mRNA_P-fluviatile_contig1.289.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.289.1
Unique NamemRNA_P-fluviatile_contig1.289.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3550908..3551895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size464
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.3453596-CDS-P-fluviatile_contig1:3550908..35511401622815266.3453596-CDS-P-fluviatile_contig1:3550908..3551140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3550909..3551140 -
1693561299.2757602-CDS-P-fluviatile_contig1:3550908..35511401693561299.2757602-CDS-P-fluviatile_contig1:3550908..3551140Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3550909..3551140 -
1622815266.3579223-CDS-P-fluviatile_contig1:3551665..35518951622815266.3579223-CDS-P-fluviatile_contig1:3551665..3551895Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3551666..3551895 -
1693561299.2852619-CDS-P-fluviatile_contig1:3551665..35518951693561299.2852619-CDS-P-fluviatile_contig1:3551665..3551895Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3551666..3551895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.289.1prot_P-fluviatile_contig1.289.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3550909..3551895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.289.1

>prot_P-fluviatile_contig1.289.1 ID=prot_P-fluviatile_contig1.289.1|Name=mRNA_P-fluviatile_contig1.289.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=154bp
IISRAAQAPDRRERQGITKYGLLCLQKPSFGSRGPKLGEIGPTMTTGHTA
EAHPPAPAPAPAPAPAPKDLPPLPRKSVISEYEARIRLNNVAEHCRKVLR
TRKKASGVDGASAQPELKTPLAVATDFVTTNCTWKQVFDAPVGVLPLPPG
REAE
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mRNA from alignment at P-fluviatile_contig1:3550908..3551895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.289.1 ID=mRNA_P-fluviatile_contig1.289.1|Name=mRNA_P-fluviatile_contig1.289.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=988bp|location=Sequence derived from alignment at P-fluviatile_contig1:3550908..3551895- (Porterinema fluviatile SAG_2381)
ATCATCTCCCGAGCAGCACAGGCACCTGATCGTCGCGAAAGGCAAGGAAT
CACAAAGTACGGCCTTCTGTGCCTACAGAAACCAAGTTTCGGCTCCCGAG
GCCCCAAACTCGGCGAGATCGGCCCGACCATGACCACAGGACATACAGCA
GAAGCACACCCGCCAGCACCGGCACCGGCACCGGCACCAGCACCAGCACC
CAAGGATCTACCGCCTCTACCAAGGAAAAGGTGGCTTTGGTGTTCCCCCC
TGTCGCGTGGTTGTGTTGGAGGGCTTGTGTTGGAGCCTTTGTTGTTGCAA
AAAACAAATTGTGAGACACAGAAACACATGAATCAAATTTCAAATTTCCC
GCGTACCGAAGCTTGGCATCCGCTCATGTACATTCCCACAACTTTCCCTT
CCTGCTGTGAGGTACTACTAATCCAGGCACAGCGAATCCCCACTTTTTGT
CACCATTGACTCGCATGTTGTTCTCCGGACGGTTTCGCGCCGTTAGCGGT
CGAGAAAAAAGCGCCAACTATTTTTTTGTTTTTTTTCCTTCTCCCATTAG
ACTTTATATTGTACATGTAGTCTACATGTGTTTCTGTCGTCTGCCACTGG
CCCCCATCCTCCACTACGACTAGCTAGACGACCCACCCGGGGTCACACAG
GAGGGGGGGGTTGGACCCACTATGCCCGACGATGACTAATTGTGCGAAAC
GAAATTCCCATGCGCTCTCGTTGCCGCCGCTGCCGTTTTTTTGTCATCTC
CCTAGTGTCATCTCGGAATACGAGGCGCGTATACGGCTGAACAATGTCGC
CGAGCATTGCAGGAAAGTCTTGCGCACGAGAAAGAAGGCGTCGGGGGTAG
ACGGAGCATCGGCACAGCCTGAGTTGAAGACCCCGTTGGCCGTGGCGACA
GACTTTGTCACCACGAACTGCACGTGGAAACAAGTGTTCGATGCACCTGT
TGGAGTGCTGCCGCTTCCACCGGGTAGAGAGGCAGAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3550908..3551895-

>mRNA_P-fluviatile_contig1.289.1 ID=mRNA_P-fluviatile_contig1.289.1|Name=mRNA_P-fluviatile_contig1.289.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=924bp|location=Sequence derived from alignment at P-fluviatile_contig1:3550908..3551895- (Porterinema fluviatile SAG_2381)
ATCATCTCCCGAGCAGCACAGGCACCTGATCGTCGCGAAAGGCAAGGAAT
CACAAAGTACGGCCTTCTGTGCCTACAGAAACCAAGTTTCGGCTCCCGAG
GCCCCAAACTCGGCGAGATCGGCCCGACCATGACCACAGGACATACAGCA
GAAGCACACCCGCCAGCACCGGCACCGGCACCGGCACCAGCACCAGCACC
CAAGGATCTACCGCCTCTACCAAGGAAAAGATCATCTCCCGAGCAGCACA
GGCACCTGATCGTCGCGAAAGGCAAGGAATCACAAAGTACGGCCTTCTGT
GCCTACAGAAACCAAGTTTCGGCTCCCGAGGCCCCAAACTCGGCGAGATC
GGCCCGACCATGACCACAGGACATACAGCAGAAGCACACCCGCCAGCACC
GGCACCGGCACCGGCACCAGCACCAGCACCCAAGGATCTACCGCCTCTAC
CAAGGAAAAGTGTCATCTCGGAATACGAGGCGCGTATACGGCTGAACAAT
GTCGCCGAGCATTGCAGGAAAGTCTTGCGCACGAGAAAGAAGGCGTCGGG
GGTAGACGGAGCATCGGCACAGCCTGAGTTGAAGACCCCGTTGGCCGTGG
CGACAGACTTTGTCACCACGAACTGCACGTGGAAACAAGTGTTCGATGCA
CCTGTTGGAGTGCTGCCGCTTCCACCGGGTAGAGAGGCAGAGTGTCATCT
CGGAATACGAGGCGCGTATACGGCTGAACAATGTCGCCGAGCATTGCAGG
AAAGTCTTGCGCACGAGAAAGAAGGCGTCGGGGGTAGACGGAGCATCGGC
ACAGCCTGAGTTGAAGACCCCGTTGGCCGTGGCGACAGACTTTGTCACCA
CGAACTGCACGTGGAAACAAGTGTTCGATGCACCTGTTGGAGTGCTGCCG
CTTCCACCGGGTAGAGAGGCAGAG
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