mRNA_P-fluviatile_contig1.285.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.285.1
Unique NamemRNA_P-fluviatile_contig1.285.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.285.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.860e-56
Identity = 123/150 (82.00%), Postives = 131/150 (87.33%), Query Frame = 1 
Query:    1 IFYPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKEXXXXXXXXXXXXXXXXX----------ELLLKKEDRLSRIEQLRANNAPA 420
            +FYPVRG+T LSAMSEGDEEEGGGDH AREAADR+PAADEIRAVQD+IR VERKIEDAEEETAEVVKKIDDIEAAIAGG++YLGMTDPEALLKQL + + XXXXXXXXXXXXXXXXX          ELLLK EDRLSR EQ RANNAPA
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQLEQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_P-fluviatile_contig1.285.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 5.520e-56
Identity = 122/140 (87.14%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:   22 ITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKEXXXXXXXXXXXXXXXXXELLL-----KKEDRLSRIEQLRANNAPAGS 426
            +TSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIR VERK EDAE+ETAEVVKKIDDIEAAIAGGS+YLGMTDPEALLKQL R++E XXXXXXXXXXXXXXX ELLL     KKEDR SRIEQLRANNAPA +
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPAAN 140
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BLAST of mRNA_P-fluviatile_contig1.285.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.630e-42
Identity = 103/144 (71.53%), Postives = 107/144 (74.31%), Query Frame = 1 
Query:   22 ITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIED-------AEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKEXXXXXXXXXXXXXXXXXE---LLLKKEDRLSRIEQLRANNAPAG 423
            +TS SAMSEGDEEEGGGDHDAREAAD  PAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGSKYLGMTDPEALLKQL R++E         XXXXXXXX    +LLKKEDRLSRIEQLRANNAPAG
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAG 144
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BLAST of mRNA_P-fluviatile_contig1.285.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.070e-31
Identity = 93/141 (65.96%), Postives = 99/141 (70.21%), Query Frame = 1 
Query:    7 YPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAA-IAGGSKYLGMTDPEALLKQLRREKEXXXXXXXXXXXXXXXXXELLLKKEDRLSRIEQLRANNAPAGS 426
            YPVRGITSLSA+SEG+EE+GGGDHD REAA   PAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK    EKE   XXXXXXXXXXXXXX  +L KE RL  IEQ RANNAPAG+
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLK----EKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGT 139
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BLAST of mRNA_P-fluviatile_contig1.285.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.440e-26
Identity = 64/99 (64.65%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    4 FYPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRRVERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKE 300
            FYPV G+TSLSAMSEG EEEGGGDH AREAAD  PAADEIRAVQ                        D IEAAIAGGS+YLGMTDPEALLKQL R++E
Sbjct:   70 FYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEE 168
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPP1_ECTSI1.860e-5682.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI5.520e-5687.14Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI2.630e-4271.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI6.070e-3165.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI4.440e-2664.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3519830..3520683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002570.1
Exons2
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815317.1008947-CDS-P-fluviatile_contig1:3519829..35198851622815317.1008947-CDS-P-fluviatile_contig1:3519829..3519885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3519830..3519885 -
1693561484.7102482-CDS-P-fluviatile_contig1:3519829..35198851693561484.7102482-CDS-P-fluviatile_contig1:3519829..3519885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3519830..3519885 -
1622815317.113151-CDS-P-fluviatile_contig1:3520262..35206831622815317.113151-CDS-P-fluviatile_contig1:3520262..3520683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3520263..3520683 -
1693561484.7231512-CDS-P-fluviatile_contig1:3520262..35206831693561484.7231512-CDS-P-fluviatile_contig1:3520262..3520683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3520263..3520683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.285.1prot_P-fluviatile_contig1.285.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3519830..3520683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.285.1

>prot_P-fluviatile_contig1.285.1 ID=prot_P-fluviatile_contig1.285.1|Name=mRNA_P-fluviatile_contig1.285.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=159bp
IFYPVRGITSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRR
VERKIEDAEEETAEVVKKIDDIEAAIAGGSKYLGMTDPEALLKQLRREKE
QLRRKEEQLRRKEEQLRELLLKKEDRLSRIEQLRANNAPAGSHRRGGVDP
LLWCLPVIF
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mRNA from alignment at P-fluviatile_contig1:3519830..3520683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.285.1 ID=mRNA_P-fluviatile_contig1.285.1|Name=mRNA_P-fluviatile_contig1.285.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=854bp|location=Sequence derived from alignment at P-fluviatile_contig1:3519830..3520683- (Porterinema fluviatile SAG_2381)
ATTTTTTACCCGGTGCGAGGGATAACGAGCTTGAGCGCGATGAGCGAGGG
CGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATC
GCATTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGACATCCGTCGT
GTAGAGCGCAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAA
GAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAAGTACCTCG
GAATGACCGACCCCGAAGCCCTCTTGAAGCAACTACGAAGGGAGAAGGAG
CAACTACGAAGGAAGGAGGAGCAACTACGAAGGAAGGAGGAGCAACTCCG
CGAGCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCC
GTGCCAACAACGCCCCCGCAGGTATAGAAGCGTCCTATTCTATGTGGAGA
TCCACAACAGTGTACAGATTAGGGGATGCAGGTCGCCCGCTATAAAAGCA
GACCATTTGAAACAATTCGAGGAGTTCCTTGTGGCTGGTACATTGTAGTG
CTGTCGTTTTGCACGGTCAATTCGCCTCCTCTTTTTAAGCAACCTGCTGA
CGTTTTAGTAGATCTACGCTCCTCAGCAACTACAGTACGTGCGACGTTTT
CTTGTCCCACCTGGCTGCAGAACGCTGTGACAAGTCCTCCTCTGCTACAC
CAGGAAATACTCCTACATTATTCCTCCCATTATTGGATATTGTTGTCTGC
CCCACTGGCCCCCATCCTCCACCTCGATTAGCTAGACGACCCAACCAGGG
TCACACAGGAGGGGGGGTGTGGACCCCCTCCTGTGGTGCCTGCCTGTTAT
TTTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3519830..3520683-

>mRNA_P-fluviatile_contig1.285.1 ID=mRNA_P-fluviatile_contig1.285.1|Name=mRNA_P-fluviatile_contig1.285.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=954bp|location=Sequence derived from alignment at P-fluviatile_contig1:3519830..3520683- (Porterinema fluviatile SAG_2381)
ATTTTTTACCCGGTGCGAGGGATAACGAGCTTGAGCGCGATGAGCGAGGG
CGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATC
GCATTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGACATCCGTCGT
GTAGAGCGCAAGATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAA
GAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAAGTACCTCG
GAATGACCGACCCCGAAGCCCTCTTGAAGCAACTACGAAGGGAGAAGGAG
CAACTACGAAGGAAGGAGGAGCAACTACGAAGGAAGGAGGAGCAACTCCG
CGAGCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCC
GTGCCAACAACGCCCCCGCAGATTTTTTACCCGGTGCGAGGGATAACGAG
CTTGAGCGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATG
ATGCGCGAGAAGCTGCCGATCGCATTCCGGCGGCGGACGAGATCCGTGCG
GTCCAGGATGACATCCGTCGTGTAGAGCGCAAGATCGAGGATGCAGAGGA
GGAGACGGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTG
CTGGGGGCTCCAAGTACCTCGGAATGACCGACCCCGAAGCCCTCTTGAAG
CAACTACGAAGGGAGAAGGAGCAACTACGAAGGAAGGAGGAGCAACTACG
AAGGAAGGAGGAGCAACTCCGCGAGCTCCTTTTGAAGAAGGAGGACCGGC
TCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCCCCGCAGGGTCACAC
AGGAGGGGGGGTGTGGACCCCCTCCTGTGGTGCCTGCCTGTTATTTTTGG
TCACACAGGAGGGGGGGTGTGGACCCCCTCCTGTGGTGCCTGCCTGTTAT
TTTT
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