mRNA_P-fluviatile_contig1.290.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 706 bits (1822), Expect = 1.620e-246 Identity = 388/510 (76.08%), Postives = 394/510 (77.25%), Query Frame = 3
Query: 570 GHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATSVEAFDGVWKDVEDLVKGTDCEEYILNFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQASLGKGYVENDVKKSMEKVMTAYAEVGASKYATEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSANDSTIQR-----------------------------TLVGTTM-----ELATCVA-KCLKRSLRKMKLQIRLCLVPHPCILSAGSSSALKLIASSRSCTNTSLTARWATLSS*DPVGFSFARAYNY*DGGCSVGIVLAALVTRLKRSDEFKGQSIHLRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWEPSGDFEDLQGDNTSVSVLSVLRGRAFANLTELCNRAVRTYTDSMTRDSTTADQSMFGDLMRHVNDFVEKRRSGDTEPSSFQV 1994
GHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATS+EAFDGVW DVEDLVKGTDCEEYIL FLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQ SLGKGYVENDVKKSMEKVMTAYAEVGASKYA EEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRS NDS T+ GTT L CV C+ + L K K + V H I+ G GF G VLAALVTRLKRSDEFKGQSIH RWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWEPSGDFEDLQGDNTSVSVLSVLRGRAFANLTELCNRAVRTYTDSMTRDSTTADQSMFGDLMRHVNDFVEKRRSGDTE SSFQV
Sbjct: 141 GHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATSIEAFDGVWTDVEDLVKGTDCEEYILKFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRK---VGHLVIVGPG--------------------------------GFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWEPSGDFEDLQGDNTSVSVLSVLRGRAFANLTELCNRAVRTYTDSMTRDSTTADQSMFGDLMRHVNDFVEKRRSGDTEESSFQV 615
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 252 bits (644), Expect = 2.450e-67 Identity = 172/455 (37.80%), Postives = 240/455 (52.75%), Query Frame = 3
Query: 576 PKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATSVEAFDGVWKDVEDLVKGTDCEEYILNFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQ-------------------------------------------------------ATKQASLGKGYVENDVKKSMEKVMTAYAEVGASKYATEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSAN-------------DSTIQRTLVGTTMELATCVAKCLKRSLRKMKLQIRLCLVPHPCILSAGSSSALKLIASSRSCTNTSLTARWATLSS*DPVGFSFARAYNY*DGGCSVGIVLAALVTRLKRSDEFKGQSIHLRWR-SSVEPWSIAEVKLGTFDGDGDGSYDGGF 1733
P+VIITD+DAAM S+ + P HT HL SWHI KN+K+KC E AD++RR+T AS ATS++AF+ +W +++++V+GT CEEYI +L+++RKHWARC HPT MTL MT+SQRVEG+FSV+K G +R+NSTF VR + E +A +L LAS M +TK SL ++E+DVKK++E VM Y + GAS YA EI AEM+AS +YDT+++ +GR+S +FL++LA + +N D + T+M TC+ + LV H I + +K++ R + L P GF G VLAALVT L R+ EFKG+ IH RWR +SV+ WS+ +V+LG+FD +G SY G F
Sbjct: 930 PQVIITDADAAMTSSVAELMP--HTKHLYSSWHISKNLKRKC----GGEVFADVIRRYTAASFATSMKAFERIWNNLKEVVEGTPCEEYINGYLFDQRKHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRMWVSRGVKARVALYHIFILIHCIGMYGLLRGVSHTVEPASFTITSITAVRCLSPCRLSTKAGSLRFAHMEDDVKKAIEPVMKEYEKAGASTYARREIMAEMVASDSYDTTVLVKGRESKRFLEDLAAQPSNNDGNGDVCCQVPADVFDGKKHPDTSMFGTTCLQSFYR-------------LVAHVDIYMGD--AVVKVVYKRR---------KVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSYKGRF 1354
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 223 bits (568), Expect = 2.260e-59 Identity = 175/529 (33.08%), Postives = 256/529 (48.39%), Query Frame = 3
Query: 570 GHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATSVEAFDGVWKDVEDLVKGTDCEEYILNFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQASLGKGYVENDVKKSMEKVMTAYAEVGASKYATEEIWAEMLASSAYDTSIVTEGRDS----MQFLQNLATRS-----------------ANDSTIQRTLVGTTMELATCVAKCLKRSLRKMKLQIRLCLVPHPCILSAGSSSALKLIASSRSCTNTSLTARWATLSS*DPVGFSFARAYNY*DGGCSVGIVLAALVTRLKRSDEFKGQSIHLRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWEPSGDFEDLQGDNTSVSVLSVLRGRAFANLTELCNRAVRTYTDSMTRDSTTADQSMFGDLMRHVNDFVEKRRSGDTEPSSFQ-VKDPPIT--RCRKQTRTKDCLEKAGKAKKVKTE 2084
G P+VIITD+DA M ++ F P T HL C WH+ KN++K C L +K + R A+ A + EA W ++ VKG+DCEEY+ L +HW+RCF PT MTL+MT++QRVEG FSVLKKGR++ R + +V+A+ E+ LAS + +TK SLG+ ++++ V K+ E V +VGAS YA E+ AEM AS+AYDT+++T+ + L LA R ++D I T+ GTT A+ ++ + +Q++ +P G S + ++ P GF G V AALVTRL R+ +F G SIH RWR SV WS+ V LGTFDG ++ GGFT D+ GDF+ D + SV + R +A+ + + + + T D T A + ++ V+ G + +PPI RK+TR KD G K K++
Sbjct: 198 GQPEVIITDADAGMTHAVE-TFLPSTTVHLYCLWHVMKNVRKNCARAL-GKKASRFYRLLHAAAFAATEEACSDAWSEIFRHVKGSDCEEYVTGHLLRHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTEGYCADVPAEAFEGSHDPDI--TMYGTTS--LPSFAELVRNVGIEAVVQVQ---YKYPRTARRGKVSHIVVVG---------------------PKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHE--TFTGGFTEDFG-GGDFDGDSQDTLNTSV-AYTRKKAYVDYIAMAQQWANQA--AATLDGTPAAYQAYCAMVERQRHEVQALLRGPGPSDGLAGLGNPPIALPNDRKETRHKDAAGTEGGRPKKKSK 690
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.460e-21 Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 2
Query: 1280 LNDSTNVSGHDHGTGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRH 1573
L D T + G GDVCC+VP+E F+ + P+T FG L SF RLV V+ID VKV YK++ V HLVV+GP FQ+CTCLQ++RRG QCRH
Sbjct: 32 LEDLTAHPSNRDGNGDVCCEVPREAFDGKDNPETK-FGAICLQSFFRLVANVKIDAGVKVSYKYRSPT-VSHLVVLGPDRFQMCTCLQVMRRGWQCRH 127
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.050e-17 Identity = 112/430 (26.05%), Postives = 182/430 (42.33%), Query Frame = 3
Query: 576 PKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKS-EKCADLLRRWTRASLATSVEAFDGVWKDVEDLVKGTDCEEYILNFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQASLGKGYVENDVKKSMEKVMTAYAEVGASKYATEEIWAEMLASSAYDTSIVTEGR-------------------DSMQFLQNLATRSANDSTIQRTLVGTTMELATCVAKCLKRSLRKMKLQIRLCLVPHPCILSAGSSSALKLIASSRSCTNTSLTARWATLSS*DPVGFSFARAYNY*DGGCSVGIVLAALVT----RLKR---SDEFKGQSIHLRWRSSV----EPWSIAEVKLGTFDGDG-DGSYDGGFTGDWEPSGDFED 1769
PKV++TD+D AM ++ T HL C WH+ KN+ K C S E+ A +LR + A+ A + EAF D+E +VKG CEEY+ + ++ K WA PT++T+ M ++QR EG F V K+ V ++ S + K + + ++ + + AT+ + ++ + VGAS+Y E AE+ S +YD ++ G ++++F +L + D+ +++ + +T + R+ + L + L H ++ KL AR + P GF G A LV R K F G S+H RWR S+ EPW+++ V T GDG DG +G W P+ D +D
Sbjct: 42 PKVMLTDADRAMTSALEEWTT---TLHLFCLWHVFKNVLKNCSSSFPDKEERAKMLRLFRSAAYAATPEAFARYRVDLEKIVKGKKCEEYMDALIQDKTK-WAFSCRPTLLTMGMVATQRTEGMFGVAKRSGVHKKLSLC-GLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQVEARAEVGGSQSYDVEVICAGATDDDGRPDPLGEGVLRRKLEAVRFDLSLFEEAKPDTDLEKDCMRGPEAESTEDSSVWARTSLEALLDLIGELPVH-----VAAAVRYKLTP-----------ARPGHVVVFGPNGFHLCSCLKLLRHGLVCRHYFAVLVRFLGCRFKGILLDHRFDGNSLHARWRQSLDGNDEPWTVSRVLKETGHGDGWDGCEEGADDNFWGPTFDDDD 450
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.350e-16 Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 2
Query: 1319 TGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDR---KVGHLVVVGPGGFQLCTCLQLLRRGLQCRH 1573
T C VP E FE PD TM+GTTSL SF LV V I+ +V+V YK+ KV H+VVVGP GFQLCTCL+L+R GL C H
Sbjct: 782 TEGYCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSH 869
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5KRH9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH9_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.300e-9 Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 2
Query: 1358 EEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRH 1573
E + D T++ TSL + LV V + V YK P R GH+VV GPGGF LC+CL+LLR GLQCRH
Sbjct: 686 EAESTEDNTVWARTSLEALLHLVSRVPVHLSAAVRYKLTPSRP-GHVVVFGPGGFYLCSCLKLLRHGLQCRH 756
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.440e-9 Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 2
Query: 1364 DEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRH 1573
+ A D TM+ TSL + L+E + I+ +V V YK P+R HLVV GP LC+CLQLLRRGL CRH
Sbjct: 266 EAAVDNTMWAPTSLSASLDLIEDIPIELVVAVRYKWTPNRP-SHLVVFGPHNLHLCSCLQLLRRGLPCRH 334
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 8.200e-9 Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 2
Query: 1364 DEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRH 1573
+ A D TM+ TSL +F L+E + I+ +V V YK +R HLVV GP F LC+CLQLLRR L CRH
Sbjct: 917 EAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRP-SHLVVFGPHNFHLCSCLQLLRRRLPCRH 985
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.010e-8 Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 2
Query: 1364 DEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRH 1573
+ A D TM+ TSL +F L+E + I+ V V YK +R HLVV G F LC+CLQLLRRGL CRH
Sbjct: 230 EAAVDNTMWARTSLSAFLDLIEDIPIELFVAVRYKRAANRP-SHLVVFGLHNFHLCSCLQLLRRGLPCRH 298 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.290.1 >prot_P-fluviatile_contig1.290.1 ID=prot_P-fluviatile_contig1.290.1|Name=mRNA_P-fluviatile_contig1.290.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=363bp MPDEQVQLQIVFVRGRGLRKQDAGFRARFLQQRINRSVRFRQQVLPRHLRback to top mRNA from alignment at P-fluviatile_contig1:3558771..3567736+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.290.1 ID=mRNA_P-fluviatile_contig1.290.1|Name=mRNA_P-fluviatile_contig1.290.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=8966bp|location=Sequence derived from alignment at P-fluviatile_contig1:3558771..3567736+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:3558771..3567736+ >mRNA_P-fluviatile_contig1.290.1 ID=mRNA_P-fluviatile_contig1.290.1|Name=mRNA_P-fluviatile_contig1.290.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2178bp|location=Sequence derived from alignment at P-fluviatile_contig1:3558771..3567736+ (Porterinema fluviatile SAG_2381)back to top |