mRNA_P-fluviatile_contig1.267.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.267.1
Unique NamemRNA_P-fluviatile_contig1.267.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: D8LLJ9_ECTSI (DUF1681 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ9_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 2.840e-55
Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 1
Query:  859 AADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSKMLEREGSGG 1176
            AADMTKQMWTGRMRVVQRG EAAIML+DRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKD+ERS  L+ +G GG
Sbjct:   36 AADMTKQMWTGRMRVVQRGQEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSTKLKEDGQGG 141          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A6H5K420_9PHAE (DUF1681 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K420_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.690e-54
Identity = 121/178 (67.98%), Postives = 124/178 (69.66%), Query Frame = 1
Query:  859 AADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSKMLEREGSGGDGATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKTSSRPRRSGRDRGGSNG---LTLAPPPRDTARK 1383
            AADMTKQMWTGRMRVVQRG EAAIML+DRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKD+ERS  L+    GG G   XXXXX                           SK SSRPR              LTLAPPP DTARK
Sbjct:   36 AADMTKQMWTGRMRVVQRGQEAAIMLVDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSAKLKE---GGQGGXXXXXXXGKAAAATPKVDLSLKQGEKIKISIGGGSKASSRPRXXXXXXXXXXXXXXLTLAPPPGDTARK 210          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A835YRJ0_9STRA (NECAP endocytosis associated 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ0_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.890e-29
Identity = 57/101 (56.44%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  883 WTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVER------VPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSKMLEREG 1167
            W+GR+R+VQRG +A I L ++ DGK+FAM +V +G+V++      V DSSRYFV+K+++  GRHAF+GLAF+DRN +FDFNVALQEF+KDV R   +E+ G
Sbjct:    1 WSGRLRIVQRGKDATIQLTNKTDGKIFAMSRVKEGSVDKASARALVKDSSRYFVLKVESPDGRHAFIGLAFNDRNASFDFNVALQEFQKDVAREAAMEKGG 101          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A4D9CRU7_9STRA (DUF1681 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRU7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.210e-28
Identity = 61/109 (55.96%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  856 RAADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSKMLEREGSGGDG 1182
            RA+D   ++W G +++VQ+G +AAI+L D + G LFAM  + +G+VER  DSSRYFV+K+QNA G+HAF+G+AFD+R QAFDFNVA+QE++KD ER + L R G G  G
Sbjct:   35 RASDWKDEVWQGAVKIVQKGLDAAIVLTDPKTGSLFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERL-RTGVGAGG 142          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A1Z5JP51_FISSO (DUF1681 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP51_FISSO)

HSP 1 Score: 114 bits (286), Expect = 1.230e-25
Identity = 49/102 (48.04%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  856 RAADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSKMLER 1161
            R AD  K++W G ++VV+RG+   I+L+D +   +FA+C V+DGAV+R  DSSRYFV+K++NA G+H FVG+AF++RN AFDFN AL++ +++ E  + + +
Sbjct:   52 RGADWDKEVWQGTLKVVERGDLTVILLVDPKKNSIFAVCPVSDGAVDRCVDSSRYFVLKVENADGKHLFVGMAFNERNDAFDFNTALEDARREKEVEQNMAK 153          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A6V2CJW3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CJW3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.640e-25
Identity = 50/106 (47.17%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  856 RAADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSKMLEREGSG 1173
            R AD   ++W G ++VV+RG+  A++L+DR  G +FA+C V +G+++R  DSSRYFV++I+NA GRH F+G+AF++RN AFDFN AL++ +++ E   M  +  SG
Sbjct:   46 RGADWKDKVWQGTVKVVERGDMTAVLLVDRTKGSIFAVCPVREGSIDRCVDSSRYFVLRIENATGRHMFIGVAFNERNDAFDFNTALEDSRREKEAELMPVKPFSG 151          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A7S2YCS3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.620e-25
Identity = 46/95 (48.42%), Postives = 74/95 (77.89%), Query Frame = 1
Query:  856 RAADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVE 1140
            R AD  +++W G ++VV+RG+   ++L+DR  G +FA+C V DGAV+R  DSSRYFV++++NA GRH ++G+AF++RN AFDFN +L++ +++ E
Sbjct:   52 RGADWDQEVWQGTLKVVERGDLTVVLLVDRTSGAIFAVCPVKDGAVDRCVDSSRYFVLRVENANGRHIYIGMAFNERNDAFDFNTSLEDSRRERE 146          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A7S3LCD2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCD2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.650e-24
Identity = 50/107 (46.73%), Postives = 82/107 (76.64%), Query Frame = 1
Query:  856 RAADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQ-GRHAFVGLAFDDRNQAFDFNVALQEFK--KDVERSKMLEREG 1167
            R AD  +++W G ++VV+RG+   I+L+DR +G +FA+C V DGAV+R  DSSRYFV++++NAQ GRH ++G+AF++RN AFDFN +L++ +  K++E + ++  +G
Sbjct:   52 RGADWDQEVWQGTLKVVERGDLTVILLVDRANGGIFAVCPVQDGAVDRCVDSSRYFVLRVENAQNGRHMYIGMAFNERNDAFDFNTSLEDSRREKEIEAAPVVVEQG 158          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A7S2WIV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WIV9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.420e-23
Identity = 47/95 (49.47%), Postives = 75/95 (78.95%), Query Frame = 1
Query:  856 RAADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVE 1140
            R AD  +++W G ++VV+RG+  A++L+D+  G +FA+C V +G+V+R  DSSRYFV++I+NA GRH F+G+AF++RN AFDFN AL++ +++ E
Sbjct:   76 RGADWKEKVWQGTVKVVERGDMTAVLLVDKGTGNIFAVCPVREGSVDRCIDSSRYFVLRIENATGRHMFIGVAFNERNDAFDFNTALEDSRRERE 170          
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Match: A0A7S2UCH3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCH3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.980e-23
Identity = 47/95 (49.47%), Postives = 73/95 (76.84%), Query Frame = 1
Query:  856 RAADMTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVE 1140
            R  D  +++W G ++VV+R +  A++L+DR  G +FA+C V +GAV+R  DSSRYFV++I+NA GRH F+G+AF++RN AFDFN AL++ +++ E
Sbjct:   55 RGGDWKEKVWQGTVKVVERADMTAVILVDRTSGAIFAVCPVKEGAVDRCIDSSRYFVLRIENANGRHGFIGIAFNERNDAFDFNTALEDSRRERE 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ9_ECTSI2.840e-5591.51DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K420_9PHAE2.690e-5467.98DUF1681 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YRJ0_9STRA2.890e-2956.44NECAP endocytosis associated 2 (Fragment) n=1 Tax=... [more]
A0A4D9CRU7_9STRA1.210e-2855.96DUF1681 domain-containing protein n=2 Tax=Monodops... [more]
A0A1Z5JP51_FISSO1.230e-2548.04DUF1681 domain-containing protein n=2 Tax=Fistulif... [more]
A0A6V2CJW3_9STRA3.640e-2547.17Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2YCS3_9STRA8.620e-2548.42Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3LCD2_9STRA2.650e-2446.73Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2WIV9_9STRA1.420e-2349.47Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2UCH3_9STRA1.980e-2349.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3289383..3293006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue2.3e-46
Seed eggNOG ortholog2880.D8LLJ9
Preferred nameNECAP1
KEGG koko:K04554,ko:K11673,ko:K12608,ko:K20069
KEGG Pathwayko03018,ko04120,ko04141,ko05012,map03018,map04120,map04141,map05012
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005905,GO:0006810,GO:0006897,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030659,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0051179,GO:0051234,GO:0055085,GO:0061024,GO:0071840,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805
EggNOG free text desc.endocytosis
EggNOG OGsKOG2500@1,KOG2500@2759
EC2.3.2.23
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdaptin ear-binding coat-associated protein 1 NECAP-1
Ec32 orthologEc-04_005560.1
Exons4
Model size1661
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.267.1prot_P-fluviatile_contig1.267.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3290250..3292986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815314.698658-UTR-P-fluviatile_contig1:3289382..32902491622815314.698658-UTR-P-fluviatile_contig1:3289382..3290249Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3289383..3290249 +
1693561479.0058298-UTR-P-fluviatile_contig1:3289382..32902491693561479.0058298-UTR-P-fluviatile_contig1:3289382..3290249Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3289383..3290249 +
1622815314.7557292-UTR-P-fluviatile_contig1:3292986..32930061622815314.7557292-UTR-P-fluviatile_contig1:3292986..3293006Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3292987..3293006 +
1693561479.290403-UTR-P-fluviatile_contig1:3292986..32930061693561479.290403-UTR-P-fluviatile_contig1:3292986..3293006Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3292987..3293006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815314.7104018-CDS-P-fluviatile_contig1:3290249..32903261622815314.7104018-CDS-P-fluviatile_contig1:3290249..3290326Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3290250..3290326 +
1693561479.2421136-CDS-P-fluviatile_contig1:3290249..32903261693561479.2421136-CDS-P-fluviatile_contig1:3290249..3290326Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3290250..3290326 +
1622815314.7207124-CDS-P-fluviatile_contig1:3291034..32912201622815314.7207124-CDS-P-fluviatile_contig1:3291034..3291220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3291035..3291220 +
1693561479.2541907-CDS-P-fluviatile_contig1:3291034..32912201693561479.2541907-CDS-P-fluviatile_contig1:3291034..3291220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3291035..3291220 +
1622815314.7315662-CDS-P-fluviatile_contig1:3291920..32920831622815314.7315662-CDS-P-fluviatile_contig1:3291920..3292083Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3291921..3292083 +
1693561479.2729492-CDS-P-fluviatile_contig1:3291920..32920831693561479.2729492-CDS-P-fluviatile_contig1:3291920..3292083Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3291921..3292083 +
1622815314.7442195-CDS-P-fluviatile_contig1:3292638..32929861622815314.7442195-CDS-P-fluviatile_contig1:3292638..3292986Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3292639..3292986 +
1693561479.2829454-CDS-P-fluviatile_contig1:3292638..32929861693561479.2829454-CDS-P-fluviatile_contig1:3292638..3292986Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3292639..3292986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.267.1

>prot_P-fluviatile_contig1.267.1 ID=prot_P-fluviatile_contig1.267.1|Name=mRNA_P-fluviatile_contig1.267.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=258bp
MTKQMWTGRMRVVQRGNEAAIMLIDRRDGKLFAMCKVADGAVERVPDSSR
YFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDVERSKMLEREG
SGGDGATNSGDGDGSGEPPAPKVDLSLKQGEKIKISIGVGSKTSSRPRRS
GRDRGGSNGLTLAPPPRDTARKPGGGIGLLAPPPGDTRRARSGSGVGQKA
AAPIPSPAPVPAAGGTAFSQPPGGGGGCGDGCEAPAAATATMPDSPAMSQ
FPGGMGV*
back to top

mRNA from alignment at P-fluviatile_contig1:3289383..3293006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.267.1 ID=mRNA_P-fluviatile_contig1.267.1|Name=mRNA_P-fluviatile_contig1.267.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3624bp|location=Sequence derived from alignment at P-fluviatile_contig1:3289383..3293006+ (Porterinema fluviatile SAG_2381)
GAGATCGTGGAGCACACGTTGACGCAAATTCAAGAGTGCTACTTGTTCGA GCTGCCCCCGCGAGTCAGGGCGCAAGGATGGCTGTACGTGGGCGTCCTTT TTGAGACCAGTCGTTGCACATTTCTGTTGTCCTTGTAATACCCGTCACGA GGCAGTCGTCAACATGCAAGGTCTTTTGAACGGCCTTTCTCTTGAGAGCA CGTGCTTTCCTTCGCTCAATATGGTAGTAAGTTGAATGCGCCGCTCATTC CGAGACGTTGCCCCGCCGCCGCTACTTTTTCAACACGGTGATCTCAGTAT GTTCCGGCCCTAGGGTTCCGTTTGCTACAGTTCTCGAGTTCATCTCGCAT ACCCCTGCTGCCGAAGCTACTGCCGTTGGCACCAGGCACAAACGCACCGG TTCGGCGTGTTTTGACGCGGTCCCGGGCAGCGTGGGGCCTGCCTCGCGAT CAAGCGCGGCCACCCCCTTTCTCTCCCTCAAGTAGGCATGGAAATTATCT CGCATTCCAAGGGCAGTTCTTGGCTGCCTACTGACTTGCTTGCTTGCTTG CGTGGTCATTCGCTTGCTTCTGGGAAAGAACATAGTCTAAATTCGTTGCT TCGCCCGGGTGACCTGCTTCCTCGCTGTTCCACGGATCAATTGAGCTCTA CGTGGTCCCAGCCGGCCGTCGTTTCTAAACGCTCCAATCGTTGCCTCCCC GCACTGCCCACGCGTTGGCCTCGTTGCTGCCGCGTGCATGCCTGGTCTAG CTTCGCCTTCCCCTCCCCGCGCCCCCTGCTCTTTGTGCCGCGTGTACGTT ACGTCGTTTGCTGGGCAATGACAAATGTCTTTCGGTGTCTTCTCTCTCTC TCTCCAGGGCTGCTGATATGACGAAGCAGATGTGGACGGGGCGGATGAGG GTGGTGCAAAGAGGAAATGAGGCCGCCATCATGCTCATCGATAGGTAGGA TCAGAGGATGTTAGGGCAGGTATCGTGCCCGCCACCTTTTTTGCCTTTCG TTTCTGCGACAAGATCTGTGAATGGCGACGTGTCTGTCGACGTTATCGTA CGACTGTGTTGTGGATCGAGCTCGCTGTAATACTGCTGCTGTAGTTTTGC TCTCGCGGAGCGGTCGCGTCGAGTCTCTTGCTCCAAAGTTGCTGCGGAAG TGCTGCTACCTCTTTGCTACCGCGCGTTCGGTCGGGCCGGCCTCTTGAAA ACTCTCAATGTTGCGTTGTTTGCGCGGATTTTGGCGATGCGGATAGCGAC GAGCTTTGCAAAAGCAGACCCGGCAGACCAGGAGACCATCGATGCCCATC GAATTTTGAGGTTGCACAAGGGAGCGCGCATACATCACCTCCGTGCTCGT GTTGCTTGTTTGTTTTCGGACTGAGTCAGCCCTGGCGATGACAGGGCTGA ATCTGGGTGCAGGCCTCTCGCGACGTGTGTGCATTTTGTAGACACTAGCG GTCCGCAAACGGCAATGCCCCCCCCCCCCCCCTTTCGCGTAAACTACACC AACACCCGCCGTCAGCGTGCGTTGTAGTGTGCGTGAGTTCGTGTGCTATG TGATCGAATCACGTGCTCTTTACCTCGAAGCAACCTTCCCCCTCGCCCCT TCATAATTTCACCAATCATGCTTTAAAAATCAAAACGAATGAATGGAAAC AGACGGGACGGTAAGCTGTTCGCGATGTGCAAGGTGGCGGACGGGGCGGT GGAGCGCGTACCGGACAGCAGTCGCTACTTCGTGATAAAGATCCAGAACG CCCAGGGCCGACACGCCTTCGTCGGGCTTGCGTTCGACGACCGCAACCAG GCCTTCGACTTTAATGTCGCCCTCCAGGAGTTCAAGAAGTGAGTGGGGTT GGATGGAAGGGGGCAGGGGGGAGGGGAGAGGGGGGAGAGGGGCGGGGAGA AAGCGGGGGGTGGGGTGTACTCGTAGATATGCATGCATGCATGCCGTGGT TGTCAGACGATTGGCCTGGGGGAGGGGGGAGGGCGGAGGGCTTGGTGTGT CTGGGCAAGATCATGCCAGGCCGGAATGTGGCGACAGGCGGCAGATCTCG TTCGCTCATGCTGGAAAGCCGGGGCGGATGACGGAAGCGCCGCCCGTTGT TCAGCAGCTCTGATGGAAAGTGCGAGCTGGAGCCGGCCGGGACTTGGTTT CGGGGTATTGCCTTATCACCGACTTTCACAAGTATCTGAACGTTGTCTTT TCTCAAGACTGGAAGGGTCGAGTATGTTTCAGGAGAAAAACCCGCACTAT TGTTGGGGACGGGCGGGACTGAGCGCTCTTGCACGCACTTGCTTTTGCGT GATTACTTGCTCGCGTACCTTGTTTCATGTTGTCGGCGGCTTGTGATGGT GGATGGCATTGACCTAGGTTTTGGCGTTCCAGGATAGAATATATTTCCGG CGTGACAGCGGAGTGAGCCCCCATATGTCAGCCATCGCCTTCCTACTTAC CCCGCCCCCCCTCTCATCTCTGCTCTATATTTCCCCTCCGTTGTGACGCC TCGTGCGCTGGCTGCGAAATGTCACACACACCGAGCAGAGACGTCGAGCG GAGCAAGATGCTGGAGAGGGAAGGGTCGGGGGGGGACGGCGCCACCAACT CAGGCGACGGGGATGGGAGCGGGGAACCACCTGCGCCGAAGGTCGATCTG TCCCTCAAGCAGGGCGAGAAGATCAAGATCAGCATCGGGGTTGGCTCGAA GGTCAGCAGCCGTCAGGATGGGGGCGGGGGTAAATTTCCTGGTACTGAGG AAGATCGCCCTTTATCTACGGAATTCTTGCTCGGTGCTTGTTGATCCACT GTTTGCCGTGGCGGCACTTTCCTCTGCTGCACCGCAAATGCAGCTGCTAC TGCGCCAGCGCTGGTTCAGTCTTTAGGCAGGGCAGCAGCCGTCGTCATGT TTTGACTAATGGCATGCCAAACATAACGCCACCGATTCAGCGTCTCGCCC AGCTTGTGCTTACCTCGCTAGACACTGCGACGTCCTCTACTTGAAAGCTG GCCTCACGTGTAGTGTTCCCTCCCTCGCAATTCCACAGCTACAAGACCGC TCCTGAGGCGAAAACGCGCAATCGAGAACGTCTACCCTGTTCCTCGGCAG CCGCCCTACATGTTGATTGCCGCTTTGATCCCCAATTCATCCCCTTCGTC TACTCTTTTTGCTGGTCTTCTGAAGTGAAAATCATCGTTCATTGCCTCTT CTATCCCCCGAAATTCCTTTCTTTCCTTTCTTGTTTTTTGCTCTCTTCCA CGCAAGACTTCTTCTCGCCCCCGGAGATCAGGGCGAGACCGTGGCGGCAG CAATGGGCTCACCCTCGcccccccCCCCCGGGACACGGCGCGAAAACCCG GCGGAGGAATCGGCCTGCTCGCGCCCCCACCGGGGGACACCCGGCGCGCC CGAAGTGGCTCGGGGGTCGGTCAAAAGGCGGCAGCACCGATACCGTCACC GGCACCGGTCCCGGCGGCAGGAGGGACGGCGTTCTCTCAGCCCCCCGGCG GCGGCGGCGGCTGCGGCGACGGGTGTGAGGCTCCGGCGGCGGCCACCGCT ACCATGCCCGATTCGCCGGCGATGTCTCAGTTCCCCGGCGGGATGGGGGT ATGATGATGCCGACACCGACGAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:3289383..3293006+

>mRNA_P-fluviatile_contig1.267.1 ID=mRNA_P-fluviatile_contig1.267.1|Name=mRNA_P-fluviatile_contig1.267.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1548bp|location=Sequence derived from alignment at P-fluviatile_contig1:3289383..3293006+ (Porterinema fluviatile SAG_2381)
ATGACGAAGCAGATGTGGACGGGGCGGATGAGGGTGGTGCAAAGAGGAAA
TGAGGCCGCCATCATGCTCATCGATAGATGACGAAGCAGATGTGGACGGG
GCGGATGAGGGTGGTGCAAAGAGGAAATGAGGCCGCCATCATGCTCATCG
ATAGACGGGACGGTAAGCTGTTCGCGATGTGCAAGGTGGCGGACGGGGCG
GTGGAGCGCGTACCGGACAGCAGTCGCTACTTCGTGATAAAGATCCAGAA
CGCCCAGGGCCGACACGCCTTCGTCGGGCTTGCGTTCGACGACCGCAACC
AGGCCTTCGACTTTAATGTCGCCCTCCAGGAGTTCAAGAAACGGGACGGT
AAGCTGTTCGCGATGTGCAAGGTGGCGGACGGGGCGGTGGAGCGCGTACC
GGACAGCAGTCGCTACTTCGTGATAAAGATCCAGAACGCCCAGGGCCGAC
ACGCCTTCGTCGGGCTTGCGTTCGACGACCGCAACCAGGCCTTCGACTTT
AATGTCGCCCTCCAGGAGTTCAAGAAAGACGTCGAGCGGAGCAAGATGCT
GGAGAGGGAAGGGTCGGGGGGGGACGGCGCCACCAACTCAGGCGACGGGG
ATGGGAGCGGGGAACCACCTGCGCCGAAGGTCGATCTGTCCCTCAAGCAG
GGCGAGAAGATCAAGATCAGCATCGGGGTTGGCTCGAAGAGACGTCGAGC
GGAGCAAGATGCTGGAGAGGGAAGGGTCGGGGGGGGACGGCGCCACCAAC
TCAGGCGACGGGGATGGGAGCGGGGAACCACCTGCGCCGAAGGTCGATCT
GTCCCTCAAGCAGGGCGAGAAGATCAAGATCAGCATCGGGGTTGGCTCGA
AGACTTCTTCTCGCCCCCGGAGATCAGGGCGAGACCGTGGCGGCAGCAAT
GGGCTCACCCTCGcccccccCCCCCGGGACACGGCGCGAAAACCCGGCGG
AGGAATCGGCCTGCTCGCGCCCCCACCGGGGGACACCCGGCGCGCCCGAA
GTGGCTCGGGGGTCGGTCAAAAGGCGGCAGCACCGATACCGTCACCGGCA
CCGGTCCCGGCGGCAGGAGGGACGGCGTTCTCTCAGCCCCCCGGCGGCGG
CGGCGGCTGCGGCGACGGGTGTGAGGCTCCGGCGGCGGCCACCGCTACCA
TGCCCGATTCGCCGGCGATGTCTCAGTTCCCCGGCGGGATGGGGGTATGA
ACTTCTTCTCGCCCCCGGAGATCAGGGCGAGACCGTGGCGGCAGCAATGG
GCTCACCCTCGcccccccCCCCCGGGACACGGCGCGAAAACCCGGCGGAG
GAATCGGCCTGCTCGCGCCCCCACCGGGGGACACCCGGCGCGCCCGAAGT
GGCTCGGGGGTCGGTCAAAAGGCGGCAGCACCGATACCGTCACCGGCACC
GGTCCCGGCGGCAGGAGGGACGGCGTTCTCTCAGCCCCCCGGCGGCGGCG
GCGGCTGCGGCGACGGGTGTGAGGCTCCGGCGGCGGCCACCGCTACCATG
CCCGATTCGCCGGCGATGTCTCAGTTCCCCGGCGGGATGGGGGTATGA
back to top