mRNA_P-fluviatile_contig1.295.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.295.1
Unique NamemRNA_P-fluviatile_contig1.295.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3647345..3647850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.6536407-UTR-P-fluviatile_contig1:3647344..36475171622815269.6536407-UTR-P-fluviatile_contig1:3647344..3647517Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3647345..3647517 +
1693561321.2077124-UTR-P-fluviatile_contig1:3647344..36475171693561321.2077124-UTR-P-fluviatile_contig1:3647344..3647517Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3647345..3647517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.66752-CDS-P-fluviatile_contig1:3647517..36478501622815269.66752-CDS-P-fluviatile_contig1:3647517..3647850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3647518..3647850 +
1693561321.2744725-CDS-P-fluviatile_contig1:3647517..36478501693561321.2744725-CDS-P-fluviatile_contig1:3647517..3647850Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3647518..3647850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.295.1prot_P-fluviatile_contig1.295.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3647518..3647850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.295.1

>prot_P-fluviatile_contig1.295.1 ID=prot_P-fluviatile_contig1.295.1|Name=mRNA_P-fluviatile_contig1.295.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MPRQILMNLISPCAESLSHQLSSLWTGKGRLFCLGCDGVLFALCCLWVRR
FPWCKSTRYYRRREIRNKPLALLNLCFRQVLYIPLRLMLRLWDEPICARA
YPLPFPRRPST
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mRNA from alignment at P-fluviatile_contig1:3647345..3647850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.295.1 ID=mRNA_P-fluviatile_contig1.295.1|Name=mRNA_P-fluviatile_contig1.295.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=506bp|location=Sequence derived from alignment at P-fluviatile_contig1:3647345..3647850+ (Porterinema fluviatile SAG_2381)
GGAGCTTACCGCTGGACGCAGGTGAACGTGAAAAAGAAGTGATATGCTAC
AGGCCACCTTTCCCCGACCAAACGACGTGTGAAATAGGTGTGCTTCATCG
TCGAGGAGAATTGAGAGCAGAAAGCAAACGCGACGTGTGGGATGGATGGG
TCGCGAACTAAGCTGCCCAGTGGATGCCACGCCAAATTCTCATGAATTTG
ATAAGCCCGTGCGCGGAATCATTGTCGCACCAATTATCGAGTCTTTGGAC
CGGAAAGGGTCGCCTCTTTTGCCTTGGATGCGACGGAGTACTCTTCGCCC
TTTGCTGCTTATGGGTACGACGATTTCCTTGGTGCAAAAGCACGCGCTAT
TATCGACGTCGAGAAATTCGAAACAAGCCTTTAGCCCTGCTGAATCTATG
TTTCCGACAAGTGTTATACATCCCACTCCGACTTATGCTACGATTATGGG
ATGAGCCAATCTGCGCTCGTGCCTACCCTCTACCCTTTCCACGTCGTCCT
TCAACA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3647345..3647850+

>mRNA_P-fluviatile_contig1.295.1 ID=mRNA_P-fluviatile_contig1.295.1|Name=mRNA_P-fluviatile_contig1.295.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig1:3647345..3647850+ (Porterinema fluviatile SAG_2381)
ATGCCACGCCAAATTCTCATGAATTTGATAAGCCCGTGCGCGGAATCATT
GTCGCACCAATTATCGAGTCTTTGGACCGGAAAGGGTCGCCTCTTTTGCC
TTGGATGCGACGGAGTACTCTTCGCCCTTTGCTGCTTATGGGTACGACGA
TTTCCTTGGTGCAAAAGCACGCGCTATTATCGACGTCGAGAAATTCGAAA
CAAGCCTTTAGCCCTGCTGAATCTATGTTTCCGACAAGTGTTATACATCC
CACTCCGACTTATGCTACGATTATGGGATGAGCCAATCTGCGCTCGTGCC
TACCCTCTACCCTTTCCACGTCGTCCTTCAACAATGCCACGCCAAATTCT
CATGAATTTGATAAGCCCGTGCGCGGAATCATTGTCGCACCAATTATCGA
GTCTTTGGACCGGAAAGGGTCGCCTCTTTTGCCTTGGATGCGACGGAGTA
CTCTTCGCCCTTTGCTGCTTATGGGTACGACGATTTCCTTGGTGCAAAAG
CACGCGCTATTATCGACGTCGAGAAATTCGAAACAAGCCTTTAGCCCTGC
TGAATCTATGTTTCCGACAAGTGTTATACATCCCACTCCGACTTATGCTA
CGATTATGGGATGAGCCAATCTGCGCTCGTGCCTACCCTCTACCCTTTCC
ACGTCGTCCTTCAACA
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