mRNA_P-fluviatile_contig1.294.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.294.1
Unique NamemRNA_P-fluviatile_contig1.294.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.294.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 4.400e-118
Identity = 173/203 (85.22%), Postives = 187/203 (92.12%), Query Frame = 1 
Query:    1 AQSATGRGQRNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQKKKQEELEAASSTSHVTERQEKLSERNGEGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKNIGVIFDESRVRIDGGVHVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRRFILHLTDTTSP 609
            +QSATGRGQRNRRARDLDAM TGAGKQDEDHDHWQAREAVWASW DQEAYDKKMAETKDRRDAARTVHEAKQK+KQEELEAASSTSHVTERQEK+S+ NGE DI+I +GVY+KR E++HL+YYYDKSY FDPK+IGV+F E+ V IDGGVHVVKSVD GKY LEG +STITQWELL NRC EGVTLDTDLRRFI HLTDTTSP
Sbjct:    3 SQSATGRGQRNRRARDLDAMQTGAGKQDEDHDHWQAREAVWASWADQEAYDKKMAETKDRRDAARTVHEAKQKEKQEELEAASSTSHVTERQEKVSDGNGEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLTDTTSP 205
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BLAST of mRNA_P-fluviatile_contig1.294.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 3.220e-96
Identity = 155/197 (78.68%), Postives = 170/197 (86.29%), Query Frame = 1 
Query:    1 AQSATGRGQRNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQKKKQEELEAASSTSHVTERQEKLSERNGEGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKNIGVIFDESRVRIDGGVHVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRRFILHL 591
            +QSA  RG RNR A     MPTGA K+D+DHDHW+ REAVWA WGDQEAYDKKMAETK++RDAAR VHEA QKK+Q ELEAASST HVTERQE+ S+ NGEGDI+ISDGVYYKRAEL+ LQYYYDKSYAFDPKNIGV+  E+ V+ID  +H VKSVDHGKYTLEGRES ITQWELLENRCDE VTLDTDLRRFILHL
Sbjct:    3 SQSAARRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQAELEAASSTPHVTERQEEGSDGNGEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHL 199
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BLAST of mRNA_P-fluviatile_contig1.294.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 5.520e-63
Identity = 143/332 (43.07%), Postives = 163/332 (49.10%), Query Frame = 1 
Query:   28 RNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQKKKQEELEAASSTSHVTERQE-----------------------------------------------------------------------------------------------------------------KLSERNG-------------------------------EGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKNIGVIFDESRVRIDGGVHVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRRFILHL 591
            RNR A     MPTGA K+D+DHDHW+ REA WA WG Q+A DKKMA+TK++RD AR VHEA QKK++E+LEA SST HVTERQE                                                                                                                 K  ER+G                               +GDI+ISDGVYYKRAEL++LQYYYDKSY  DP+NI V+F ++RV+IDGGVHVVKSVDHGKYTLEGRESTITQWELLE RCDEGVTL TDLRRFILHL
Sbjct:   24 RNRTATVPGKMPTGADKKDQDHDHWRKREAEWAGWGVQKASDKKMADTKEKRDDAREVHEANQKKREEDLEATSSTPHVTERQEEGSLGNRAKTTAAAIPEDNRLEAMDVDGVGGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTWNGGGPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHL 355
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BLAST of mRNA_P-fluviatile_contig1.294.1 vs. uniprot
Match: A0A6H5JU26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU26_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.060e-22
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   58 MPTGAGKQDEDHDHWQAREAVWASWGDQEAYDKKMAETKDRRDAARTVHEAKQKKKQ 228
            MPTGAGK+D+DHDHW  REAVWA WG QEAYDKKMAETK+RRDAAR  HE K+K+KQ
Sbjct:    1 MPTGAGKKDQDHDHWPLREAVWAGWGYQEAYDKKMAETKERRDAAREAHEIKRKEKQ 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQV3_ECTSI4.400e-11885.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ27_ECTSI3.220e-9678.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE5.520e-6343.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU26_9PHAE7.060e-2278.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3624556..3626192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue3.5e-13
Seed eggNOG ortholog2880.D7FHJ0
EggNOG OGs2EVBK@1,2SXC2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size612
Cds size612
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.294.1prot_P-fluviatile_contig1.294.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3624556..3626192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815317.4810963-CDS-P-fluviatile_contig1:3624555..36245761622815317.4810963-CDS-P-fluviatile_contig1:3624555..3624576Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3624556..3624576 -
1693561484.9086308-CDS-P-fluviatile_contig1:3624555..36245761693561484.9086308-CDS-P-fluviatile_contig1:3624555..3624576Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3624556..3624576 -
1622815317.4914591-CDS-P-fluviatile_contig1:3624829..36251231622815317.4914591-CDS-P-fluviatile_contig1:3624829..3625123Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3624830..3625123 -
1693561484.9201074-CDS-P-fluviatile_contig1:3624829..36251231693561484.9201074-CDS-P-fluviatile_contig1:3624829..3625123Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3624830..3625123 -
1622815317.505621-CDS-P-fluviatile_contig1:3625895..36261921622815317.505621-CDS-P-fluviatile_contig1:3625895..3626192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3625896..3626192 -
1693561484.9281988-CDS-P-fluviatile_contig1:3625895..36261921693561484.9281988-CDS-P-fluviatile_contig1:3625895..3626192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3625896..3626192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.294.1

>prot_P-fluviatile_contig1.294.1 ID=prot_P-fluviatile_contig1.294.1|Name=mRNA_P-fluviatile_contig1.294.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=204bp
AQSATGRGQRNRRARDLDAMPTGAGKQDEDHDHWQAREAVWASWGDQEAY
DKKMAETKDRRDAARTVHEAKQKKKQEELEAASSTSHVTERQEKLSERNG
EGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKNIGVIFDESRVRIDGGV
HVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRRFILHLTDT
TSP*
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mRNA from alignment at P-fluviatile_contig1:3624556..3626192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.294.1 ID=mRNA_P-fluviatile_contig1.294.1|Name=mRNA_P-fluviatile_contig1.294.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1637bp|location=Sequence derived from alignment at P-fluviatile_contig1:3624556..3626192- (Porterinema fluviatile SAG_2381)
GCGCAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCT
GGATGCGATGCCGACCGGAGCTGGCAAGCAAGATGAAGACCACGATCACT
GGCAAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTAT
GACAAGAAAATGGCCGAGACGAAGGATCGGCGCGACGCGGCACGCACGGT
GCACGAGGCCAAACAGAAGAAAAAACAGGAGGAGTTGGAGGCTGCCTCTT
CAACATCGCACGTAACCGAGAGGCAGGAGAAGCTTTCCGAACGAAATGTG
AGAAATTTGTGATTGGTTTGTTGCTGCTGGTATGATCAGACGACACACGT
TGCCCCCACACATCGGTTGCGCTTGTGTACGCAACCGCCTTCCGCTCCCT
CTTTCGCTGAAATTGACACCGTCTTCCCATCTCTCTCACTCAATAAAACA
GTGTCAGTCAAAGAGGGCGGTGGGAGCGGAGGAAGCGCAACATCATCCGG
TTGGTGGACGAAAGAGGGCGAAAAAAACGGCCGATGCGACTCCTGAAGAC
AATCGTCTCGAGGCTATGGACGTTGATGACGTTGGTGGAGACGTTGGTGG
CGACTTTGGTGGAGACTTTGGTGGAGATGGCAGCGATGACGTCGGTGGAA
GCGGTGGTACCGGTGGCAGCGGTGGAGATGGCAGCGATGATGACGGTGGC
AGCGGTGGCGGTGGTGGCAGCGGCGGAGATGGCGGCGATGACGACGGTGG
CAGCGATGGCGGTGGCAGCGACAAGGTTGGTGGCGGTGGCACGGGTGGCG
GTAGTAGCGGCGGTGGTGGCGGCGCCCCCGTGCGGAAGGTCGTGTATAAG
AAACGACTAAAACTATACTCTTCTACAAAAATAATCGCACGCCTGGTTGA
GCCGTGGCAGGACGGAAGTCGTGAGTGGATGGACAGCAAAAAAGAGTCGG
GTGGTGAGAAAGCTCAAGAGAGGGATGGTACGTTCTCCCGCGCAGCAAAT
GAACCGAGTGGAAACACTTCGATACCGGTCATGGTCAAACTACTGGGTGA
TGGCCTGTGTGCTGACCAGGGCGAGGGTGACATCAAGATCTCAGACGGGG
TGTACTACAAGCGTGCAGAGCTTCAGCATTTGCAGTATTACTACGACAAG
TCCTACGCGTTCGACCCGAAGAACATCGGTGTGATTTTCGACGAGTCGAG
AGTCAGGATCGATGGAGGGGTCCACGTGGTGAAATCAGTCGATCACGGCA
AGTACACACTGGAAGGTCGGGAATCCACAATCACCCAGTGGGAGCTGCTG
GAAAACCGGTGCGATGAGGGGGTGACACTGGACACCGACCTCCGGCGGTT
CATCCTCCATCTGGTGACAAAGTATACGGTCATGATGGCGTCGGTTGTAC
CGGCTCTCAGCGGCGTGTTAACTGGGATGCTCTGGAACCCGAATGATGCC
ATAGACAGAGCCAATGGGAGTGGTGACGACACAGACCCAGAGAGCAACAT
GAAGACCATCGAGCTAATGTCGATCAAAGAGCGCGTGGATACTCTGCGGG
ACTTGTCGCTGGCTGTCTTCACCAAAATCCCCATGGAAGACACCCTGCCT
GCAAACTTCTGGTCAGACCGACACGACGAGTCCTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3624556..3626192-

>mRNA_P-fluviatile_contig1.294.1 ID=mRNA_P-fluviatile_contig1.294.1|Name=mRNA_P-fluviatile_contig1.294.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1224bp|location=Sequence derived from alignment at P-fluviatile_contig1:3624556..3626192- (Porterinema fluviatile SAG_2381)
GCGCAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCT
GGATGCGATGCCGACCGGAGCTGGCAAGCAAGATGAAGACCACGATCACT
GGCAAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTAT
GACAAGAAAATGGCCGAGACGAAGGATCGGCGCGACGCGGCACGCACGGT
GCACGAGGCCAAACAGAAGAAAAAACAGGAGGAGTTGGAGGCTGCCTCTT
CAACATCGCACGTAACCGAGAGGCAGGAGAAGCTTTCCGAACGAAATGCG
CAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCTGGA
TGCGATGCCGACCGGAGCTGGCAAGCAAGATGAAGACCACGATCACTGGC
AAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTATGAC
AAGAAAATGGCCGAGACGAAGGATCGGCGCGACGCGGCACGCACGGTGCA
CGAGGCCAAACAGAAGAAAAAACAGGAGGAGTTGGAGGCTGCCTCTTCAA
CATCGCACGTAACCGAGAGGCAGGAGAAGCTTTCCGAACGAAATGGCGAG
GGTGACATCAAGATCTCAGACGGGGTGTACTACAAGCGTGCAGAGCTTCA
GCATTTGCAGTATTACTACGACAAGTCCTACGCGTTCGACCCGAAGAACA
TCGGTGTGATTTTCGACGAGTCGAGAGTCAGGATCGATGGAGGGGTCCAC
GTGGTGAAATCAGTCGATCACGGCAAGTACACACTGGAAGGTCGGGAATC
CACAATCACCCAGTGGGAGCTGCTGGAAAACCGGTGCGATGAGGGGGTGA
CACTGGACACCGACCTCCGGCGGTTCATCCTCCATCTGGGCGAGGGTGAC
ATCAAGATCTCAGACGGGGTGTACTACAAGCGTGCAGAGCTTCAGCATTT
GCAGTATTACTACGACAAGTCCTACGCGTTCGACCCGAAGAACATCGGTG
TGATTTTCGACGAGTCGAGAGTCAGGATCGATGGAGGGGTCCACGTGGTG
AAATCAGTCGATCACGGCAAGTACACACTGGAAGGTCGGGAATCCACAAT
CACCCAGTGGGAGCTGCTGGAAAACCGGTGCGATGAGGGGGTGACACTGG
ACACCGACCTCCGGCGGTTCATCCTCCATCTGACCGACACGACGAGTCCT
TGAACCGACACGACGAGTCCTTGA
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