mRNA_P-fluviatile_contig1.276.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.276.1
Unique NamemRNA_P-fluviatile_contig1.276.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3370724..3371122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.0139925-CDS-P-fluviatile_contig1:3370723..33709601622815266.0139925-CDS-P-fluviatile_contig1:3370723..3370960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3370724..3370960 +
1693561298.2060297-CDS-P-fluviatile_contig1:3370723..33709601693561298.2060297-CDS-P-fluviatile_contig1:3370723..3370960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3370724..3370960 +
1622815266.027214-CDS-P-fluviatile_contig1:3370975..33711221622815266.027214-CDS-P-fluviatile_contig1:3370975..3371122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3370976..3371122 +
1693561298.21647-CDS-P-fluviatile_contig1:3370975..33711221693561298.21647-CDS-P-fluviatile_contig1:3370975..3371122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3370976..3371122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.276.1prot_P-fluviatile_contig1.276.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3370724..3371122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.276.1

>prot_P-fluviatile_contig1.276.1 ID=prot_P-fluviatile_contig1.276.1|Name=mRNA_P-fluviatile_contig1.276.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=128bp
RADFAAEAAREADRPADRAGPRELPRPRPLDRPRAALVTIAIRSVRAASP
GRPARVLLTRAALRRLVSTAGQERRGGRGRKTRLPCGNSARLTTWLVYAP
SLSTYFSYLPSHFLTTRAYFRGHSSQK*
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mRNA from alignment at P-fluviatile_contig1:3370724..3371122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.276.1 ID=mRNA_P-fluviatile_contig1.276.1|Name=mRNA_P-fluviatile_contig1.276.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=399bp|location=Sequence derived from alignment at P-fluviatile_contig1:3370724..3371122+ (Porterinema fluviatile SAG_2381)
CGTGCGGATTTCGCGGCCGAAGCCGCACGTGAAGCCGACCGTCCCGCAGA
CCGAGCCGGTCCCCGTGAACTACCCCGTCCTCGACCACTCGACCGTCCCC
GGGCCGCTCTCGTGACGATAGCCATCAGGTCTGTCCGCGCTGCGTCACCA
GGTCGTCCAGCGCGCGTGCTCCTCACCCGCGCGGCCCTCCGGCGCTTGGT
CTCCACAGCAGGACAAGAGAGGAGAGGAGGGAGAGGAAGAGAAGAGGAGA
GGAGAAAAACTCGACTTCCTTGCGGAAATTCCGCACGGCTCACCACCTGG
CTTGTATACGCTCCCTCTCTGTCCACGTACTTCTCGTATCTACCCAGTCA
CTTCCTAACAACTCGGGCTTATTTCCGTGGACACTCCTCCCAAAAGTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3370724..3371122+

>mRNA_P-fluviatile_contig1.276.1 ID=mRNA_P-fluviatile_contig1.276.1|Name=mRNA_P-fluviatile_contig1.276.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=768bp|location=Sequence derived from alignment at P-fluviatile_contig1:3370724..3371122+ (Porterinema fluviatile SAG_2381)
CGTGCGGATTTCGCGGCCGAAGCCGCACGTGAAGCCGACCGTCCCGCAGA
CCGAGCCGGTCCCCGTGAACTACCCCGTCCTCGACCACTCGACCGTCCCC
GGGCCGCTCTCGTGACGATAGCCATCAGGTCTGTCCGCGCTGCGTCACCA
GGTCGTCCAGCGCGCGTGCTCCTCACCCGCGCGGCCCTCCGGCGCTTGGT
CTCCACAGCAGGACAAGAGAGGAGAGGAGGGAGAGGACGTGCGGATTTCG
CGGCCGAAGCCGCACGTGAAGCCGACCGTCCCGCAGACCGAGCCGGTCCC
CGTGAACTACCCCGTCCTCGACCACTCGACCGTCCCCGGGCCGCTCTCGT
GACGATAGCCATCAGGTCTGTCCGCGCTGCGTCACCAGGTCGTCCAGCGC
GCGTGCTCCTCACCCGCGCGGCCCTCCGGCGCTTGGTCTCCACAGCAGGA
CAAGAGAGGAGAGGAGGGAGAGGAAGAAAAACTCGACTTCCTTGCGGAAA
TTCCGCACGGCTCACCACCTGGCTTGTATACGCTCCCTCTCTGTCCACGT
ACTTCTCGTATCTACCCAGTCACTTCCTAACAACTCGGGCTTATTTCCGT
GGACACTCCTCCCAAAAGTAAAGAAAAACTCGACTTCCTTGCGGAAATTC
CGCACGGCTCACCACCTGGCTTGTATACGCTCCCTCTCTGTCCACGTACT
TCTCGTATCTACCCAGTCACTTCCTAACAACTCGGGCTTATTTCCGTGGA
CACTCCTCCCAAAAGTAA
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