mRNA_P-fluviatile_contig1.266.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.266.1
Unique NamemRNA_P-fluviatile_contig1.266.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3279311..3280497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size743
Cds size618
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.266.1prot_P-fluviatile_contig1.266.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3279434..3280497 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.8950517-UTR-P-fluviatile_contig1:3279310..32794331622815265.8950517-UTR-P-fluviatile_contig1:3279310..3279433Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3279311..3279433 +
1693561296.3269458-UTR-P-fluviatile_contig1:3279310..32794331693561296.3269458-UTR-P-fluviatile_contig1:3279310..3279433Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3279311..3279433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.9073133-CDS-P-fluviatile_contig1:3279433..32799341622815265.9073133-CDS-P-fluviatile_contig1:3279433..3279934Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3279434..3279934 +
1693561296.703867-CDS-P-fluviatile_contig1:3279433..32799341693561296.703867-CDS-P-fluviatile_contig1:3279433..3279934Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3279434..3279934 +
1622815265.919278-CDS-P-fluviatile_contig1:3280380..32804971622815265.919278-CDS-P-fluviatile_contig1:3280380..3280497Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3280381..3280497 +
1693561297.131473-CDS-P-fluviatile_contig1:3280380..32804971693561297.131473-CDS-P-fluviatile_contig1:3280380..3280497Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3280381..3280497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.266.1

>prot_P-fluviatile_contig1.266.1 ID=prot_P-fluviatile_contig1.266.1|Name=mRNA_P-fluviatile_contig1.266.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=206bp
MCGRTRGSRPSGEAAAEPGKRRRSADVEAGSTNLGPRRGRSADNAQHAKG
SDAGEGQRARRTASKAPETSASAEDVASGAAAILALSHSNEARGASATSS
NQPSPRGRRGAPRACSPSPGTWASSSPNRTREASGPPDASRSQTSIIEVQ
ARLPGFPDNRGAESPQQQVPPDGHPPLAAKRRRIQGVSGAANSNGSGGGS
RELTNS
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mRNA from alignment at P-fluviatile_contig1:3279311..3280497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.266.1 ID=mRNA_P-fluviatile_contig1.266.1|Name=mRNA_P-fluviatile_contig1.266.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1187bp|location=Sequence derived from alignment at P-fluviatile_contig1:3279311..3280497+ (Porterinema fluviatile SAG_2381)
TCATCGAGTATACTCTACTCAGTATCAAAAAAGTATGGTGCGTAGGCCCC
GGATTTTAAAAAAATACAGCAGAGAACCCCTTCCGACACAACTCTTCTCT
GGGAAAGGAGAGGTAGCAAGAGCATGTGTGGCCGTACCAGAGGCTCAAGA
CCCAGTGGGGAGGCTGCTGCCGAGCCAGGCAAGCGACGTAGGAGCGCGGA
TGTTGAGGCGGGGTCCACAAACTTAGGGCCTCGGAGGGGGAGGTCTGCTG
ACAACGCACAGCACGCGAAAGGATCAGACGCCGGTGAGGGTCAGCGCGCG
CGTCGCACTGCGAGCAAAGCCCCTGAGACTTCGGCGTCAGCAGAGGACGT
AGCAAGTGGGGCAGCAGCCATCCTAGCCTTGAGCCACAGCAACGAGGCGC
GGGGTGCGTCCGCGACGAGCTCAAATCAGCCGTCACCTAGGGGGCGTAGG
GGCGCCCCGCGTGCATGTTCACCGTCGCCTGGGACATGGGCGTCGTCCTC
TCCCAACCGGACGAGGGAAGCCTCAGGGCCTCCCGACGCCTCGCGGTCGC
AGACTTCGATCATAGAGGTCCAGGCACGTCTACCCGGCTTCCCAGATAAT
CGTGGCGCGGAGTCTCCACAGCAGGTGCGAGGTCATTTTTTCGTTGGGTT
AGCCTGTGCGAGCGATCACCACTGCTGTTGTCACAAGCACGCATGTGCTG
ACAAGCTACATCAGGGGTATGTAGGGTTACGGCTAGATGTCGACAGCTTC
GTGTGTGCACCACATATAGGGCTAGGGTTTGGGTGAGGCGCAGTGATGCT
ATTGCCACCCAACGAAAACTTAGGCACAACTATAGACTGGCCACCGGGCA
TTTCCCCTACCCAAAAAGAGAGAGCTCCAGAGGTTAAACTTAAGGGGTTG
GGGTTGTGACACCCGCCGCCGTGGTTCGGTGTTTCTTACGCCGATCGAAG
AATATCAACACGAGTTTTACCCTCTGAGTTCAAACCTTACACGAAAAAAG
CGACGGGGGTTGGGGTCTAGTTCTTTGGCCCAGAAGTCCATACTTAGAAT
CTTTGCGCGGCTTCCAACAGCAGGTTCCCCCGGACGGCCATCCACCCTTG
GCGGCGAAAAGACGGAGAATCCAAGGAGTGTCTGGAGCGGCCAATAGTAA
TGGCAGCGGAGGCGGCAGCAGGGAACTAACGAACAGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3279311..3280497+

>mRNA_P-fluviatile_contig1.266.1 ID=mRNA_P-fluviatile_contig1.266.1|Name=mRNA_P-fluviatile_contig1.266.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1236bp|location=Sequence derived from alignment at P-fluviatile_contig1:3279311..3280497+ (Porterinema fluviatile SAG_2381)
ATGTGTGGCCGTACCAGAGGCTCAAGACCCAGTGGGGAGGCTGCTGCCGA
GCCAGGCAAGCGACGTAGGAGCGCGGATGTTGAGGCGGGGTCCACAAACT
TAGGGCCTCGGAGGGGGAGGTCTGCTGACAACGCACAGCACGCGAAAGGA
TCAGACGCCGGTGAGGGTCAGCGCGCGCGTCGCACTGCGAGCAAAGCCCC
TGAGACTTCGGCGTCAGCAGAGGACGTAGCAAGTGGGGCAGCAGCCATCC
TAGCCTTGAGCCACAGCAACGAGGCGCGGGGTGCGTCCGCGACGAGCTCA
AATCAGCCGTCACCTAGGGGGCGTAGGGGCGCCCCGCGTGCATGTTCACC
GTCGCCTGGGACATGGGCGTCGTCCTCTCCCAACCGGACGAGGGAAGCCT
CAGGGCCTCCCGACGCCTCGCGGTCGCAGACTTCGATCATAGAGGTCCAG
GCACGTCTACCCGGCTTCCCAGATAATCGTGGCGCGGAGTCTCCACAGCA
GATGTGTGGCCGTACCAGAGGCTCAAGACCCAGTGGGGAGGCTGCTGCCG
AGCCAGGCAAGCGACGTAGGAGCGCGGATGTTGAGGCGGGGTCCACAAAC
TTAGGGCCTCGGAGGGGGAGGTCTGCTGACAACGCACAGCACGCGAAAGG
ATCAGACGCCGGTGAGGGTCAGCGCGCGCGTCGCACTGCGAGCAAAGCCC
CTGAGACTTCGGCGTCAGCAGAGGACGTAGCAAGTGGGGCAGCAGCCATC
CTAGCCTTGAGCCACAGCAACGAGGCGCGGGGTGCGTCCGCGACGAGCTC
AAATCAGCCGTCACCTAGGGGGCGTAGGGGCGCCCCGCGTGCATGTTCAC
CGTCGCCTGGGACATGGGCGTCGTCCTCTCCCAACCGGACGAGGGAAGCC
TCAGGGCCTCCCGACGCCTCGCGGTCGCAGACTTCGATCATAGAGGTCCA
GGCACGTCTACCCGGCTTCCCAGATAATCGTGGCGCGGAGTCTCCACAGC
AGCAGGTTCCCCCGGACGGCCATCCACCCTTGGCGGCGAAAAGACGGAGA
ATCCAAGGAGTGTCTGGAGCGGCCAATAGTAATGGCAGCGGAGGCGGCAG
CAGGGAACTAACGAACAGCCAGGTTCCCCCGGACGGCCATCCACCCTTGG
CGGCGAAAAGACGGAGAATCCAAGGAGTGTCTGGAGCGGCCAATAGTAAT
GGCAGCGGAGGCGGCAGCAGGGAACTAACGAACAGC
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