRALETPGLATKHEPAT-AHVQMEEAPGATEVIACSSVVQVQEQ 460
            RG+GQ+ GRN +GR  Y HNST++ W +CPLRL  EAE+A E A+T        +A++  +   G   +  A       +++                  + PA+A PEERAA                          TP  A  ++PA   + Q EEAP  TE++A SSV QV ++
Sbjct:  291 RGKGQDTGRNRKGRCRYCHNSTEHGWHNCPLRLRHEAEEATEQADTHHTQDSTTQAWFTRVETEGDVLEDYAISFGKDVQVQ------------------DAPAAAQPEERAAGDTLXXXXXXXXXXXXXXXXXXXXXXTPAAAVVYDPAANGYSQTEEAPEDTELVAFSSVFQVDKE 450
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BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Match: A0A6H5KC19_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC19_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-9
Identity = 56/178 (31.46%), Postives = 81/178 (45.51%), Query Frame = 2 
Query:    2 RGRGQNLGRNHRGRWTYRHNSTKYRWSDCPLRLSQEAEDANEHANT-------AEAYYVGMVLTGPGTQQ*AGGARC*AEIEGASRGEARGACR**REGKEVPASALPEERAAA-----------------FGGVRALETPGLATKHEPAT-AHVQMEEAPGATEVIACSSVVQVQEQ 460
            RG+GQ+ GRN +GR  Y HNST++ W +CPLRL  EAE+A E A+T        +A++  +   G   +  A       +++                  + PA+A PEERAA                          TP  A  ++PA   + Q EEAP  TE++A S V QV ++
Sbjct:  115 RGKGQDTGRNRKGRCRYCHNSTEHGWHNCPLRLRHEAEEATEQADTHHTQDSTTQAWFTRVETEGDVLEDYAISFGKDVQVQ------------------DAPAAAQPEERAAGDTLXXXXXXXXXXXXXXXXXXXXXXTPAAAVVYDPAANGYSQTEEAPEDTELVAFSRVFQVDKE 274
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BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Match: A0A6H5JPD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.280e-8
Identity = 53/176 (30.11%), Postives = 79/176 (44.89%), Query Frame = 2 
Query:    8 RGQNLGRNHRGRWTYRHNSTKYRWSDCPLRLSQEAEDANEHANT-------AEAYYVGMVLTGPGTQQ*AGGARC*AEIEGASRGEARGACR**REGKEVPASALPEERAAA-----------------FGGVRALETPGLATKHEPAT-AHVQMEEAPGATEVIACSSVVQVQEQ 460
            R ++ GR+ +GR  Y HNST++ W +CPLRL  EAE+A E A+T        +A++  +   G   +  A       +++                  + PA+A PEERAA                          TP  A  ++PA   + Q EEAP  TE++A SSV QV ++
Sbjct:  211 RAKDTGRSQKGRCRYCHNSTEHGWHNCPLRLRHEAEEATEQADTHHTQDSTTQAWFTRVETEGDVLEDYAISFGKDVQVQ------------------DAPAAAQPEERAAGDTLXXXXXXXXXXXXXXXXXXXXXXTPAAAVVYDPAANGYSQTEEAPEDTELVAFSSVFQVDKE 368
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BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Match: A0A6H5KM41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM41_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-7
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 2 
Query:    2 RGRGQNLGRNHRGRWTYRHNSTKYRWSDCPLRLSQEAEDANEHANT-------AEAYYVGMVLTGPGTQQ*AGGARC*AEIEGASRGEARGACR**REGKEVPASALPEERAAAFGGVRALETPGL 358
            RG+GQ+ GRN +GR  Y HNST++ W +CPLRL  EAE+A E A+T        +A++  +   G   +  A       +++                  + PA+A PEERAA    V+    P L
Sbjct:   40 RGKGQDTGRNRKGRCRYCHNSTEHGWHNCPLRLRHEAEEATEQADTHHTQDSTTQAWFTRVETEGDVLEDYAISFGKDVQVQ------------------DAPAAAQPEERAAGDTLVQDAPVPTL 147
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BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Match: A0A6H5KT70_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT70_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.200e-7
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 2 
Query:    2 RGRGQNLGRNHRGRWTYRHNSTKYRWSDCPLRLSQEAEDANEHANT-------AEAYYVGMVLTGPGTQQ*AGGARC*AEIEGASRGEARGACR**REGKEVPASALPEERAA 319
            RG+GQ+ GRN +GR  Y HNST++ W +CPLRL  EAE+A E A+T        +A++  +   G   +  A            S G+         +G++ PA+A PEERAA
Sbjct:   95 RGKGQDTGRNRKGRCRYCHNSTEHGWHNCPLRLRHEAEEATEQADTHHTQDSTTQAWFTRVETEGDVLEDYA-----------ISFGKDV-------QGQDAPAAARPEERAA 189
[Close]
BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Match: A0A6H5KII1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.590e-6
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    2 RGRGQNLGRNHRGRWTYRHNSTKYRWSDCPLRLSQEAEDANEHANT 139
            RG+GQ+ GRN +GR  Y HNST++ W +CPLRL  EAE+A E A+T
Sbjct:  225 RGKGQDTGRNRKGRCRYCHNSTEHGWHNCPLRLRHEAEEATEQADT 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KYI8_9PHAE2.050e-1032.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5R9_9PHAE2.930e-1032.02Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KC19_9PHAE1.150e-931.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JPD2_9PHAE9.280e-830.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM41_9PHAE1.210e-733.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT70_9PHAE2.200e-737.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KII1_9PHAE1.590e-658.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3756297..3758493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size641
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.302.1prot_P-fluviatile_contig1.302.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3756691..3757435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.3526807-UTR-P-fluviatile_contig1:3756296..37566901622815318.3526807-UTR-P-fluviatile_contig1:3756296..3756690Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3756297..3756690 +
1693561488.2025192-UTR-P-fluviatile_contig1:3756296..37566901693561488.2025192-UTR-P-fluviatile_contig1:3756296..3756690Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3756297..3756690 +
1622815318.381523-UTR-P-fluviatile_contig1:3757435..37574381622815318.381523-UTR-P-fluviatile_contig1:3757435..3757438Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3757436..3757438 +
1693561488.2372532-UTR-P-fluviatile_contig1:3757435..37574381693561488.2372532-UTR-P-fluviatile_contig1:3757435..3757438Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3757436..3757438 +
1622815318.3914535-UTR-P-fluviatile_contig1:3758453..37584931622815318.3914535-UTR-P-fluviatile_contig1:3758453..3758493Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3758454..3758493 +
1693561488.2459693-UTR-P-fluviatile_contig1:3758453..37584931693561488.2459693-UTR-P-fluviatile_contig1:3758453..3758493Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3758454..3758493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.3621297-CDS-P-fluviatile_contig1:3756690..37567561622815318.3621297-CDS-P-fluviatile_contig1:3756690..3756756Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3756691..3756756 +
1693561488.2172375-CDS-P-fluviatile_contig1:3756690..37567561693561488.2172375-CDS-P-fluviatile_contig1:3756690..3756756Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3756691..3756756 +
1622815318.371324-CDS-P-fluviatile_contig1:3757297..37574351622815318.371324-CDS-P-fluviatile_contig1:3757297..3757435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3757298..3757435 +
1693561488.2279654-CDS-P-fluviatile_contig1:3757297..37574351693561488.2279654-CDS-P-fluviatile_contig1:3757297..3757435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3757298..3757435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.302.1

>prot_P-fluviatile_contig1.302.1 ID=prot_P-fluviatile_contig1.302.1|Name=mRNA_P-fluviatile_contig1.302.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=68bp
MEEAPGATEVIACSSVVQVQEQVDSAGMQTMLIILLGAAMIFVRSLVQSK
WSISLKLAYCLLATYVA*
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mRNA from alignment at P-fluviatile_contig1:3756297..3758493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.302.1 ID=mRNA_P-fluviatile_contig1.302.1|Name=mRNA_P-fluviatile_contig1.302.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2197bp|location=Sequence derived from alignment at P-fluviatile_contig1:3756297..3758493+ (Porterinema fluviatile SAG_2381)
TCGAGGACGGGGTCAGAATCTTGGCCGGAACCACAGGGGGCGCTGGACGT
ACCGTCACAATTCGACCAAGTACCGGTGGAGCGACTGCCCCCTCCGCCTC
TCGCAGGAGGCTGAAGATGCCAACGAACACGCAAACACCGCAGAAGCCTA
CTACGTAGGCATGGTTCTCACAGGTCCAGGAACACAGCAGTAAGCTGGTG
GGGCGCGTTGCTGAGCTGAAATCGAAGGCGCCAGCCGCGGCGAAGCCAGA
GGAGCGTGCCGCTGATGACGAGAGGGGAAGGAGGTGCCTGCTTCAGCGCT
GCCCGAGGAGCGCGCTGCTGCTTTTGGTGGTGTGCGGGCACTGGAGACGC
CCGGATTAGCCACGAAACATGAGCCTGCTACCGCACACGTACAGATGGAG
GAAGCACCCGGTGCAACGGAGGTGATTGCATGCAGCAGCGTCGTTCAAGT
ACAGGAACAGGTCGGGTCCGTCGACAACACAACAGTTTTCTTCGTAGATT
CCGCAGTGTCTAGCCACAAGATCAGCCAAGATTCTCTCGCGTCTCACCAT
GTTACCGAGAGGCCGGACTGCAATGTGCGGGTCAAGGGGTCGTGTTGGAT
GTCAACCGCAACTCAGAAAGGCGCTCTGCATTTCGGCATCCACAATGACC
GAAACCGAATCATACCGGTGGCGCTAGCAGTTCTGCTGGTCACCGACCTA
GGGGCTAACATAAGCTCAGTTGGAGCATTGCAAGAAAAGAGGGTGATGGG
TGACCTGGTGTGTTTTGACGCTGACTGAGTAGTCAAATGGATAAGCCTTT
ATCAAACAAAAGATTTGTGCTTTGTTTCCTCTCAGATACGTTCGAAATTT
TGAACGAGCGAGAATTGAGGCAAACCTTGTTGAGACCGTGCCTCAGCCCC
GACTTCCCTTCGCGCCGAAATATGAACCGACTGTTCAACATCCGCCCCTG
CCCCGTTGTTTCGTGCACTCCTACGTGCCGTGGTGATGCTGCCACACAAA
GGTCGACTCTGCGGGCATGCAGACAATGCTCATCATCCTCCTTGGCGCGG
CGATGATCTTTGTCCGCAGCCTTGTCCAAAGCAAATGGAGCATAAGCTTG
AAACTGGCCTACTGCCTGCTCGCCACGTACGTCGCCTAAGTTGTGAGTAC
CATTGTCGCGGAGACGACGAAGTGGCGCGTGTTGACTGAGTGGATTTTGT
GTTCTGTCTTGTTTTTTTTTCGAGTTGGACGGGTACGCTGATTTGCAAGT
GCCCGAAATGGCATTGCTCTCACACTCGATTGGGCGATTGGTTCAAAATT
GCCTCACGAGGTCGATGAGACGTGAGTCCTTTTCAGTCGAAAGTGTATCC
GGGATGGTCTGATGAAGTATGACTTGACGAAAGTATCGTCCTTACTGCGC
GAGGTGGAGTACTCTCATGCCAACGAGAGCGCTTTTAGGGACGGGGGGGA
GGCATGCGGAACGTAAGTTTCAAACATTTATGGGCAGGCAAGACATGGGG
TAGGGAAACAGCAGTGGGCTTGGGTGAATAAGTGCGACCGCAGGCGTTCT
TGGCTTTATTCGGGAGGGACACAGATCACTTGTCGGCTTTTTTAGGCTAG
CGAAACAACGTAGGCACAAGCAGTTTGATGCAAGATGATATTGAAGTCAG
CCTAAACTAGCGAGGGGGTGTCTGTTAGCCATGCACACACGCAATAAACG
CACACAATGGACGAGAAACTCGCGCGGAAGGCTGGTATTCTTTCACGATC
AAATTCGAGGGAACCGTAGAAAAGAATAAGAAAAGCTCGGGGATAATAGG
TAGGGGTCATCCCAGTCGATTACGTTGGTTTGACGTCGTGAACACCAAAC
CGACAGGGGGACAGAACACCGGCGAAGTTGATACGACTACGTGGTACAGT
GTATGTCATTCCATGGCCTAGCGGACAGACACCTGCTGTTGGCGCATAGC
CTCTAGGCGCCGACTCCGCTGCTACTCTCGAAAGGGCCGAGGCAATTGGG
CAGGAGGCAAAGCTTGGGGGCATTGCGACGCCGGGATTGGTCGGATTAAT
TGCGGTTCGGTGAACTGATGTCCTGGGCGCTATCCTCGACTCAGCGATGA
GTTTCGCATGCAGAACACGGGAAACCATCGCGAACTTGTTTCTCTGTAGT
CGTGCAGAAGCATCGACGGGGGCGCCTACAAAGGCGTCAGGTGCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3756297..3758493+

>mRNA_P-fluviatile_contig1.302.1 ID=mRNA_P-fluviatile_contig1.302.1|Name=mRNA_P-fluviatile_contig1.302.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=408bp|location=Sequence derived from alignment at P-fluviatile_contig1:3756297..3758493+ (Porterinema fluviatile SAG_2381)
ATGGAGGAAGCACCCGGTGCAACGGAGGTGATTGCATGCAGCAGCGTCGT
TCAAGTACAGGAACAGATGGAGGAAGCACCCGGTGCAACGGAGGTGATTG
CATGCAGCAGCGTCGTTCAAGTACAGGAACAGGTCGACTCTGCGGGCATG
CAGACAATGCTCATCATCCTCCTTGGCGCGGCGATGATCTTTGTCCGCAG
CCTTGTCCAAAGCAAATGGAGCATAAGCTTGAAACTGGCCTACTGCCTGC
TCGCCACGTACGTCGCCTAAGTCGACTCTGCGGGCATGCAGACAATGCTC
ATCATCCTCCTTGGCGCGGCGATGATCTTTGTCCGCAGCCTTGTCCAAAG
CAAATGGAGCATAAGCTTGAAACTGGCCTACTGCCTGCTCGCCACGTACG
TCGCCTAA
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