mRNA_P-fluviatile_contig1.300.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.300.1
Unique NamemRNA_P-fluviatile_contig1.300.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.300.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.060e-39
Identity = 79/141 (56.03%), Postives = 102/141 (72.34%), Query Frame = 2 
Query:  209 SVEREDLNGNLHVQGTLILGMVLSFDEEKHAEATLPQEIQTEIGWTSKDKVNIMIKRLSRHQTFSG-VGNCSKDEGKPHFRTVMKDVSMAEKNVALSEYRRIQRNV-PEHRLELGKKNFRGLLNRFKMEHLDGIVAAPLQL 625
            S+ER D+NGNLH+QG   L +   F + K  EA L ++++ + GWT+ DKV I IKRL + QTFSG VG+CSKDEG+ HF+TV K VS  E N+AL+EYR +QR+V  E R E+GKKNF G+L RFK EHL GI  +P+QL
Sbjct:  181 SMERGDMNGNLHLQGIWTLALKKDFGDSKKEEAALRRKLRVDCGWTAADKVKITIKRLIKQQTFSGMVGDCSKDEGRSHFKTVTKGVSRTEVNIALTEYRTLQRSVVSELRTEIGKKNFWGVLRRFKQEHLRGISVSPVQL 321
[Close]
BLAST of mRNA_P-fluviatile_contig1.300.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 3.240e-38
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 2 
Query:  206 MSVEREDLNGNLHVQGTLILGMVLSFDEEKHAEATLPQEIQTEIGWTSKDKVNIMIKRLSRHQTFSGV-GNCSKDEGKPHFRTVMKDVSMAEKNVALSEYRRIQRN-VPEHRLELGKKNFRGLLNRFKMEHLDGIVAAPLQL 625
            +S+ER +++GNLH+QG L  G+V  FD+ +  EA + + I+    W S  KV I+IKRL R QTFSG+ G CSKD+G+PHF+T  K VS  E NVAL+EYR++QR  V E R+ELGKKNF GLL RFK EHL GI  +PLQ+
Sbjct:    6 VSLERGNVHGNLHLQGILTAGLVKYFDDPRKEEAAMRKSIRQACEWKSHVKVKIVIKRLMRQQTFSGMLGYCSKDQGRPHFKTSSKGVSQTEINVALAEYRKLQRVCVTEDRVELGKKNFWGLLRRFKQEHLRGIFVSPLQM 147
[Close]
BLAST of mRNA_P-fluviatile_contig1.300.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.270e-36
Identity = 78/141 (55.32%), Postives = 100/141 (70.92%), Query Frame = 2 
Query:  209 SVEREDLNGNLHVQGTLILGMVLSFDEEKHAEATLPQEIQTEIGWTSKDKVNIMIKRLSRHQTFSG-VGNCSKDEGKPHFRTVMKDVSMAEKNVALSEYRRIQRNV-PEHRLELGKKNFRGLLNRFKMEHLDGIVAAPLQL 625
            S+ER D+NGNLH+QG   L +   F + K  EA L ++++ + GWT+ DKV I IKRL + QTFSG VG CSKDEG+ HF+TV K VS  E N+AL+EYR +QR V  E R ++GKKNF G+L RFK EHL GI  +P+QL
Sbjct:  356 SMERGDINGNLHLQGIWTLALKKDFGDSKKEEAALRRKLRVDCGWTAADKVKITIKRLIKQQTFSGMVGYCSKDEGRSHFKTVTKGVSRTEVNIALAEYRTLQRFVVSELRTDIGKKNFWGVLRRFKQEHLRGISVSPVQL 496
[Close]
BLAST of mRNA_P-fluviatile_contig1.300.1 vs. uniprot
Match: D7G6Z2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.490e-13
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:  206 MSVEREDLNGNLHVQGTLILGMVLSFDEEKHAEATLPQEIQTEIGWTSKDKVNIMIKRLSRHQTFSGV-GNCSKDEGKPH 442
            +S+ER +++GNLH+QG L  G+V  FD+ +  EA + + ++    W S  KV I+IKRL R QTFSG+ G CSKD+G+PH
Sbjct:  306 VSLERGNVHGNLHLQGILTAGLVKHFDDPRKEEAAMRKSMRQACEWKSHVKVKIVIKRLMRQQTFSGMLGYCSKDQGRPH 385
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBK2_ECTSI1.060e-3956.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI3.240e-3855.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPH8_ECTSI1.270e-3655.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6Z2_ECTSI1.490e-1348.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3720592..3722172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size859
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.300.1prot_P-fluviatile_contig1.300.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3720805..3722087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.0824344-UTR-P-fluviatile_contig1:3720591..37208041622815318.0824344-UTR-P-fluviatile_contig1:3720591..3720804Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3720592..3720804 -
1693561487.1403978-UTR-P-fluviatile_contig1:3720591..37208041693561487.1403978-UTR-P-fluviatile_contig1:3720591..3720804Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3720592..3720804 -
1622815318.1239574-UTR-P-fluviatile_contig1:3722087..37221721622815318.1239574-UTR-P-fluviatile_contig1:3722087..3722172Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3722088..3722172 -
1693561487.1907485-UTR-P-fluviatile_contig1:3722087..37221721693561487.1907485-UTR-P-fluviatile_contig1:3722087..3722172Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3722088..3722172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.093804-CDS-P-fluviatile_contig1:3720804..37208251622815318.093804-CDS-P-fluviatile_contig1:3720804..3720825Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3720805..3720825 -
1693561487.1488707-CDS-P-fluviatile_contig1:3720804..37208251693561487.1488707-CDS-P-fluviatile_contig1:3720804..3720825Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3720805..3720825 -
1622815318.1041682-CDS-P-fluviatile_contig1:3721242..37214631622815318.1041682-CDS-P-fluviatile_contig1:3721242..3721463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3721243..3721463 -
1693561487.1575906-CDS-P-fluviatile_contig1:3721242..37214631693561487.1575906-CDS-P-fluviatile_contig1:3721242..3721463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3721243..3721463 -
1622815318.1148598-CDS-P-fluviatile_contig1:3721768..37220871622815318.1148598-CDS-P-fluviatile_contig1:3721768..3722087Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3721769..3722087 -
1693561487.1790886-CDS-P-fluviatile_contig1:3721768..37220871693561487.1790886-CDS-P-fluviatile_contig1:3721768..3722087Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3721769..3722087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.300.1

>prot_P-fluviatile_contig1.300.1 ID=prot_P-fluviatile_contig1.300.1|Name=mRNA_P-fluviatile_contig1.300.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=187bp
MLPHAKHSVGDSREGERQQPPAGGQGARVWLDEGYGGSWRMSVEREDLNG
NLHVQGTLILGMVLSFDEEKHAEATLPQEIQTEIGWTSKDKVNIMIKRLS
RHQTFSGVGNCSKDEGKPHFRTVMKDVSMAEKNVALSEYRRIQRNVPEHR
LELGKKNFRGLLNRFKMEHLDGIVAAPLQLAGRADA*
back to top

mRNA from alignment at P-fluviatile_contig1:3720592..3722172-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.300.1 ID=mRNA_P-fluviatile_contig1.300.1|Name=mRNA_P-fluviatile_contig1.300.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1581bp|location=Sequence derived from alignment at P-fluviatile_contig1:3720592..3722172- (Porterinema fluviatile SAG_2381)
CATCGACGAGGAGTCCCAGCGCCGGGGGTCGGTGATTGGATGCCTTCCGT
CCGTTAGCACGGAGGTCAAGCAGGTCCAAGACAGCATGCTACCGCACGCG
AAGCATAGCGTAGGTGACTCTCGGGAAGGCGAACGGCAGCAACCTCCCGC
CGGAGGCCAGGGAGCACGCGTTTGGTTGGATGAAGGATACGGCGGTTCGT
GGCGGATGAGCGTGGAGCGTGAAGACCTCAACGGCAATCTTCACGTTCAA
GGCACCTTGATCTTGGGCATGGTACTAAGCTTCGACGAGGAGAAGCACGC
GGAGGCCACTTTGCCTCAAGAGATCCAAACGGAGATCGGGTGGACATCCA
AGGATAAGGTCAATATCATGATCAAGCGTCTGAGCCGGCACCAGACTTTC
AGTGGTGAGGCCAGAGAGGCTTCCTTTCGTTTAAGGAGAACTTGGAAGCT
GTGTCAGCGGCTGAAAGTCATGCTGGAGTTTTTTTGGAAGCATTGAATCA
TTCATCAAGCGGTTGCATGTTGTTACGTGTTTCGGATTTTCCCCCATGTT
GGAGTTGAAGGGGTAGTCTACATATTGGAGTTAAATGGGTATTAAAAGGA
AAGATGAGCGGTGTTGGGAAGGATCGGATTGGCCGCAGCAAAGCAAGTCT
CATGCGCTCCTTTTCGTTTCCGTCGCTCTCTATTTGTCGTTGGACGCCTC
GGCCGTCAGGGGTCGGAAACTGCTCGAAGGACGAGGGAAAGCCGCACTTC
AGGACGGTAATGAAGGACGTGTCAATGGCGGAGAAAAACGTTGCTCTTTC
GGAGTACCGGCGGATTCAGCGCAATGTTCCGGAGCACCGGTTGGAGCTGG
GCAAGAAAAATTTCCGAGGGCTTCTGAATCGGTTCAAGATGGAGCATCTC
GACGGCATCGTGGCTGCTCCCCTTCAGCTGGTACGTCATCTTCTGTGTAC
ACGACTAACGTGTGACACTGGTTGCGGGTGCCATGGAAACCCAAGTGGGA
AAAATCGTTGAAATACGGAGGACAGGAAAGAGCAGCTCATGCGCTTCTTC
TGCAGAAAATGATGGCCAGTCAAGCTGGTTTCACATGCGTGGCTCACTCA
TTGATCAGTCCAGCAGAAATTCGACAGGGAAACCGCGTTTGTTATTGTGT
GTAATGGTGGAATGCGTACTTTTTGGCACTTCAGATCACGTGGTTCATCC
CTAGCGGTGAAGGAATGCCAAGTCGCGCATGGATCTAATTGACCAGCGCT
TATGGCGTGGAGGTAGCGCGCACGGACGTGTTCTTCATCGGGCTGACGAC
TCCAACGCTTTTCACTCGCTAACACGCGTATCTCCTGTTCCTCTCAGGCG
GGCAGGGCGGACGCGTGAGAAGCTTGTTTGTTCTGTGGGACAATACGGAC
ATCGAGTTCTCGATCGTGTCCATCGACGAAGCAAACGTGTGCTCCCACGA
TCGACAGCAGCTGGAGGGGGCACGTGATAACCCGCGCCAGGAGGTAACCC
GCGATATGGCGGCGGCTCGACATTCGTCGAGCTCTGGCGCGACGAACTTC
CAAATCGGGCCAGACTCCAGTGACGAGGAGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:3720592..3722172-

>mRNA_P-fluviatile_contig1.300.1 ID=mRNA_P-fluviatile_contig1.300.1|Name=mRNA_P-fluviatile_contig1.300.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1122bp|location=Sequence derived from alignment at P-fluviatile_contig1:3720592..3722172- (Porterinema fluviatile SAG_2381)
ATGCTACCGCACGCGAAGCATAGCGTAGGTGACTCTCGGGAAGGCGAACG
GCAGCAACCTCCCGCCGGAGGCCAGGGAGCACGCGTTTGGTTGGATGAAG
GATACGGCGGTTCGTGGCGGATGAGCGTGGAGCGTGAAGACCTCAACGGC
AATCTTCACGTTCAAGGCACCTTGATCTTGGGCATGGTACTAAGCTTCGA
CGAGGAGAAGCACGCGGAGGCCACTTTGCCTCAAGAGATCCAAACGGAGA
TCGGGTGGACATCCAAGGATAAGGTCAATATCATGATCAAGCGTCTGAGC
CGGCACCAGACTTTCAGTGATGCTACCGCACGCGAAGCATAGCGTAGGTG
ACTCTCGGGAAGGCGAACGGCAGCAACCTCCCGCCGGAGGCCAGGGAGCA
CGCGTTTGGTTGGATGAAGGATACGGCGGTTCGTGGCGGATGAGCGTGGA
GCGTGAAGACCTCAACGGCAATCTTCACGTTCAAGGCACCTTGATCTTGG
GCATGGTACTAAGCTTCGACGAGGAGAAGCACGCGGAGGCCACTTTGCCT
CAAGAGATCCAAACGGAGATCGGGTGGACATCCAAGGATAAGGTCAATAT
CATGATCAAGCGTCTGAGCCGGCACCAGACTTTCAGTGGGGTCGGAAACT
GCTCGAAGGACGAGGGAAAGCCGCACTTCAGGACGGTAATGAAGGACGTG
TCAATGGCGGAGAAAAACGTTGCTCTTTCGGAGTACCGGCGGATTCAGCG
CAATGTTCCGGAGCACCGGTTGGAGCTGGGCAAGAAAAATTTCCGAGGGC
TTCTGAATCGGTTCAAGATGGAGCATCTCGACGGCATCGTGGCTGCTCCC
CTTCAGCTGGGGTCGGAAACTGCTCGAAGGACGAGGGAAAGCCGCACTTC
AGGACGGTAATGAAGGACGTGTCAATGGCGGAGAAAAACGTTGCTCTTTC
GGAGTACCGGCGGATTCAGCGCAATGTTCCGGAGCACCGGTTGGAGCTGG
GCAAGAAAAATTTCCGAGGGCTTCTGAATCGGTTCAAGATGGAGCATCTC
GACGGCATCGTGGCTGCTCCCCTTCAGCTGGCGGGCAGGGCGGACGCGTG
AGCGGGCAGGGCGGACGCGTGA
back to top