mRNA_P-fluviatile_contig1.270.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.270.1
Unique NamemRNA_P-fluviatile_contig1.270.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.270.1 vs. uniprot
Match: A0A6H5K5G6_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.090e-17
Identity = 66/127 (51.97%), Postives = 83/127 (65.35%), Query Frame = 3 
Query:  912 GRRGGSGHSSRRGRAAVMRTAAS-LAPRTRVLCLDIFSSAVDGDEIRRWRPAQIAEVIMARGESSEGELARVTFDDDNQDGNQSVCLRLRDEWSRLALAQSLTEEEMRRGAPLLVDALAASRRQFEP 1289
            GR   S  S R GRAA ++  A+ L P T +L LDIF SA  GDEIR+WRPA++AE++ A G    G  ARV F    ++  QSV L L  EWSRLA   SLTEEEM RGA L  +ALAAS+++++P
Sbjct:  330 GRDSSSEDSLRGGRAAEIKLIATGLEPGTELLYLDIFISATGGDEIRQWRPAEVAEIVPADGG---GLQARVVFASYAEE-KQSVYLHLEHEWSRLAPTLSLTEEEMARGASLSGEALAASQKRYKP 452
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5G6_9PHAE1.090e-1751.97Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3304097..3306798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1417
Cds size1413
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.270.1prot_P-fluviatile_contig1.270.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3304097..3306796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.954058-CDS-P-fluviatile_contig1:3304096..33044441622815265.954058-CDS-P-fluviatile_contig1:3304096..3304444Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3304097..3304444 -
1693561297.141124-CDS-P-fluviatile_contig1:3304096..33044441693561297.141124-CDS-P-fluviatile_contig1:3304096..3304444Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3304097..3304444 -
1622815265.9667888-CDS-P-fluviatile_contig1:3305731..33067961622815265.9667888-CDS-P-fluviatile_contig1:3305731..3306796Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3305732..3306796 -
1693561297.3736937-CDS-P-fluviatile_contig1:3305731..33067961693561297.3736937-CDS-P-fluviatile_contig1:3305731..3306796Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3305732..3306796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.9769893-UTR-P-fluviatile_contig1:3306796..33067981622815265.9769893-UTR-P-fluviatile_contig1:3306796..3306798Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3306797..3306798 -
1693561298.1878147-UTR-P-fluviatile_contig1:3306796..33067981693561298.1878147-UTR-P-fluviatile_contig1:3306796..3306798Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3306797..3306798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.270.1

>prot_P-fluviatile_contig1.270.1 ID=prot_P-fluviatile_contig1.270.1|Name=mRNA_P-fluviatile_contig1.270.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=471bp
MGPVFDSGSREDWILPAETREIARLMVTPGLANGLHCPVSSPAAYPFTPR
PALSRRRSRSFGDATRPEPAPPPRPGGVFSVESISHVPGLDNLERTLRSD
ATSEEREREETASTGAPSLRLPNKSSLFLGTNNAPSLFRRRSADGVTSSS
NGVQPKRADCTREWNHAGADPSGGNSRDNNISAVLPAAENLPRKEQQQQP
MVDALTMPPPTPAGPVTTPAPAPAPGPTLPSYQEARRQFQQEQERQHQHQ
EHGRHVAGPSTSATPRMELRNPISEKIKTTAAARRSPAGTKRAKNGVSDE
TLNGRRGGSGHSSRRGRAAVMRTAASLAPRTRVLCLDIFSSAVDGDEIRR
WRPAQIAEVIMARGESSEGELARVTFDDDNQDGNQSVCLRLRDEWSRLAL
AQSLTEEEMRRGAPLLVDALAASRRQFEPRQPRNRRRGQHGRPAGASEGG
ERGVRRANDVRDRRGRTGFFA
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mRNA from alignment at P-fluviatile_contig1:3304097..3306798-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.270.1 ID=mRNA_P-fluviatile_contig1.270.1|Name=mRNA_P-fluviatile_contig1.270.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2702bp|location=Sequence derived from alignment at P-fluviatile_contig1:3304097..3306798- (Porterinema fluviatile SAG_2381)
AAATGGGCCCCGTGTTTGATAGCGGAAGCAGGGAAGATTGGATTCTACCG
GCCGAGACGCGTGAGATAGCCCGATTGATGGTCACGCCAGGCCTGGCGAA
TGGTTTACATTGTCCTGTCTCTAGTCCAGCAGCATATCCTTTCACGCCCC
GTCCTGCTCTAAGCAGAAGAAGAAGTCGCAGTTTCGGGGATGCTACACGT
CCGGAGCCGGCACCTCCTCCCAGGCCTGGTGGTGTATTTTCTGTAGAGTC
GATATCGCATGTACCCGGTCTCGACAACTTGGAGCGGACGCTACGATCTG
ACGCAACCAGTGAGGAGCGTGAGCGTGAGGAGACGGCCTCGACCGGAGCC
CCAAGCCTCCGACTACCTAACAAAAGCTCTTTGTTTTTGGGCACCAACAA
CGCGCCTTCCCTCTTCCGCAGACGAAGCGCTGACGGCGTCACCAGCAGCT
CCAACGGAGTACAACCAAAGCGGGCCGATTGTACCAGAGAGTGGAACCAC
GCCGGTGCCGATCCGTCTGGGGGCAACAGCAGGGACAACAACATCTCAGC
AGTATTGCCGGCGGCTGAGAATTTGCCACGGAAGGAACAACAGCAACAAC
CCATGGTGGACGCGCTCACGATGCCTCCGCCGACGCCCGCGGGTCCTGTG
ACCACCCCCGCCCCCGCGCCGGCCCCAGGACCGACGCTACCGAGCTATCA
GGAAGCAAGAAGGCAATTCCAGCAGGAGCAGGAGCGGCAGCACCAGCACC
AGGAGCACGGGCGCCACGTCGCTGGTCCCTCAACATCAGCCACACCACGC
ATGGAGCTGAGGAACCCCATCAGCGAAAAGATCAAGACGACAGCTGCTGC
TCGTCGGTCGCCCGCCGGTACTAAAAGGGCTAAAAACGGAGTCTCCGACG
AGACGCTTAACGGGAGGAGGGGGGGCTCGGGACATAGCTCGCGAAGAGGA
AGGGCGGCGGTTATGCGGACGGCGGCGAGCTTGGCGCCGAGGACGCGCGT
GCTGTGTCTTGACATTTTCTCCTCCGCAGTCGACGGCGACGAGATACGAC
GCTGGCGTCCTGCGCAGGTAAACACACCACCACCACCACCACGGAAGAGA
GTTTCGCTTGCACTCGGCAAGTAATGCATCTGAACGTTGCATTGAAGGCG
TAGGATGAAAGTGGACGTTGTGGTGCTTTGTGTGTTTCATGAAATCCCGT
GGCCTTGAATCGAGACCATCTCTCTGTGTTGTGTGTTGTGTTGTCCTCTT
GTTATACGTTGTGGCGGGTGTTGCCCTCTTATACTCTGCACTTAGTGCAG
TACACTTGTTCAATGTCTTATTGGCGTACAACTACGACCAGCCGGCGTCA
AACAGGAGGAGGGGAGGTAAACACACAGCAGGAGCGTGGTCCTTTTTCCC
CTTTTTTCTGTTGTGCCCCACTTTCCTCCTCTGGTGCGCGCTTCATTTTT
CATCGCGAGAAGGGTTCAGCAGTCTCCCCTCAACAGTGTGAAGTCGATTA
TCTACTCGCGAACTTTTAAGATCTCATCGGTTGCTACCCCGAAGTTGCAA
AAAAGAAAAAACATTGATCGGAATTCGAACTCACGACCTTGGTGCTAGCG
GGAATTCGAGATTACTCGCCAGACCACCGGGGCGACTCTGCTGCTCGGTG
GACTTCCGTGAGGGGACAGCATCGGACATTTTATTCCAAGAACCGCGATT
CACGTGCGGCCCTTCCCCTCCCGCGCTTCTTGCCGGAACCTACTCCAATC
TGTTACAAGCCCGACGGAAAGCGACTCATGCGTGCGTACATCGCTGCCTC
GCATTTGTGTTTTTGGAAGACTTGAGCTCGCATGTAGAATAGGGACCGAA
ATTCAGCTCGGGGTCCAATGATTTTGAACCCATAAGATCCACTCAGTCCT
GGATACCAGTTCGGTCCGAAGGCGGCGCACATATTCGCGTCCTTGCACGG
TCGGGGATCAGACGTCACAGGTCAAGTTTTGCGGCTGCTCCACTTCCTGG
TTGTTTTCCCTTTTCACATGACCGAGCCCGGTAGTTCCCCCGTTTGAAGA
GCCTGCCGTTGGACAAGTCACCTCTGATCCGAGCCGAAGGAGTTGCAGCA
AAAATTTCATTCGTCAAGAGAACGCGCGCGCGCACACCAACAACGAAGCC
CCCCCCTCCCCTTTACTCGCATACGCCATTTGCACAACTAGAGAAATTTA
GCTCCGACAAGCAGAAGCAGTCTCGCGGACGCTTTAGCCTCGGGTCATCT
TTCACTTGTGCAGAGCCTGCGCCTGTCGTGACGAAAGAACGGTCACTGAA
ATCGTCCGCAAAATGATTGCAGCTGACCCGGCCGCTGTCCGCCGCCCCCC
GTAGATCGCGGAAGTCATCATGGCAAGAGGAGAGTCATCAGAGGGAGAAC
TGGCTCGCGTCACGTTTGATGACGACAACCAGGACGGAAACCAAAGCGTG
TGTCTACGTCTTAGGGACGAGTGGAGCCGGCTAGCCCTCGCGCAGTCGCT
CACCGAGGAGGAAATGCGCCGGGGGGCGCCGCTCCTCGTCGATGCTCTAG
CCGCTAGTCGGAGGCAGTTCGAACCCCGGCAGCCCCGCAACCGGCGGCGA
GGCCAACATGGCCGGCCCGCGGGAGCGTCGGAGGGGGGGGAGCGAGGAGT
CAGACGCGCGAACGATGTCCGCGACAGAAGGGGTAGGACCGGCTTTTTTG
CC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3304097..3306798-

>mRNA_P-fluviatile_contig1.270.1 ID=mRNA_P-fluviatile_contig1.270.1|Name=mRNA_P-fluviatile_contig1.270.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2826bp|location=Sequence derived from alignment at P-fluviatile_contig1:3304097..3306798- (Porterinema fluviatile SAG_2381)
ATGGGCCCCGTGTTTGATAGCGGAAGCAGGGAAGATTGGATTCTACCGGC
CGAGACGCGTGAGATAGCCCGATTGATGGTCACGCCAGGCCTGGCGAATG
GTTTACATTGTCCTGTCTCTAGTCCAGCAGCATATCCTTTCACGCCCCGT
CCTGCTCTAAGCAGAAGAAGAAGTCGCAGTTTCGGGGATGCTACACGTCC
GGAGCCGGCACCTCCTCCCAGGCCTGGTGGTGTATTTTCTGTAGAGTCGA
TATCGCATGTACCCGGTCTCGACAACTTGGAGCGGACGCTACGATCTGAC
GCAACCAGTGAGGAGCGTGAGCGTGAGGAGACGGCCTCGACCGGAGCCCC
AAGCCTCCGACTACCTAACAAAAGCTCTTTGTTTTTGGGCACCAACAACG
CGCCTTCCCTCTTCCGCAGACGAAGCGCTGACGGCGTCACCAGCAGCTCC
AACGGAGTACAACCAAAGCGGGCCGATTGTACCAGAGAGTGGAACCACGC
CGGTGCCGATCCGTCTGGGGGCAACAGCAGGGACAACAACATCTCAGCAG
TATTGCCGGCGGCTGAGAATTTGCCACGGAAGGAACAACAGCAACAACCC
ATGGTGGACGCGCTCACGATGCCTCCGCCGACGCCCGCGGGTCCTGTGAC
CACCCCCGCCCCCGCGCCGGCCCCAGGACCGACGCTACCGAGCTATCAGG
AAGCAAGAAGGCAATTCCAGCAGGAGCAGGAGCGGCAGCACCAGCACCAG
GAGCACGGGCGCCACGTCGCTGGTCCCTCAACATCAGCCACACCACGCAT
GGAGCTGAGGAACCCCATCAGCGAAAAGATCAAGACGACAGCTGCTGCTC
GTCGGTCGCCCGCCGGTACTAAAAGGGCTAAAAACGGAGTCTCCGACGAG
ACGCTTAACGGGAGGAGGGGGGGCTCGGGACATAGCTCGCGAAGAGGAAG
GGCGGCGGTTATGCGGACGGCGGCGAGCTTGGCGCCGAGGACGCGCGTGC
TGTGTCTTGACATTTTCTCCTCCGCAGTCGACGGCGACGAGATACGACGC
TGGCGTCCTGCGCAGATGGGCCCCGTGTTTGATAGCGGAAGCAGGGAAGA
TTGGATTCTACCGGCCGAGACGCGTGAGATAGCCCGATTGATGGTCACGC
CAGGCCTGGCGAATGGTTTACATTGTCCTGTCTCTAGTCCAGCAGCATAT
CCTTTCACGCCCCGTCCTGCTCTAAGCAGAAGAAGAAGTCGCAGTTTCGG
GGATGCTACACGTCCGGAGCCGGCACCTCCTCCCAGGCCTGGTGGTGTAT
TTTCTGTAGAGTCGATATCGCATGTACCCGGTCTCGACAACTTGGAGCGG
ACGCTACGATCTGACGCAACCAGTGAGGAGCGTGAGCGTGAGGAGACGGC
CTCGACCGGAGCCCCAAGCCTCCGACTACCTAACAAAAGCTCTTTGTTTT
TGGGCACCAACAACGCGCCTTCCCTCTTCCGCAGACGAAGCGCTGACGGC
GTCACCAGCAGCTCCAACGGAGTACAACCAAAGCGGGCCGATTGTACCAG
AGAGTGGAACCACGCCGGTGCCGATCCGTCTGGGGGCAACAGCAGGGACA
ACAACATCTCAGCAGTATTGCCGGCGGCTGAGAATTTGCCACGGAAGGAA
CAACAGCAACAACCCATGGTGGACGCGCTCACGATGCCTCCGCCGACGCC
CGCGGGTCCTGTGACCACCCCCGCCCCCGCGCCGGCCCCAGGACCGACGC
TACCGAGCTATCAGGAAGCAAGAAGGCAATTCCAGCAGGAGCAGGAGCGG
CAGCACCAGCACCAGGAGCACGGGCGCCACGTCGCTGGTCCCTCAACATC
AGCCACACCACGCATGGAGCTGAGGAACCCCATCAGCGAAAAGATCAAGA
CGACAGCTGCTGCTCGTCGGTCGCCCGCCGGTACTAAAAGGGCTAAAAAC
GGAGTCTCCGACGAGACGCTTAACGGGAGGAGGGGGGGCTCGGGACATAG
CTCGCGAAGAGGAAGGGCGGCGGTTATGCGGACGGCGGCGAGCTTGGCGC
CGAGGACGCGCGTGCTGTGTCTTGACATTTTCTCCTCCGCAGTCGACGGC
GACGAGATACGACGCTGGCGTCCTGCGCAGATCGCGGAAGTCATCATGGC
AAGAGGAGAGTCATCAGAGGGAGAACTGGCTCGCGTCACGTTTGATGACG
ACAACCAGGACGGAAACCAAAGCGTGTGTCTACGTCTTAGGGACGAGTGG
AGCCGGCTAGCCCTCGCGCAGTCGCTCACCGAGGAGGAAATGCGCCGGGG
GGCGCCGCTCCTCGTCGATGCTCTAGCCGCTAGTCGGAGGCAGTTCGAAC
CCCGGCAGCCCCGCAACCGGCGGCGAGGCCAACATGGCCGGCCCGCGGGA
GCGTCGGAGGGGGGGGAGCGAGGAGTCAGACGCGCGAACGATGTCCGCGA
CAGAAGGGGTAGGACCGGCTTTTTTGCCATCGCGGAAGTCATCATGGCAA
GAGGAGAGTCATCAGAGGGAGAACTGGCTCGCGTCACGTTTGATGACGAC
AACCAGGACGGAAACCAAAGCGTGTGTCTACGTCTTAGGGACGAGTGGAG
CCGGCTAGCCCTCGCGCAGTCGCTCACCGAGGAGGAAATGCGCCGGGGGG
CGCCGCTCCTCGTCGATGCTCTAGCCGCTAGTCGGAGGCAGTTCGAACCC
CGGCAGCCCCGCAACCGGCGGCGAGGCCAACATGGCCGGCCCGCGGGAGC
GTCGGAGGGGGGGGAGCGAGGAGTCAGACGCGCGAACGATGTCCGCGACA
GAAGGGGTAGGACCGGCTTTTTTGCC
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