mRNA_P-fluviatile_contig1.282.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.282.1
Unique NamemRNA_P-fluviatile_contig1.282.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: D8LJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.310e-31
Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 2
Query: 1256 GGYDDFQNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNGTQMKVYGDAAYPLLSHVRRGLKG 1522
            GG+DD Q E++DGHHR HG  YQAV+APNGML+DAWGPVSGRR D+YLL VSE NP LAA+QDP G QMKVYGDA    L+     L+G
Sbjct:  151 GGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQMKVYGDAPTRCLATCAGSLRG 239          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: A0A6H5J8N3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N3_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.750e-25
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 2
Query: 1238 QAFCRQGGYDDFQNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNG 1453
            + FCR  G+DD Q E++DGHHR HG VYQAV AP+ M+IDAWGPVSGRR D YLLRVSEL+P LAA+QDP+G
Sbjct:  179 RRFCRPDGHDDIQREVYDGHHRDHGLVYQAVQAPSAMIIDAWGPVSGRRHDLYLLRVSELSPRLAAVQDPDG 250          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: UPI001CF3474D (uncharacterized protein LOC114950185 isoform X3 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3474D)

HSP 1 Score: 112 bits (280), Expect = 5.710e-25
Identity = 65/170 (38.24%), Postives = 93/170 (54.71%), Query Frame = 2
Query: 1283 MWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSE--QQDEN*QRVEVRKG-GAVV---SVLRL*G*PKVVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEY 1774
            M+ GH R H   +Q+V+APNG++   +GP+ GRR DA++L  S L P L  +  PNG    VYGD AY +  H+        P+ GA   +P +    + N  R+ V  G G ++   + L      KV+L    +YY+   +L N +TCL GS TG YFD+ PP+LE Y
Sbjct:    1 MYSGHKRVHSLKFQSVMAPNGIIAHLFGPIEGRRHDAFMLGESNLLPLLDRMVKPNGDPYVVYGDPAYGITRHI------ISPFRGAHLTRPQQLFNAEMNKCRICVEWGFGKILQYFTYLDFQRNLKVLLQPVAKYYLVGALLINCHTCLYGSLTGTYFDLEPPSLETY 164          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: UPI00077A7035 (uncharacterized protein LOC107333236 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7035)

HSP 1 Score: 115 bits (287), Expect = 1.810e-24
Identity = 68/175 (38.86%), Postives = 94/175 (53.71%), Query Frame = 2
Query: 1274 QNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSEQQDEN*QRVEVR--------KGGAVVSVLRL*G*PKVVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEY 1774
            Q  M+ GH R H   +Q+V APNG++   +GP+ G+R DA++L VS L   L   Q PNG    +YGD AY L  ++        PY G       +QQ+ N Q  ++R        K   + + L      KV+L   G+YY+ A +L N +TCL GSQTG YF++ PPTLE Y
Sbjct:  132 QQIMYSGHKRTHCIKFQSVQAPNGLIAHMFGPIEGKRHDAFMLGVSGLADKLRRFQRPNGEPYVIYGDPAYGLSRNILA------PYRGVRLT--DDQQEFNSQMSKMRCCVEWGFGKISQLFAFLDFKKNLKVLLQPIGKYYLVAVILINCHTCLYGSQTGAYFNLDPPTLETY 298          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: UPI00077A71E6 (uncharacterized protein LOC107340903 n=3 Tax=Acropora TaxID=6127 RepID=UPI00077A71E6)

HSP 1 Score: 115 bits (287), Expect = 9.140e-24
Identity = 68/175 (38.86%), Postives = 98/175 (56.00%), Query Frame = 2
Query: 1274 QNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAA-LQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSEQQ---DEN*QRVEVRKG-GAVV---SVLRL*G*PKVVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEY 1774
            Q  M+ GH R H   +Q+V++PNGM+   +GPV GRR DA++L  S L P L   L  PNG    +YGD AYP+  H+    +G++       + P E++   D +  R+ V  G G +V   + L      KV+L   G+ Y+   +L N +TCL GSQTG +FD+ PP+LE Y
Sbjct:  221 QRIMFSGHKRVHCLKFQSVVSPNGMICHLFGPVEGRRHDAFMLAESGLLPKLERRLNKPNGEPYVIYGDPAYPVRRHILAPFRGAR-------LTPDEERFNKDMSTVRISVEWGYGKIVRYFAFLDFNKNLKVLLQPVGKMYVVGAILANCHTCLYGSQTGDFFDLDPPSLETY 388          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: UPI00077A99CC (uncharacterized protein LOC107345875 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A99CC)

HSP 1 Score: 112 bits (279), Expect = 9.270e-24
Identity = 63/172 (36.63%), Postives = 94/172 (54.65%), Query Frame = 2
Query: 1274 QNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSE-QQDEN*QRVEVRKGGAVV----SVLRL*G*PKVVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEY 1774
            Q  M+ GH R H   +Q++ APNG++   +GP+ GRR DA++L +S+L P L     PNG    +YGD AYP+  ++    +G        ++Q  E  +  +  RV V  G   +    + L      KV+L   G+YY+ A +L N +TCL GSQT  +F++ PPTLE Y
Sbjct:   95 QRIMFSGHKRTHCIKFQSIQAPNGLIAHMFGPIEGRRHDAFMLGMSDLLPKLQGFVQPNGQPYVIYGDPAYPITCNILAPFRGVNL-----TIQEQEFNRKMSKVRVNVEWGFGKICQNFAYLDFKKNLKVLLQPVGKYYLVATILINCHTCLYGSQTSSFFELEPPTLETY 261          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: UPI000A2A66BF (protein ALP1-like isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A66BF)

HSP 1 Score: 114 bits (285), Expect = 1.840e-23
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 2
Query: 1274 QNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSEQQDEN*Q----RVEVRKGGAVV----SVLRL*G*PKVVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEY 1774
            Q  M+ GH R H   +Q+V APNG++   +GP+ GRR DA++L  S L   L  LQ PNG    +YGD AY L  ++        P+ GA+     +QQ+ N +    RV V  G   +    + L      KV+L   G+YY+ A +LTN +TCL  SQTG YF++ PP+LE+Y
Sbjct:  228 QRIMYSGHKRVHCLKFQSVQAPNGLIAHLFGPIEGRRHDAFMLGESGLADKLRPLQRPNGEPYVIYGDPAYGLTRNILA------PFRGAQLTH--DQQEFNRRMSKLRVAVEWGFGKICQQFAFLDFKKNMKVLLQPVGKYYVVAALLTNCHTCLYNSQTGRYFELYPPSLEDY 394          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: A0A6S7L092_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7L092_PARCT)

HSP 1 Score: 108 bits (270), Expect = 1.410e-22
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 2
Query: 1274 QNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSEQQDEN*QRVEVR------KGGAVVSVLRL*G*PKVVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEY 1774
            Q  M+ GH R H   +Q+V APNG++++ +GP+ GRR DA++L VS +   L  +Q PNG    +YGD AY +  ++        P+ G +     ++ ++   +V V       K     + L      K++L    +YY+   +L N +TCL GSQT  YFD+ PP+LE Y
Sbjct:   93 QQIMFSGHKRTHCIKFQSVHAPNGLILNMFGPIEGRRHDAFMLGVSGIMDKLRRIQQPNGEPYVIYGDPAYGVTDNILA------PFRGVDLTVAQKEFNKRMSKVRVSVEWGFGKIAQYFAFLDFKKNQKILLQPIAKYYLVGSLLINCHTCLYGSQTSSYFDVQPPSLETY 259          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: A0A7M7HPI2_STRPU (DDE Tnp4 domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HPI2_STRPU)

HSP 1 Score: 111 bits (277), Expect = 1.560e-22
Identity = 67/186 (36.02%), Postives = 101/186 (54.30%), Query Frame = 2
Query: 1235 AQAFCRQGGYDDFQNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHL-AALQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSEQQDEN*QRVEVRKG-GAVVSVLRL*G*PK---VVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEYF 1777
             +  CR G   + Q   ++GH R H   YQ+V +PNGM+ + +GPV GRR DAYLLR S L   L     D  G  + +YGD AYP    VR  L+   P A     Q +  +  +  R+ V    G V++  +     K   ++L++  + Y+ + +LTNA+TC+ G+ T  YF++ PP+L+EYF
Sbjct:  204 VRPICRPG---EHQRVAYNGHKRVHSLKYQSVTSPNGMIANLYGPVEGRRHDAYLLRESGLLTMLEGGSHDAEGNLLCIYGDPAYP----VRPQLQAPFPTANITPEQAAFNRAMSKVRITVEWSFGDVINFFKYTDFKKSQKILLSSCAKMYMVSAILTNAHTCIYGNNTSSYFELQPPSLDEYF 382          
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Match: A0A6S7GNP4_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GNP4_PARCT)

HSP 1 Score: 110 bits (275), Expect = 2.070e-22
Identity = 65/173 (37.57%), Postives = 93/173 (53.76%), Query Frame = 2
Query: 1274 QNEMWDGHHRAHGQVYQAVIAPNGMLIDAWGPVSGRRQDAYLLRVSELNPHLAALQDPNGTQMKVYGDAAYPLLSHVRRGLKGSKPYAGAESVQPSEQ--QDEN*QRVEVRKGGAVVS----VLRL*G*PKVVLAARGQYYINACVLTNANTCLRGSQTGCYFDMVPPTLEEY 1774
            QN M+ GH R H   +Q+V+APNG++   +GP+ GRR DA++L VS L P L  +  PNG    VYGD AY +  H+        P+ GA   +P +Q  +D +  RV V  G   ++     L      KV+L    +YY    +L N +TCL GS    +F++ PP LE+Y
Sbjct:  192 QNVMYSGHKRIHCIKFQSVLAPNGLIAHLFGPIEGRRHDAFMLGVSGLLPLLERIIKPNGEPYVVYGDPAYGISRHI------ISPFKGAHLTEPQQQFNRDMSEVRVCVEWGFGKIAQYFAYLDFQKNLKVLLQPVAKYYAVGALLINCHTCLYGSVASSFFNLDPPLLEDY 358          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJH1_ECTSI3.310e-3167.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8N3_9PHAE1.750e-2570.83DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
UPI001CF3474D5.710e-2538.24uncharacterized protein LOC114950185 isoform X3 n=... [more]
UPI00077A70351.810e-2438.86uncharacterized protein LOC107333236 n=1 Tax=Acrop... [more]
UPI00077A71E69.140e-2438.86uncharacterized protein LOC107340903 n=3 Tax=Acrop... [more]
UPI00077A99CC9.270e-2436.63uncharacterized protein LOC107345875 n=1 Tax=Acrop... [more]
UPI000A2A66BF1.840e-2339.43protein ALP1-like isoform X1 n=2 Tax=Exaiptasia di... [more]
A0A6S7L092_PARCT1.410e-2234.10DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
A0A7M7HPI2_STRPU1.560e-2236.02DDE Tnp4 domain-containing protein n=2 Tax=Strongy... [more]
A0A6S7GNP4_PARCT2.070e-2237.57DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3435851..3440358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2490
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.282.1prot_P-fluviatile_contig1.282.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3437931..3439611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.4829235-UTR-P-fluviatile_contig1:3435850..34370581622815316.4829235-UTR-P-fluviatile_contig1:3435850..3437058Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3435851..3437058 -
1693561483.9156046-UTR-P-fluviatile_contig1:3435850..34370581693561483.9156046-UTR-P-fluviatile_contig1:3435850..3437058Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3435851..3437058 -
1622815316.4976244-UTR-P-fluviatile_contig1:3437848..34379301622815316.4976244-UTR-P-fluviatile_contig1:3437848..3437930Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3437849..3437930 -
1693561483.9258776-UTR-P-fluviatile_contig1:3437848..34379301693561483.9258776-UTR-P-fluviatile_contig1:3437848..3437930Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3437849..3437930 -
1622815316.545067-UTR-P-fluviatile_contig1:3439611..34403581622815316.545067-UTR-P-fluviatile_contig1:3439611..3440358Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3439612..3440358 -
1693561483.956247-UTR-P-fluviatile_contig1:3439611..34403581693561483.956247-UTR-P-fluviatile_contig1:3439611..3440358Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3439612..3440358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.5087805-CDS-P-fluviatile_contig1:3437930..34379481622815316.5087805-CDS-P-fluviatile_contig1:3437930..3437948Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3437931..3437948 -
1693561483.9333165-CDS-P-fluviatile_contig1:3437930..34379481693561483.9333165-CDS-P-fluviatile_contig1:3437930..3437948Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3437931..3437948 -
1622815316.5191605-CDS-P-fluviatile_contig1:3438481..34386621622815316.5191605-CDS-P-fluviatile_contig1:3438481..3438662Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3438482..3438662 -
1693561483.9410007-CDS-P-fluviatile_contig1:3438481..34386621693561483.9410007-CDS-P-fluviatile_contig1:3438481..3438662Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3438482..3438662 -
1622815316.5336902-CDS-P-fluviatile_contig1:3439357..34396111622815316.5336902-CDS-P-fluviatile_contig1:3439357..3439611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3439358..3439611 -
1693561483.9485087-CDS-P-fluviatile_contig1:3439357..34396111693561483.9485087-CDS-P-fluviatile_contig1:3439357..3439611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3439358..3439611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.282.1

>prot_P-fluviatile_contig1.282.1 ID=prot_P-fluviatile_contig1.282.1|Name=mRNA_P-fluviatile_contig1.282.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=151bp
MMPTSWRLGLLHSMWSREQLLAPRHVDRAPVLRLARSTASVDDCEAYHNF
HCLMPALGFPAVMKLENRSAFSWEEEFILRLMRLRYPGRLSDLERYFGRE
HPQLSRLFRRATDFVFDRHKHRVMDYLFTSGLRTSRLSLVQGIGKVAPLD
*
back to top

mRNA from alignment at P-fluviatile_contig1:3435851..3440358-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.282.1 ID=mRNA_P-fluviatile_contig1.282.1|Name=mRNA_P-fluviatile_contig1.282.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4508bp|location=Sequence derived from alignment at P-fluviatile_contig1:3435851..3440358- (Porterinema fluviatile SAG_2381)
AAACATGCACACTGCTCTCGACGAAGCAAGCACAGGTGGGCGATAGTCGT GGGAGGTCAGCTTTTGCAGTTGTTTGAAATTACGTGCGACAAACTTTGAG AAACCGTAGAAAACGGTTCTGTCAGCAGACGTCGGCACCGTTTAGCTGGA GCACAGCGTTGGTTGACTTCTAAAGACTAAAGGCACTGGACTCATCTACC TTTGCTGGCAGAAGGACCGAAGACCCGCGGCCACAAAATTTACACCTCCA TGTGATTCAGACGAGAAAGATTTTGCATTTCACAATTCACACACCGACCA ACACTACTTGCGGGATGCTTTTATTTCCTGCATTTTCATCACGGAGCCCC CAGGCACCGATTGCATTAGGGTGTTTGCGACGACCCAAATTTGGGTTTGG TCCAAGTGTCTTTTTTCTCCCCCGGGGCCCAACTCCGCTGGATCTTTAGG ACTCTGGGTCTTTCTCAAAGCTGAATTGCCCTCAAAGACCGCAGAGAATG ACCGCTCCGGACGTTCGGTTTTGTCTTTTGGAGATCGCCCGTGATTGGCC TGTAGGCCCGAACTCTTGTCGATGGAGCCCTCATACCGAAACACAACAAG GCAGACTTCCTTGCACGCAAGACCCGGTGCTCTGAACGCTGCGAGCATGG TAGAGCGACGTCGCTTGGACACCGCAATCCCCTTTTTCTTGCTCATGGGG ATGGGCGACGATGCCGCCCGGTGTGCGGCAGGGGAGGACGGAGCAAGATG ATGCCGACGTCATGGAGATTGGGTTTGCTGCATTCCATGTGGTCGCGGGA GCAGCTGCTCGCCCCGCGCCATGTTGACCGTGCTCCTGTTCTTCGGCTTG CGCGGAGTACTGCTTCGGTCGACGATTGTGAGGCGTATCACAACTTTCAT TGTCTGATGCCAGCTCTTGGGTTCCCAGCAGTGATGAAGCTGGAGAACAG ATCGGCCTTCAGCTGGGAGGAAGAGTTTATTCTTCGTCTCATGAGGTTGA GGTAGGTTGCGTTTTGCTGTGATATTACAATTTTGTCTTCTTCTGGGATG TGCTCGTGCCTTGGGACAGCATGACATGCACCCACACAGAATAAGAGTAG CGGAGTAGCGGGCTGCATCACCGCCCTCTGGGGGCTCATCTCCCTAGTTG CGCACCGCATTTGAGGGGTGAAGAGAGGGGGAGAGAGAAAGCGAGAGGGA GTGAGGGTTAGGTATTGGTGATCATGCAGCAGAACCTTAGCCACCTTGTG TGAGGGCTTGTTGCTTGTTCCTTTGAATTTTGAAACCTTGCACGTACAAG GCTCCCGGTAACACGGGACTGCAGTGACACCATGGCGATGCAGCCCCTGT CTTTTCGCTAAGTTCACACATGCCGCTGCTTGCTGATGGTGAAGGTTAAA GGTCCATGCTCAGGGTGAGATAGGAAGGTGCATAAATTGATCGCAGATTG TGGGACACACACCCACGTTAGACCTAGATATCCGGCGAGCAGCTGTGGTT CCTTTCCGTCGTCCACGCAGAGTTGAAATGACTAAGCGACTACCTACGTA CATCCTCCCGGAAGGAGGTAGTACAGCAGCAGTAGCAAATTTGCTTTCAT GGTTGACTCCAAACGGTACTGGCAGCGGGTGGGGTTTTGTTTGTCGTTTG TTGCCGCTCATGAACGCACACCCTGCGTTCTGTTGTGTCACTGCAGGTAT CCAGGACGCTTGTCCGATCTCGAGAGGTACTTCGGACGCGAGCACCCGCA GCTTTCCAGGCTCTTCCGACGGGCGACGGATTTCGTGTTCGACCGCCACA AACATCGCGTCATGGACTACCTTTTCACTTCTGGGCTCCGCACCTCCAGG CTCTCGCTCGTGCAGGGTATAGGAAAGGTGCGCGCTGTGGCACAGTGGAT GCATTGCGGCTTACCAGGTAGCATGTTCGGTAGAAATGGCACGAACCACC TGCCAGAGTGGGACTCCCGCCATTTTGATACTGAAATATGGTGAGGTCGT TGCAGGCTCGCCGCGTTTGCTAATAGCGGAAGCACGAGGCGCTCCTACTT CGAAGTCGTGTTATAGTAGAAGTGTAGAGTTGTCACAAGGAAAGGGTTGC GCATTGACCCCTCCATATTCCTTTCCCGCCGACGGCACAGATTCGCCGTC GGAATATCTTTTTTTTGTATTTTTGAAAGTGTGGCATTGGCAGGCGGTGT GGTACTTGATGTAATTAATTGGTGGGGCCTTCGTCGAAGGTGCTTCCGTA TGCCTCCTAGCGCCCGCCTTTGTATCCCTAACGGATTATCCGATTATCTT GTGTATTTGCTTTTGTAGTCTTTTCGTCCCCTTGCGTGAGGAAGATCGAT CTACTCCTCTCCGGTGTGATGTGTGATGCTGGTGTTCCGGCCCGTTTTTG TGCCCCACAGGTAGCGCCTTTGGACTAACTTACGCCGACATCTGTGGCTT CGTCGACGGAACGCTCAGGCTTTCTGCCGCCAGGGTGGATACGACGACTT CCAGAACGAGGTGCGTATATGCGTTGCCCGCACGGTTCCTCTCTCTCTTC CCTCCCTTCGCGTCGCGACAGACTCGTGCGTTGTGTTCTCTGCTAACGGC GCCTCGTTCAGATCTAGGGTTAGGGTTACGTGTGACGACGAACCCCATCC CCTCCCCGGTTGGTCGTCGTCCTATAGAGGCGTGCGCCTTGTCGTGGACG GTACGAGATAAGTTATGCAGGGACGCACCAGTTTCTTGCGCCCTGGTAGA GGTTTAGGAGGCTGCACGCCCTCGCCTCTTTCCCTCCCTTCGTACCAAAA GTTAGCGTGCGTGGTCCGTGGGCGGCGCGTGAGAGCCCAAGGTTTCTAGG CGTCTGTAGAGGTGTCCCCAGCTCTCCCCCTCGGCCTCTTCCTTTCCCGC TTTCCTCCCCTCCGTTCACAGGGAGAGCATCGATGTTTTTTTCGGGTAAT GGTGCACTGGTTCTCGGGTCATGGTGCACTGGACCGACCCTCCGAAAGCC CATGCATGAAGACGCCCCCCACCCCGTTTGGTCCTCGTCCTGAAGACATG TGGCTCTCTGTCATACTCGTTGTCCTCCTTAGTACGTATGTACGCCTGGG TGTACATTTATGTTCAACGCTGTCGGCTGTGTTGTCGTCGGTTCCACCCC CCGACTATACTCTCTTAGCAGAAACGGCAAATAGCCGTGCGCGGCGCCAG GTTAATTGCTTGAAGTGGGGCGTTGTTCGGCTACGGTAGGGAACAACCGA CCACGCTCACACTCACACACATCGACTGCTGCGTGTGCTCGTCTTTTCAG ATGTGGGATGGGCACCACAGGGCTCACGGTCAAGTCTACCAAGCAGTGAT CGCTCCGAATGGGATGCTGATCGACGCCTGGGGGCCTGTGTCGGGCCGGA GACAAGACGCGTACCTCTTGCGCGTCAGCGAGCTCAACCCTCATCTGGCG GCGCTACAGGACCCGAACGGCACACAAATGAAAGTGTACGGGGACGCTGC GTACCCATTGCTGAGCCACGTGCGGCGTGGCCTGAAGGGTTCTAAACCTT ACGCCGGAGCAGAGAGCGTTCAACCAAGCGAACAGCAAGATGAGAATTAG CAACGAGTGGAGGTGCGGAAAGGTGGTGCAGTTGTTTCCGTTCTGCGACT TTAGGGATAACCAAAAGTTGTTCTTGCAGCCCGTGGGCAGTACTATATCA ACGCATGCGTTCTTACGAACGCAAATACTTGCTTGCGCGGTTCACAGACC GGGTGCTACTTCGACATGGTACCACCCACGCTCGAGGAGTATTTTGGATG ACTTGCGATGTGTCTGCCGTTTGCTTTAATGGCAGTTCCAAAGCACGTGT CGCAGGCATAAGCCTTGCAGTCCCGCGCCGGCTTCGGCTTGGAGATCAAT GGAAATGGGGTTGGGGCCGGCGTTTTTTGTGGGTATTGTTGGTCGGACTT TCGTGGATGGCGGGGGGACCTGTTTCCGCGCCGAAAGGTGACACGGTCGT TTTCGCGATCCTCGAGGGTCGCCGAGAGGTGTGTAAAAAGTTTGTATATC CGGATGCGCTTTTGGTCTAATTATTTTCGTTTTTTTGTGGAGGTGAATTG CGATGCGAAAAAGCAGTTCCGGCGCACATGCCCTTCGCTTGCTCGTAATT GCCTAGAGTTAAATGCTCTTCGCCATCGATATCGCCGGCAAATGGTGTGT AATCGGAGAGCGACTGTCGGATGGAGCATTCGTTGAGTCCCGGGAGGTGC ATGGCGCCGAGTCTTGCGTGGACGAGGGAGAGGCGTGCGCTTGTTGACAG ATTGGTGTTTGGAGCACCCCGCTGCCACGTTGGCAGTAGTGGTGCGTACG CCCTCGACGAAAAAATGTGCTCAGACCTACTGAGAGGCTTTTCATCCTTT TATTAGGGTTTAGCCCATCCCGCCCCTTCGGAACGCCGTCGCGGGCGACG ACTCAAGACTGCCAGCGGCCAGAACATAATATGTGGTAGAAGAACAACAC TTGTTTAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:3435851..3440358-

>mRNA_P-fluviatile_contig1.282.1 ID=mRNA_P-fluviatile_contig1.282.1|Name=mRNA_P-fluviatile_contig1.282.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=906bp|location=Sequence derived from alignment at P-fluviatile_contig1:3435851..3440358- (Porterinema fluviatile SAG_2381)
ATGATGCCGACGTCATGGAGATTGGGTTTGCTGCATTCCATGTGGTCGCG
GGAGCAGCTGCTCGCCCCGCGCCATGTTGACCGTGCTCCTGTTCTTCGGC
TTGCGCGGAGTACTGCTTCGGTCGACGATTGTGAGGCGTATCACAACTTT
CATTGTCTGATGCCAGCTCTTGGGTTCCCAGCAGTGATGAAGCTGGAGAA
CAGATCGGCCTTCAGCTGGGAGGAAGAGTTTATTCTTCGTCTCATGAGGT
TGAGATGATGCCGACGTCATGGAGATTGGGTTTGCTGCATTCCATGTGGT
CGCGGGAGCAGCTGCTCGCCCCGCGCCATGTTGACCGTGCTCCTGTTCTT
CGGCTTGCGCGGAGTACTGCTTCGGTCGACGATTGTGAGGCGTATCACAA
CTTTCATTGTCTGATGCCAGCTCTTGGGTTCCCAGCAGTGATGAAGCTGG
AGAACAGATCGGCCTTCAGCTGGGAGGAAGAGTTTATTCTTCGTCTCATG
AGGTTGAGGTATCCAGGACGCTTGTCCGATCTCGAGAGGTACTTCGGACG
CGAGCACCCGCAGCTTTCCAGGCTCTTCCGACGGGCGACGGATTTCGTGT
TCGACCGCCACAAACATCGCGTCATGGACTACCTTTTCACTTCTGGGCTC
CGCACCTCCAGGCTCTCGCTCGTGCAGGGTATAGGAAAGGTATCCAGGAC
GCTTGTCCGATCTCGAGAGGTACTTCGGACGCGAGCACCCGCAGCTTTCC
AGGCTCTTCCGACGGGCGACGGATTTCGTGTTCGACCGCCACAAACATCG
CGTCATGGACTACCTTTTCACTTCTGGGCTCCGCACCTCCAGGCTCTCGC
TCGTGCAGGGTATAGGAAAGGTAGCGCCTTTGGACTAAGTAGCGCCTTTG
GACTAA
back to top