mRNA_P-fluviatile_contig1.268.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.268.1
Unique NamemRNA_P-fluviatile_contig1.268.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3293161..3294556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1396
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.268.1prot_P-fluviatile_contig1.268.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3293630..3294337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.554255-UTR-P-fluviatile_contig1:3293160..32936291622815269.554255-UTR-P-fluviatile_contig1:3293160..3293629Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3293161..3293629 +
1693561321.1579976-UTR-P-fluviatile_contig1:3293160..32936291693561321.1579976-UTR-P-fluviatile_contig1:3293160..3293629Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3293161..3293629 +
1622815269.5785828-UTR-P-fluviatile_contig1:3294337..32945561622815269.5785828-UTR-P-fluviatile_contig1:3294337..3294556Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3294338..3294556 +
1693561321.1814702-UTR-P-fluviatile_contig1:3294337..32945561693561321.1814702-UTR-P-fluviatile_contig1:3294337..3294556Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3294338..3294556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.568631-CDS-P-fluviatile_contig1:3293629..32943371622815269.568631-CDS-P-fluviatile_contig1:3293629..3294337Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3293630..3294337 +
1693561321.1720164-CDS-P-fluviatile_contig1:3293629..32943371693561321.1720164-CDS-P-fluviatile_contig1:3293629..3294337Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3293630..3294337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.268.1

>prot_P-fluviatile_contig1.268.1 ID=prot_P-fluviatile_contig1.268.1|Name=mRNA_P-fluviatile_contig1.268.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=236bp
MRGTPSRGPARVVESEIPGGAPVGCGGIRGDESEGSVSLVRPMYPPCGGV
VYLRSVEAVIPVSQMKTCLRAILPRREVRFWAWCAVYKYTPSGDEGGREG
DAGALWSLKMNKESRSACGAHCEQPSPSSCPPGDEVVKNSVLVCYMRRNH
TAMNQQKGRALAIAVRSLPGRCAFAQYSCVPLTPLLVALRSPFPESSPSC
ASLSFSMEILLSGFFSSHARLSMIPGPLLWGRPKI*
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mRNA from alignment at P-fluviatile_contig1:3293161..3294556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.268.1 ID=mRNA_P-fluviatile_contig1.268.1|Name=mRNA_P-fluviatile_contig1.268.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1396bp|location=Sequence derived from alignment at P-fluviatile_contig1:3293161..3294556+ (Porterinema fluviatile SAG_2381)
GGCTCGAGCTCCACGACAGCCCCATCACAGCAGGGGCAGGGATTGGCAGC
GGCTGGTGGTTGGGGGCTCTCCGACATGTCCGGTCTCAGCGCAGGGTTGC
CCATTACCTCGTTACCGTCCGCGCAGCCGCCTCAGCAGCAGGTGGGGTAT
TCTAGCGACCCGTTCGCGCAACCGCAACCTCAAGCATTTCCCCCTCAGGC
GGGCGGGAGGGGGTCGTCTTCCTCTGGTGGAAACAAGTCGTCCGCCACGG
TGAACGACTTGCTCGACGGCTTGTTTTGAGGAGGGGGCAAGGTTGGGGGC
GCGTGGAATTTAGCATTATTCCGGCCCCTGAACGAGAGCGAAAGCGTTCG
GTAAAAGGGGAGATGGCGAGCGGGGTGGAAATTGTATGACCAAACCACGC
GTTTAGTGTGACCAGATTGGGCTAATGTCGGGCTAATGTGAGCAGTTTGG
GATAGTTTCATCTCCATCGATGAGAGGAACCCCATCTCGGGGCCCGGCTC
GCGTGGTGGAGAGCGAGATTCCCGGCGGAGCGCCGGTGGGTTGCGGCGGG
ATACGCGGCGACGAAAGTGAAGGATCGGTTTCATTGGTTCGACCGATGTA
TCCCCCATGTGGTGGAGTCGTTTATCTTCGGTCAGTCGAGGCAGTGATTC
CGGTCTCACAGATGAAAACATGCCTGCGCGCTATTTTGCCGCGGCGGGAG
GTTCGTTTTTGGGCTTGGTGTGCAGTTTACAAATACACGCCATCTGGAGA
CGAGGGCGGTCGGGAAGGAGACGCGGGAGCATTGTGGTCGTTGAAAATGA
ATAAAGAGAGCCGATCGGCGTGTGGAGCGCACTGCGAGCAGCCCTCGCCT
TCCTCGTGCCCTCCTGGTGATGAAGTAGTGAAAAATTCTGTGCTGGTATG
CTACATGAGACGGAACCACACAGCAATGAACCAGCAGAAGGGCCGCGCTC
TAGCAATAGCCGTGCGCTCATTACCCGGCCGCTGTGCATTTGCTCAATAT
TCTTGTGTTCCCCTAACTCCGCTTCTCGTGGCTTTACGTTCTCCCTTTCC
GGAATCATCGCCCTCTTGTGCCTCACTTTCATTTTCGATGGAAATTCTGC
TCTCTGGCTTTTTCAGCAGCCACGCTCGTCTCTCGATGATTCCCGGTCCT
CTTCTATGGGGCAGACCTAAAATATAATTCGAACCATGAATTGGCTGAGT
ATGGGGCGGCGAGTAGGGGTTCGATGCTGCAACAGAGGGAGGAAAACAGC
GCTTGCACGAGAAAGAGAGAGAGAGGGTGGCTACTCCCACTCGATTCAAA
CGGTCAAGCGATGCAATTGTCTGGTTTGATAGGTGCAATGTGCCGCTGTG
TTCTTCCTTCGCGGTGGCCGACTCCTCTTTTGTTTTGCGATGCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3293161..3294556+

>mRNA_P-fluviatile_contig1.268.1 ID=mRNA_P-fluviatile_contig1.268.1|Name=mRNA_P-fluviatile_contig1.268.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1416bp|location=Sequence derived from alignment at P-fluviatile_contig1:3293161..3294556+ (Porterinema fluviatile SAG_2381)
ATGAGAGGAACCCCATCTCGGGGCCCGGCTCGCGTGGTGGAGAGCGAGAT
TCCCGGCGGAGCGCCGGTGGGTTGCGGCGGGATACGCGGCGACGAAAGTG
AAGGATCGGTTTCATTGGTTCGACCGATGTATCCCCCATGTGGTGGAGTC
GTTTATCTTCGGTCAGTCGAGGCAGTGATTCCGGTCTCACAGATGAAAAC
ATGCCTGCGCGCTATTTTGCCGCGGCGGGAGGTTCGTTTTTGGGCTTGGT
GTGCAGTTTACAAATACACGCCATCTGGAGACGAGGGCGGTCGGGAAGGA
GACGCGGGAGCATTGTGGTCGTTGAAAATGAATAAAGAGAGCCGATCGGC
GTGTGGAGCGCACTGCGAGCAGCCCTCGCCTTCCTCGTGCCCTCCTGGTG
ATGAAGTAGTGAAAAATTCTGTGCTGGTATGCTACATGAGACGGAACCAC
ACAGCAATGAACCAGCAGAAGGGCCGCGCTCTAGCAATAGCCGTGCGCTC
ATTACCCGGCCGCTGTGCATTTGCTCAATATTCTTGTGTTCCCCTAACTC
CGCTTCTCGTGGCTTTACGTTCTCCCTTTCCGGAATCATCGCCCTCTTGT
GCCTCACTTTCATTTTCGATGGAAATTCTGCTCTCTGGCTTTTTCAGCAG
CCACGCTCGTCTCTCGATGATTCCCGGTCCTCTTCTATGGGGCAGACCTA
AAATATAAATGAGAGGAACCCCATCTCGGGGCCCGGCTCGCGTGGTGGAG
AGCGAGATTCCCGGCGGAGCGCCGGTGGGTTGCGGCGGGATACGCGGCGA
CGAAAGTGAAGGATCGGTTTCATTGGTTCGACCGATGTATCCCCCATGTG
GTGGAGTCGTTTATCTTCGGTCAGTCGAGGCAGTGATTCCGGTCTCACAG
ATGAAAACATGCCTGCGCGCTATTTTGCCGCGGCGGGAGGTTCGTTTTTG
GGCTTGGTGTGCAGTTTACAAATACACGCCATCTGGAGACGAGGGCGGTC
GGGAAGGAGACGCGGGAGCATTGTGGTCGTTGAAAATGAATAAAGAGAGC
CGATCGGCGTGTGGAGCGCACTGCGAGCAGCCCTCGCCTTCCTCGTGCCC
TCCTGGTGATGAAGTAGTGAAAAATTCTGTGCTGGTATGCTACATGAGAC
GGAACCACACAGCAATGAACCAGCAGAAGGGCCGCGCTCTAGCAATAGCC
GTGCGCTCATTACCCGGCCGCTGTGCATTTGCTCAATATTCTTGTGTTCC
CCTAACTCCGCTTCTCGTGGCTTTACGTTCTCCCTTTCCGGAATCATCGC
CCTCTTGTGCCTCACTTTCATTTTCGATGGAAATTCTGCTCTCTGGCTTT
TTCAGCAGCCACGCTCGTCTCTCGATGATTCCCGGTCCTCTTCTATGGGG
CAGACCTAAAATATAA
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