mRNA_P-fluviatile_contig1.28.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.28.1
Unique NamemRNA_P-fluviatile_contig1.28.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.28.1 vs. uniprot
Match: D7FS96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS96_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 7.790e-20
Identity = 42/51 (82.35%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:  280 EFIGLWADVESLNECEALPPEILEAHPEIRTFKAVFKDVMVERGPVRPPGG 432
            EF+GLW+DVESLNECEALPPEILEA+PEI+TFKAVF D++VE+GP RPPGG
Sbjct:   51 EFVGLWSDVESLNECEALPPEILEANPEIKTFKAVFGDLVVEKGPPRPPGG 101
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BLAST of mRNA_P-fluviatile_contig1.28.1 vs. uniprot
Match: A0A6H5KVS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.150e-16
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  280 EFIGLWADVESLNECEALPPEILEAHPEIRTFKAVFKDVMVERGPVRPPGG 432
            EF+GLW+DVESLNECEALPPEILEA+PEI+TFK VF  ++VE+G  RPPGG
Sbjct:   90 EFVGLWSDVESLNECEALPPEILEANPEIKTFKGVFGALVVEKGSPRPPGG 140
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BLAST of mRNA_P-fluviatile_contig1.28.1 vs. uniprot
Match: A0A7S0SV21_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SV21_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.000e-6
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  277 YEFIGLWADVESLNECEALPPEILEAHPEIRTFKAVFKDV 396
            YE+IG W  +E++NECE++P EILEA+P I+T    FK V
Sbjct:   71 YEYIGSWEQIETMNECESIPSEILEANPSIQTISKAFKSV 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS96_ECTSI7.790e-2082.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVS8_9PHAE1.150e-1676.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0SV21_9STRA7.000e-655.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:512822..515861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog2880.D7FS96
EggNOG OGs2E2F8@1,2SEB5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004840.1
Exons2
Model size2162
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.28.1prot_P-fluviatile_contig1.28.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 514522..515690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.978285-UTR-P-fluviatile_contig1:512821..5145211622815275.978285-UTR-P-fluviatile_contig1:512821..514521Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 512822..514521 -
1693561367.1132321-UTR-P-fluviatile_contig1:512821..5145211693561367.1132321-UTR-P-fluviatile_contig1:512821..514521Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 512822..514521 -
1622815276.0156338-UTR-P-fluviatile_contig1:515690..5158611622815276.0156338-UTR-P-fluviatile_contig1:515690..515861Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 515691..515861 -
1693561368.2994854-UTR-P-fluviatile_contig1:515690..5158611693561368.2994854-UTR-P-fluviatile_contig1:515690..515861Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 515691..515861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.994228-CDS-P-fluviatile_contig1:514521..5146411622815275.994228-CDS-P-fluviatile_contig1:514521..514641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 514522..514641 -
1693561367.9325302-CDS-P-fluviatile_contig1:514521..5146411693561367.9325302-CDS-P-fluviatile_contig1:514521..514641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 514522..514641 -
1622815276.0061498-CDS-P-fluviatile_contig1:515519..5156901622815276.0061498-CDS-P-fluviatile_contig1:515519..515690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 515520..515690 -
1693561368.289684-CDS-P-fluviatile_contig1:515519..5156901693561368.289684-CDS-P-fluviatile_contig1:515519..515690Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 515520..515690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.28.1

>prot_P-fluviatile_contig1.28.1 ID=prot_P-fluviatile_contig1.28.1|Name=mRNA_P-fluviatile_contig1.28.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=97bp
MERVDEFSPPLADIFAPSSGLPILLKQVFIERDDEYEFIGLWADVESLNE
CEALPPEILEAHPEIRTFKAVFKDVMVERGPVRPPGGVVAGPVMAL*
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mRNA from alignment at P-fluviatile_contig1:512822..515861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.28.1 ID=mRNA_P-fluviatile_contig1.28.1|Name=mRNA_P-fluviatile_contig1.28.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3040bp|location=Sequence derived from alignment at P-fluviatile_contig1:512822..515861- (Porterinema fluviatile SAG_2381)
GTTTCATCCCTTGTGTTGACGTTTTTGTCTTTCCGTCCGCCCTCACCCGT
CTTATTGTCCCGCAACAGGTTTCCATAAATCATGGTGGATCGGAATGATG
AGGGTTTCCCTCCTTTGAGTGACATTTCCGCTGCTCCGTCCGATCTTTTC
ATTGCCCCAAAATAGATTTTCATGGAGCGGGTTGATGAGTTTTCCCCCCC
TTTAGCTGACATTTTTGCTCCTTCGTCCGGCCTTCCCATTCTCCTTAAAC
AGGTTTTTATCGAGCGGGATGATGAGTACGAGTTCATCGGGCTGTGGGCG
GACGTGGAAAGTTTGAATGAGTGCGAGGCATTGCCGCCAGAGGTGAGCAG
GCCAACAAAGACGCCTCCCCCTTCCCTTTCCTTGGAAAGAAACAGACACG
ACAACAGAAAGCTCGCACCAGAAAGCTCACACGGCAAGGTTTTTCTAAGC
ATGCCTTGTATTTCGGTTTATTCATAGAGTGCGCAGCCTGAGTGAATCAT
TTTCATTCATTTTGTGGCTGATACGCGCCCAGAAGAACTTTGGGACGAGC
GGGTTGAAATTTCATTGGCAGGGAGACTTACGTGAGGCAGCAATGCTAGA
AGCCGTCGGCGCATTTTGCACATTTATCCACTCTCCCACACTGTCCGCCT
TTATCCACTTCTTCATGCCGTACACGTTTCTGCACTTGCTCATGCGCTTC
ACGTTTCTCCGCTTCCTCGCACGGTTCGTGTTTCTCCACTTCCTCACACG
GGTCACGTTGCTCGAGTTTCTCGTGCTTTTCACGTTACTCCACCTTCACG
TACTGTTCACGCTTCGTCGATTCATCTTGCTTTGACGTAGCCGTGTAAGC
CAACGCCGTCACTCGAAGCTTCTCGAAAGAGCGTCCACCCAGGTCGCTCC
CGCAACAAGAATTCCTCGTCGATTGTATCAAATATCTCGTGGTCAATGAC
TGCGTCTGATTTTCCAGGAGATGTCTCCGTAGAATGAAATCCTCGGCTGG
GAACGAAGCCCTGCGCCAAGAATACCCCTTACTTCGGAAGTGACTTGCTG
ACTCCGGGAACTGATCTATGGATTCCGCGAACTTTTCTTTACCGTAGTCC
GGCTAGCGTTCCTTCATTTATTTTCCCGTGGTCTCATGTCCACGTGCCCC
TTTTGCTGTCTTTGCACGCGTGTACCTTGTGTACCGTCGCCTTTCTTATT
TGGCGTCTCTCGTCGAGCAGATCTTGGAGGCGCACCCAGAGATAAGAACG
TTCAAGGCGGTGTTCAAGGACGTGATGGTCGAAAGAGGCCCCGTCCGGCC
TCCTGGCGGCGTTGTTGCGGGCCCCGTCATGGCGCTATGACGCGTGTCAA
CACACGCGAAGGGCGCGAACGAAGGTTATGGGAGGGTAGGAAATTGCGGA
GATCAGACAAAGAGAACGCCGCGGAACGGAGTATTTCCCGATCGTCTTTG
TGCTGTTTTAGCTTGCAGGGTTCTTTGGTTAGGAAATGATCAACTGAAAC
TATAGGTGTTGTTCTCCCCCCCATCGGTCGGCTTTAAACCTTTTCTACAG
TGACGTACGGCTTCTCAAGGGGCTCCGACAGTCCCACCTCGCGTAGGCGA
TTGTCTTGTTTGTGCTGGCATCGTCTTGAATTTCGAAAAGTGTTTGTGTT
GTTGAGGTGGAGGAAAGAGACGGATGAGATCATAGTTTGCCCAGAGCACG
ATCACATCGTCACTCGAGTGTGTCAAGCGGAGAGCGAGTTGAGCAGAGAA
TAATTTGATAAATGATGAGAGCGAAATCGTATTTGAGTTGAACAGAGATC
CGTTTCCCCCTAATCTTCCCGTCCTCGCCTTGCCGACACGAGCCGTAGAA
TATGGTATATTTCCCGTCGTGGAAGGCTGTTGTGAATAAGGGCTCTCCCT
TGGACCCGATGTGAAGTATGGGATATTTTTGCTGGTCATCGGGGGGTGCG
TGTCAGCGGGGGGTATCGTCGTCGTCGAAGGGAATATTTAGGGGTATTCC
TTAGACGCCCCTGCCGTCCAGACATTTTTCGATGACGTTTAAGCTCCTCG
TAGGATCAGGCAGACGACGTGTTTGTAGATTGCATCAGAATTGGACGAGA
ACGGGGGCTTAATTTATTTCCCTTGTTTCCGACCTGGCCTCTCAATGCTT
TTTTCCTCCGCTCGTCTCGGGCTTGAAAGATCTGACGCGTAGGCCGGATG
AAAAATTAAGTTCGGCATACTGTAAGTATATACGTGATCGGTTCGCGTAC
GCTGGGTGCCGGAAATTTGGCTCATTTTTCCCAGAGCCCACCCCCATCCC
GTTGGTTTCCTCGCGTGCTATTTCTGTGTCTATTACCTGTTTTCTGCGAA
GTGTAGGTGTTTGCAGTAGCCTTTCGTGGTTTGTCGCTGATTGTGACCGA
CATGTCGGCACAACGTCGCTGCGGGAAGCTAATGGCCGCTGCATCTTTGC
CTGGTGCCTACTTTTCGCATGCACCGTGCACAAATCTCGTACCGCCGGTG
CGTTTTGAATGGTTCGGGATCTGAAAAGGTGGCGTGAGACAGTAGCCACC
ATCGCTTCCTTCCAAGCGATGGTCGACTTCCTTGCATGGGAGAGATATGG
AGCTGGATAGAGTTCCCTCCAATGAAGGTCGGTCAAGTTGCGCAGTGAGT
ATGCATGTTTCTGTTTGTTTCGGGGACGGGATTCCAAGGCAAGTTGCATT
TTATTGTATATTTTGAAAACCCCAAGAAGAGCCTGTGTTGGTCGTTCGGA
GCTTCAAGTTGAAGTGGTTTTACTCAACTTGGTGCTTTCCCCCCCGCAAT
CACAATAATTTGGCTCTTCTCGGAAGAGGTAGGGCGTTCAGACTTGAGAC
ATGGTCTTCGAAGGCTGGACTGACGGTCGGCCCGAAGGAGACAAAGCACA
TGTCATGTTTGAGGCAGCGCGCCTCAATTCGTCAAAATCGGGGGTTCCAA
ACAGCAGAGGAAGGATGCCAGGTGTTTTCGTACTGACCCCTACGGCCGTC
GACCTCTCGCACCCATCCGAGAGGGAGCCTATCCAGCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:512822..515861-

>mRNA_P-fluviatile_contig1.28.1 ID=mRNA_P-fluviatile_contig1.28.1|Name=mRNA_P-fluviatile_contig1.28.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=582bp|location=Sequence derived from alignment at P-fluviatile_contig1:512822..515861- (Porterinema fluviatile SAG_2381)
ATGGAGCGGGTTGATGAGTTTTCCCCCCCTTTAGCTGACATTTTTGCTCC
TTCGTCCGGCCTTCCCATTCTCCTTAAACAGGTTTTTATCGAGCGGGATG
ATGAGTACGAGTTCATCGGGCTGTGGGCGGACGTGGAAAGTTTGAATGAG
TGCGAGGCATTGCCGCCAGAGATGGAGCGGGTTGATGAGTTTTCCCCCCC
TTTAGCTGACATTTTTGCTCCTTCGTCCGGCCTTCCCATTCTCCTTAAAC
AGGTTTTTATCGAGCGGGATGATGAGTACGAGTTCATCGGGCTGTGGGCG
GACGTGGAAAGTTTGAATGAGTGCGAGGCATTGCCGCCAGAGATCTTGGA
GGCGCACCCAGAGATAAGAACGTTCAAGGCGGTGTTCAAGGACGTGATGG
TCGAAAGAGGCCCCGTCCGGCCTCCTGGCGGCGTTGTTGCGGGCCCCGTC
ATGGCGCTATGAATCTTGGAGGCGCACCCAGAGATAAGAACGTTCAAGGC
GGTGTTCAAGGACGTGATGGTCGAAAGAGGCCCCGTCCGGCCTCCTGGCG
GCGTTGTTGCGGGCCCCGTCATGGCGCTATGA
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