mRNA_P-fluviatile_contig1.279.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.279.1
Unique NamemRNA_P-fluviatile_contig1.279.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.279.1 vs. uniprot
Match: A0A6H5KLI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI5_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 7.730e-46
Identity = 114/228 (50.00%), Postives = 136/228 (59.65%), Query Frame = 1 
Query:   58 QFWKPGERKPRDGGSGPGNS-------TDRQEPGDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTKS---KGKDGGRAAAADGIQ----EVSRSASKAPVSGPSQGLLAMKFMQRKARTEATQAEQRAKRHKLEEDFSSAYAKRLKMNNAGDRDR---LVCLPDEQDPALVLVGRRSFGGFNQVAEAAYDACVRDIEAGERLLWQPAGGGGDEGDGISDTEMAE 690
            Q+WKPGE++P  G  G           +DR   G +G                             +G K    KGK   R +   G+     EVSR+ASK PV+GPSQGLLAMKFMQRKA+ +  Q +++ KR KLE DFSS+YAKRLK +    +DR   L+C  DEQDPALV+VGRRSFGGFN VAEAAYDAC+RDIEAGERL  +P  G    GDGISDTEMAE
Sbjct:    2 QYWKPGEKRPGGGEGGXXXXXXXXXXXSDRVSDG-QGRTDSKKRVDKSRRDEGGRGSTDKGNRRSSEGAKKRVRKGKGKERHSTGSGLGGIKGEVSRAASKPPVAGPSQGLLAMKFMQRKAQADEAQKQRQEKREKLESDFSSSYAKRLKADKDTGKDRRKVLICRRDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERL-GRPGRGEDAGGDGISDTEMAE 227
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BLAST of mRNA_P-fluviatile_contig1.279.1 vs. uniprot
Match: D8LLK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK6_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 6.830e-44
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = 1 
Query:  295 EVSRSASKAPVSGPSQGLLAMKFMQRKARTEATQAEQRAKRHKLEEDFSSAYAKRLKMNNAGDRDRLVCLPDEQDPALVLVGRRSFGGFNQVAEAAYDACVRDIEAGERLLWQPAGGGGDEGDGISDTEMAE 690
            EVSR+ASK PV+GPSQGLLAMKFMQRK + +  Q +++ KR KLE  FSS+YAKRLK +    +DRL+C  DEQDPALV+VGRRSFGGFN VAEAAYDAC+RDIEAGER+  +P  G    G GISDTEMAE
Sbjct:   97 EVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLESYFSSSYAKRLKADKDTGKDRLICRHDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERI-GRPGRGEDAGGGGISDTEMAE 227
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BLAST of mRNA_P-fluviatile_contig1.279.1 vs. uniprot
Match: W2PSS8_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PSS8_PHYPN)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-6
Identity = 46/125 (36.80%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:  235 KGTKSKGKDGGRAAAADGIQEVSRSASKAPVSGPSQGLLAMKFMQRKARTEATQAEQRAKRHKLEEDFSSAYAKRLKMNNAGDRDRLVCLPDEQDPAL-VLVGRRSFGGFNQVAEAAYDACVRDI 606
            K   S  KD   A   D +   +R   KAP    SQ  LAMKFMQRK  TEA +     ++HK +      +   L+ +   D  ++VC+ D  DP+L +L+GRRSFGGFN+  E  +    R +
Sbjct:   15 KDKTSSNKDNAMAVKGDSLP--ARKVQKAPAK-LSQKTLAMKFMQRKKTTEAQRIAAVKEQHKQD-----TWETTLEEDQGDDGSKIVCMRDVPDPSLPLLLGRRSFGGFNKGVEDEFKEASRAL 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KLI5_9PHAE7.730e-4650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK6_ECTSI6.830e-4468.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W2PSS8_PHYPN1.620e-636.80Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3408013..3411208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionM-phase phosphoprotein 6
Ec32 orthologEc-04_005450.1
Exons4
Model size1580
Cds size1107
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.279.1prot_P-fluviatile_contig1.279.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3408441..3411163 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.9870565-UTR-P-fluviatile_contig1:3408012..34084401622815315.9870565-UTR-P-fluviatile_contig1:3408012..3408440Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3408013..3408440 -
1693561482.5088098-UTR-P-fluviatile_contig1:3408012..34084401693561482.5088098-UTR-P-fluviatile_contig1:3408012..3408440Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3408013..3408440 -
1622815316.039952-UTR-P-fluviatile_contig1:3411163..34112081622815316.039952-UTR-P-fluviatile_contig1:3411163..3411208Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3411164..3411208 -
1693561482.8992293-UTR-P-fluviatile_contig1:3411163..34112081693561482.8992293-UTR-P-fluviatile_contig1:3411163..3411208Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3411164..3411208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.9990525-CDS-P-fluviatile_contig1:3408440..34089001622815315.9990525-CDS-P-fluviatile_contig1:3408440..3408900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3408441..3408900 -
1693561482.5185845-CDS-P-fluviatile_contig1:3408440..34089001693561482.5185845-CDS-P-fluviatile_contig1:3408440..3408900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3408441..3408900 -
1622815316.009459-CDS-P-fluviatile_contig1:3409446..34096471622815316.009459-CDS-P-fluviatile_contig1:3409446..3409647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3409447..3409647 -
1693561482.8609061-CDS-P-fluviatile_contig1:3409446..34096471693561482.8609061-CDS-P-fluviatile_contig1:3409446..3409647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3409447..3409647 -
1622815316.019648-CDS-P-fluviatile_contig1:3410175..34103061622815316.019648-CDS-P-fluviatile_contig1:3410175..3410306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3410176..3410306 -
1693561482.8781135-CDS-P-fluviatile_contig1:3410175..34103061693561482.8781135-CDS-P-fluviatile_contig1:3410175..3410306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3410176..3410306 -
1622815316.0305822-CDS-P-fluviatile_contig1:3410848..34111631622815316.0305822-CDS-P-fluviatile_contig1:3410848..3411163Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3410849..3411163 -
1693561482.8894672-CDS-P-fluviatile_contig1:3410848..34111631693561482.8894672-CDS-P-fluviatile_contig1:3410848..3411163Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3410849..3411163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.279.1

>prot_P-fluviatile_contig1.279.1 ID=prot_P-fluviatile_contig1.279.1|Name=mRNA_P-fluviatile_contig1.279.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=369bp
MQTAQFWKPGERKPRDGGSGPGNSTDRQEPGDRGEERTKGSRRDRAGKEG
NNEKESSTGNVKKKGTKSKGKDGGRAAAADGIQEVSRSASKAPVSGPSQG
LLAMKFMQRKARTEATQAEQRAKRHKLEEDFSSAYAKRLKMNNAGDRDRL
VCLPDEQDPALVLVGRRSFGGFNQVAEAAYDACVRDIEAGERLLWQPAGG
GGDEGDGISDTEMAETRLSERAGDLRVPMVCVPKAGFFHFVARLRGLQQL
GKSRSWSSRTCCWPGIDCSEHAGVESYTKAFARLCLDFEFKRPSAAAAPP
LPPPLSRPPLQLPLPTGFSSLKPLGASHGLKFHNSVFCVMLAMRLYVGNL
VCAVDCFGIDEARGHRCD*
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mRNA from alignment at P-fluviatile_contig1:3408013..3411208-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.279.1 ID=mRNA_P-fluviatile_contig1.279.1|Name=mRNA_P-fluviatile_contig1.279.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3196bp|location=Sequence derived from alignment at P-fluviatile_contig1:3408013..3411208- (Porterinema fluviatile SAG_2381)
GCTTGTATATGCTGATTGCTGAACCTTGCTGTTCAGCGTGTCGTCATGCA
GACAGCGCAATTCTGGAAGCCAGGAGAGAGAAAGCCGCGCGATGGAGGGA
GTGGGCCAGGAAACTCGACCGATAGACAGGAGCCGGGCGACAGAGGCGAG
GAGAGGACGAAGGGCAGCAGGCGGGACCGTGCCGGAAAGGAAGGCAACAA
CGAAAAGGAAAGCAGCACCGGGAACGTCAAAAAGAAAGGGACGAAGTCCA
AAGGGAAGGACGGCGGCAGGGCTGCTGCCGCTGATGGCATTCAGGAGGTT
TCACGCTCCGCCTCCAAAGCTCCCGTCTCAGGACCATCACAGGGCCTGCT
GGCGATGAAGGTATTCGTGATGACTGGAGGAGCTTCATGCGCTCTGCAGC
CACCTGATATCGATCGGCGTGTCCACTTGCGTGGAGTATGGAGAGAGGCG
CGCGGGTTGCGAGCAAAACGGAGATGTTTTTCCTTGTGTCCGGTATCAGA
ACTATGCTTTCTCCCCCGCATATGCCCCCTTCGGTTTGTTCATGAACCTA
AATATATATGAGGCCACCATCGTCCAGCGGTCACTCTCGCGGGATTTTGA
GTGTTCCACATCGGGGTGGCAGAAAAAATGGCAGCATTTAGAAAGTACTT
CTTGGTCAGTGCATTTCGAAATCAACTCGGGTCGCTGCGGAGCCGATCGA
GTCTGCCGGCTAGTCTCGTCTTCCAAGAGCTGCCGTCCGCTCATGATCCA
TCCACGACTGGGACGAGGCATTCGCTGGGTGCATGCTTGTACACGCGCGA
TGTGTGTGGTCCAAGGTCCCGGTCACTTTGATTTGAATTTCGTGTTGTCT
GTCTGTCTCTCCCGGTGACTGCACGTGCCTCCTGCCCTGTTGTCTGTCAC
AGTTCATGCAGCGAAAGGCAAGGACGGAAGCAACTCAGGCAGAACAGAGG
GCCAAACGGCACAAGCTGGAGGAGGACTTCAGCTCGGCTTACGCGAAACG
GCTGAAGATGAACAACGCCGGAGATAGAGACCGGTGAGCCACGACCTCGC
TTCAATATTGGGAGGCGTTCATCTTGATCGTGCGGGAGCCATGGCCCTGT
GTGCTTGTACACCGAGCGGTGACACGACGGTATTTTCCCTCTGCTCGGGA
TGGATATTCGCTACGAGGAGGTGCAGCTGAGTGAAGAAAACAAACAAATG
TTAGCGATGCAAATTCGGCCGGAATTAGTAATTGAGTGTACTGTGGCGTG
CTGCGGTGGTGCGGCGACAATGTCAGCTAGCCACTCGAAACCAGCTGCCG
CAGCCTCATCGTACCTTCAAGTCACATCTTCCAGCACGTACACCCCTCGA
CTTCAAAAAAGCGCCGTGGCAGCAGCGATGACATTTCCTGGCAGTCCCCT
TCTTTTCATGAACCTTCCCCATCTCCATGCATTTACGCTTACCACAGTGT
GATTCCATTCAGAGACTTGAGCCCCATCCGACCCTCCTTCGCTCATGTGC
GGCGACCCCCGCCGCAACCCTCAACCGCCCACGGCGACACCGACGCGATC
ACGTACCAAAGACTCGTCTGTCTGCCAGACGAGCAAGACCCCGCGCTCGT
ACTGGTAGGGAGGAGGTCCTTTGGAGGCTTCAACCAGGTTGCGGAGGCCG
CGTACGACGCGTGCGTTAGGGACATTGAGGCCGGGGAGAGGTTATTATGG
CAGCCGGCGGGCGGCGGCGGGGATGAGGGCGACGGCATATCGGACACGGA
GATGGCCGAGACGTGAGTGTGGCCCAGGATGCACGGCAATTATTGCCTAG
GATTCATGCGCGTGTGCTGCAGTTTGTTGCGCTTATCGTCTACTCATCCG
CTATTGAAGTTACCGCTGTTTTCGTTCAATCGTGCCTCTCCTGTGCATCC
GCGTGCTGGTTTCACGTTCATTCCTCAAGATGTAGAAACGTTACTAGAGC
TTGCCCCAAAACCTTCCGACATGTTTTCGTTTCGCACGATGACAATGGAT
CGTGGAAACATTGCGAGAAATGCACCATGTGAATACGTGCATGACGGGGA
GCCTACACCTCTCGCCCCCACCCATCCTATCTGCCGGCCCCCGACGTTAA
TTACCCGTCCATCCTGCAGGCTTGGGAAGAACGTGCGCTTCGGTGGTCGT
AGATGACCCCACCATAGCCAACCGGCCGCCCCACCGAGGTCATATTTTTT
CGGGATGTATACTCCCGTCCCTTCCGTCCTGCCGCCGTGCATTGGAAACT
GCTTCCCCAGCGGAAATCAATGAATTGCTTTTTGCAACGCTCGATCCTTG
ATTTGCAGGCGGCTTTCGGAGAGGGCGGGCGACCTTCGGGTTCCGATGGT
ATGTGTTCCAAAGGCAGGCTTTTTTCATTTCGTCGCAAGATTGAGAGGGT
TGCAGCAGTTAGGCAAGAGCCGAAGTTGGTCGAGTCGCACCTGTTGCTGG
CCCGGGATTGACTGCTCTGAGCACGCCGGGGTTGAAAGCTACACGAAGGC
ATTCGCTCGACTGTGTCTGGATTTCGAATTCAAACGCCCCAGCGCTGCTG
CCGCGCCACCGCTACCTCCGCCGCTATCGCGTCCGCCGCTGCAGCTGCCC
TTGCCGACCGGATTCAGTTCGCTCAAGCCCTTGGGCGCTTCGCATGGATT
GAAATTTCACAACAGTGTGTTTTGCGTCATGCTGGCAATGAGGTTATATG
TTGGCAACCTTGTCTGTGCTGTTGACTGCTTCGGGATCGACGAAGCAAGA
GGCCATCGCTGTGATTGAGAATTGTTAGGTATCACTGGCGTATTTCCGTG
CCCGTAAGGCGTGATGCACACATGTATCGACATGTGTTGTCGACTTTGCT
CTTGCTTGCTTCTTCATATGTAGCAATTGATGTCATTTCTATCTTGTAGG
CATGCTTGCTCCCTGCGGCCATTTCAATTTGGTGGGGAGCTGCCGATCTA
AAAGTTGGCGGTGGATGACATATCAAGAATGTTGGGAACTTGAGTGTTGC
GTAAACCTTGCTTTTTGTTTGAAAACTTGATGTCTGCGACCTCAACGCGG
ACTGGGCGAGAGTGGTCCTCTTCCTCAGGTTCGGAATTCGAAGTCACGTG
TAGCTCAAGTCCAAATCCACTATCGATCGCCCGAAGCGGTGCAGCAGTTC
AATGCAGATCCCGCTGAATACTCGGTATCTTACACTTCGAAGCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3408013..3411208-

>mRNA_P-fluviatile_contig1.279.1 ID=mRNA_P-fluviatile_contig1.279.1|Name=mRNA_P-fluviatile_contig1.279.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2214bp|location=Sequence derived from alignment at P-fluviatile_contig1:3408013..3411208- (Porterinema fluviatile SAG_2381)
ATGCAGACAGCGCAATTCTGGAAGCCAGGAGAGAGAAAGCCGCGCGATGG
AGGGAGTGGGCCAGGAAACTCGACCGATAGACAGGAGCCGGGCGACAGAG
GCGAGGAGAGGACGAAGGGCAGCAGGCGGGACCGTGCCGGAAAGGAAGGC
AACAACGAAAAGGAAAGCAGCACCGGGAACGTCAAAAAGAAAGGGACGAA
GTCCAAAGGGAAGGACGGCGGCAGGGCTGCTGCCGCTGATGGCATTCAGG
AGGTTTCACGCTCCGCCTCCAAAGCTCCCGTCTCAGGACCATCACAGGGC
CTGCTGGCGATGAAGATGCAGACAGCGCAATTCTGGAAGCCAGGAGAGAG
AAAGCCGCGCGATGGAGGGAGTGGGCCAGGAAACTCGACCGATAGACAGG
AGCCGGGCGACAGAGGCGAGGAGAGGACGAAGGGCAGCAGGCGGGACCGT
GCCGGAAAGGAAGGCAACAACGAAAAGGAAAGCAGCACCGGGAACGTCAA
AAAGAAAGGGACGAAGTCCAAAGGGAAGGACGGCGGCAGGGCTGCTGCCG
CTGATGGCATTCAGGAGGTTTCACGCTCCGCCTCCAAAGCTCCCGTCTCA
GGACCATCACAGGGCCTGCTGGCGATGAAGTTCATGCAGCGAAAGGCAAG
GACGGAAGCAACTCAGGCAGAACAGAGGGCCAAACGGCACAAGCTGGAGG
AGGACTTCAGCTCGGCTTACGCGAAACGGCTGAAGATGAACAACGCCGGA
GATAGAGACCGTTCATGCAGCGAAAGGCAAGGACGGAAGCAACTCAGGCA
GAACAGAGGGCCAAACGGCACAAGCTGGAGGAGGACTTCAGCTCGGCTTA
CGCGAAACGGCTGAAGATGAACAACGCCGGAGATAGAGACCGACTCGTCT
GTCTGCCAGACGAGCAAGACCCCGCGCTCGTACTGGTAGGGAGGAGGTCC
TTTGGAGGCTTCAACCAGGTTGCGGAGGCCGCGTACGACGCGTGCGTTAG
GGACATTGAGGCCGGGGAGAGGTTATTATGGCAGCCGGCGGGCGGCGGCG
GGGATGAGGGCGACGGCATATCGGACACGGAGATGGCCGAGACACTCGTC
TGTCTGCCAGACGAGCAAGACCCCGCGCTCGTACTGGTAGGGAGGAGGTC
CTTTGGAGGCTTCAACCAGGTTGCGGAGGCCGCGTACGACGCGTGCGTTA
GGGACATTGAGGCCGGGGAGAGGTTATTATGGCAGCCGGCGGGCGGCGGC
GGGGATGAGGGCGACGGCATATCGGACACGGAGATGGCCGAGACGCGGCT
TTCGGAGAGGGCGGGCGACCTTCGGGTTCCGATGGTATGTGTTCCAAAGG
CAGGCTTTTTTCATTTCGTCGCAAGATTGAGAGGGTTGCAGCAGTTAGGC
AAGAGCCGAAGTTGGTCGAGTCGCACCTGTTGCTGGCCCGGGATTGACTG
CTCTGAGCACGCCGGGGTTGAAAGCTACACGAAGGCATTCGCTCGACTGT
GTCTGGATTTCGAATTCAAACGCCCCAGCGCTGCTGCCGCGCCACCGCTA
CCTCCGCCGCTATCGCGTCCGCCGCTGCAGCTGCCCTTGCCGACCGGATT
CAGTTCGCTCAAGCCCTTGGGCGCTTCGCATGGATTGAAATTTCACAACA
GTGTGTTTTGCGTCATGCTGGCAATGAGGTTATATGTTGGCAACCTTGTC
TGTGCTGTTGACTGCTTCGGGATCGACGAAGCAAGAGGCCATCGCTGTGA
TTGAGCGGCTTTCGGAGAGGGCGGGCGACCTTCGGGTTCCGATGGTATGT
GTTCCAAAGGCAGGCTTTTTTCATTTCGTCGCAAGATTGAGAGGGTTGCA
GCAGTTAGGCAAGAGCCGAAGTTGGTCGAGTCGCACCTGTTGCTGGCCCG
GGATTGACTGCTCTGAGCACGCCGGGGTTGAAAGCTACACGAAGGCATTC
GCTCGACTGTGTCTGGATTTCGAATTCAAACGCCCCAGCGCTGCTGCCGC
GCCACCGCTACCTCCGCCGCTATCGCGTCCGCCGCTGCAGCTGCCCTTGC
CGACCGGATTCAGTTCGCTCAAGCCCTTGGGCGCTTCGCATGGATTGAAA
TTTCACAACAGTGTGTTTTGCGTCATGCTGGCAATGAGGTTATATGTTGG
CAACCTTGTCTGTGCTGTTGACTGCTTCGGGATCGACGAAGCAAGAGGCC
ATCGCTGTGATTGA
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