mRNA_P-fluviatile_contig1.287.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.287.1
Unique NamemRNA_P-fluviatile_contig1.287.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.287.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.430e-55
Identity = 107/151 (70.86%), Postives = 111/151 (73.51%), Query Frame = 1 
Query:    1 CLAFVPSWTATFRSSRLQPPPSTPAAAMCSLSQPSGATYPVFGACGTCGAQIFYPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKE 453
            CLAFVPSWTATFRSSR QPP STPAAA  SLSQPSG   PVFGAC TCGAQ FYPV G+TSLSAMSEG EEEGGGDH AREAAD  PAADEIRAVQ                        D IEAAIAGGS+YLGMTDPEALLKQL R++E
Sbjct:   18 CLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEE 168
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BLAST of mRNA_P-fluviatile_contig1.287.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 5.460e-55
Identity = 116/150 (77.33%), Postives = 124/150 (82.67%), Query Frame = 1 
Query:  154 IFYPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKEXXXXXXXXXX-----------------ELLLKKEDRLSRIEQLRANNAPA 552
            +FYPVRG+T LSAMSEGDEEEGGGDH AREAADR+PAADEIRAVQD+IR VERKIEDAEEETAEVVKKIDDIEAAIAGG++YLGMTDPEALLKQL + + XXXXXXXXXX                 ELLLK EDRLSR EQ RANNAPA
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-fluviatile_contig1.287.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.620e-54
Identity = 116/140 (82.86%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:  175 ITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKEXXXXXXXXXX------------ELLLKKEDRLSRIEQLRANNAPAGS 558
            +TSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIR VERK EDAE+ETAEVVKKIDDIEAAIAGGS+YLGMTDPEALLKQL R++E XXXXXXXXX            ELLLKKEDR SRIEQLRANNAPA +
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPAAN 140
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BLAST of mRNA_P-fluviatile_contig1.287.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 7.050e-41
Identity = 96/144 (66.67%), Postives = 100/144 (69.44%), Query Frame = 1 
Query:  175 ITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIED-------AEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKEXXXXXXXXXXE----------LLLKKEDRLSRIEQLRANNAPAG 555
            +TS SAMSEGDEEEGGGDHDAREAAD  PAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGSKYLGMTDPEALLKQL R++E         X           +LLKKEDRLSRIEQLRANNAPAG
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAG 144
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BLAST of mRNA_P-fluviatile_contig1.287.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.160e-29
Identity = 87/139 (62.59%), Postives = 95/139 (68.35%), Query Frame = 1 
Query:  154 IFYPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAA-IAGGSKYLGMTDPEALLKQLRR---EKEXXXXXXXXXXELLLKKEDRLSRIEQLRANNAPAGS 558
            + YPVRGITSLSA+SEG+EE+GGGDHD REAA   PAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK+  R      XXXXXXXXXX  +L KE RL  IEQ RANNAPAG+
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGT 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI1.430e-5570.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI5.460e-5577.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI1.620e-5482.86Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI7.050e-4166.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI8.160e-2962.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3534880..3535865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size611
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815317.2132103-CDS-P-fluviatile_contig1:3534879..35354321622815317.2132103-CDS-P-fluviatile_contig1:3534879..3535432Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3534880..3535432 +
1693561484.7641025-CDS-P-fluviatile_contig1:3534879..35354321693561484.7641025-CDS-P-fluviatile_contig1:3534879..3535432Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3534880..3535432 +
1622815317.2243092-CDS-P-fluviatile_contig1:3535809..35358651622815317.2243092-CDS-P-fluviatile_contig1:3535809..3535865Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3535810..3535865 +
1693561484.7716687-CDS-P-fluviatile_contig1:3535809..35358651693561484.7716687-CDS-P-fluviatile_contig1:3535809..3535865Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3535810..3535865 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.287.1prot_P-fluviatile_contig1.287.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3534880..3535865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.287.1

>prot_P-fluviatile_contig1.287.1 ID=prot_P-fluviatile_contig1.287.1|Name=mRNA_P-fluviatile_contig1.287.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=203bp
CLAFVPSWTATFRSSRLQPPPSTPAAAMCSLSQPSGATYPVFGACGTCGA
QIFYPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIR
RVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREK
EQLRREKEQLRELLLKKEDRLSRIEQLRANNAPAGSHRRGGVDPLLCCLP
VIF
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mRNA from alignment at P-fluviatile_contig1:3534880..3535865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.287.1 ID=mRNA_P-fluviatile_contig1.287.1|Name=mRNA_P-fluviatile_contig1.287.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=986bp|location=Sequence derived from alignment at P-fluviatile_contig1:3534880..3535865+ (Porterinema fluviatile SAG_2381)
TGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCACGCTT
GCAGCCCCCTCCTTCCACGCCTGCGGCGGCGATGTGTTCGCTCTCGCAGC
CCTCTGGTGCGACCTACCCTGTGTTCGGGGCTTGTGGCACTTGTGGGGCG
CAAATTTTTTACCCGGTGCGAGGGATAACGAGCTTGAGCGCGATGAGCGA
GGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCG
ATCGCATTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGACATCCGT
CGTGTAGAGCGCAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGT
CAAGAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAAGTACC
TCGGAATGACCGACCCCGAAGCCCTCTTGAAGCAACTACGAAGGGAGAAG
GAGCAACTACGAAGGGAGAAGGAGCAACTCCGCGAGCTCCTTTTGAAGAA
GGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCCCCG
CAGGTATAGAAGCGTCCTATTCTATGTGGAGATCCACAACAGTGTACAGA
TTAGGGGATGCAGGTCGCCCGCTATAAAAGCAGACCATTTGAAACAATTC
GAGGAGTTCCTTGTGGCTGGTACATTGTGGTGCTGTCGTTTTGCACGGTC
AATTCGCCTCCTCTTTTTAAGCAACCTGCTGACGTTTTAGTAGATCTACG
CTCCTCAGCAACTACAGTACGTGCGACGTTTTCTTGTCCCACCTGGCTGC
AGAACGCTGTGACAAGTCCTCCTCTGCTACACCAGGAAATACTCCTACAT
TATTCCTCCCACTATTGGATATTGTTGTCTGCCCCACTGGCCCCCATCCT
CCACCTCGATTAGCTAGACGACCCAACCAGGGTCACACAGGAGGGGGGGT
GTGGACCCCCTCCTGTGTTGCCTGCCTGTTATTTTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3534880..3535865+

>mRNA_P-fluviatile_contig1.287.1 ID=mRNA_P-fluviatile_contig1.287.1|Name=mRNA_P-fluviatile_contig1.287.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1218bp|location=Sequence derived from alignment at P-fluviatile_contig1:3534880..3535865+ (Porterinema fluviatile SAG_2381)
TGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCACGCTT
GCAGCCCCCTCCTTCCACGCCTGCGGCGGCGATGTGTTCGCTCTCGCAGC
CCTCTGGTGCGACCTACCCTGTGTTCGGGGCTTGTGGCACTTGTGGGGCG
CAAATTTTTTACCCGGTGCGAGGGATAACGAGCTTGAGCGCGATGAGCGA
GGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCG
ATCGCATTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGACATCCGT
CGTGTAGAGCGCAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGT
CAAGAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAAGTACC
TCGGAATGACCGACCCCGAAGCCCTCTTGAAGCAACTACGAAGGGAGAAG
GAGCAACTACGAAGGGAGAAGGAGCAACTCCGCGAGCTCCTTTTGAAGAA
GGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCCCCG
CAGTGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCACG
CTTGCAGCCCCCTCCTTCCACGCCTGCGGCGGCGATGTGTTCGCTCTCGC
AGCCCTCTGGTGCGACCTACCCTGTGTTCGGGGCTTGTGGCACTTGTGGG
GCGCAAATTTTTTACCCGGTGCGAGGGATAACGAGCTTGAGCGCGATGAG
CGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTG
CCGATCGCATTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGACATC
CGTCGTGTAGAGCGCAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGT
TGTCAAGAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAAGT
ACCTCGGAATGACCGACCCCGAAGCCCTCTTGAAGCAACTACGAAGGGAG
AAGGAGCAACTACGAAGGGAGAAGGAGCAACTCCGCGAGCTCCTTTTGAA
GAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCC
CCGCAGGGTCACACAGGAGGGGGGGTGTGGACCCCCTCCTGTGTTGCCTG
CCTGTTATTTTTGGTCACACAGGAGGGGGGGTGTGGACCCCCTCCTGTGT
TGCCTGCCTGTTATTTTT
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