mRNA_P-fluviatile_contig1.265.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.265.1
Unique NamemRNA_P-fluviatile_contig1.265.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.265.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 6.780e-64
Identity = 183/498 (36.75%), Postives = 241/498 (48.39%), Query Frame = 1 
Query:    4 WLPPLLSAPVPAKSA--------GAKATAKRVADLWNSRAGPMYFMLRGGHDSRAGLDMDRLKMITRKEAHITQQGSDQICGLREI*IEHFFPPVSAGVAPSAMPADAHLSSFILVFTKAVQYGMDNAADICIERAQTWERALEAVAKKLSSYLRNHFTLLLPHGTQARDLLLEAINDGLNEGFHVLDKLAAELHRRHADGPPAHDTVDIVPIPVFKRLNILLDPDSANSLEERATNWSAP-------PAVAGTKRKATAAPGKAAGSKQTAASRLPPVLAGFCKGFWHGSACRRNNCEFAHVDGRTFTANQSAVAPMQPQQPQLLRQPAQQQLQFHPQPLTPLQSAQLLPPQXXXXXXXXXXXXXXXXXXGGGGARPTGVANYSRMVNGGRGGGANPGRGAGGRGN*QLGLCPTVEPTEGEGREPGRAGILFADATRSLGPSGAPLPGSVSPALFHGENIMLTSSTTCV------NRVPSNSLPQYELSESRIPVES 1434
            +LPP+ +APV A SA        G+K T K  A+ W +  GP++ + RGG D+RA +D+  +KM+  + +HIT+QG  Q+C L +I IEH FPP SA  A +AMP   H  +FI V  K ++YGMD A +    R   W     ++ +KL++YL  H+T L PH  + R++LL+AIN GL +GF +L K+A +L   H DGPP  D  D VP P FK L  LL+ D   SL E+A  W  P       PA +  ++  TA    A           P    GFCKG+W    CR  +C+  HV     +A  +                                        XXXXXXXXXXXXXXXXXX     R   V N+S  V+GGRG                                   AG  FAD  RS+GP  AP PGSVSPALFHGE + L++S          +  PS S    +++ESR PV S
Sbjct:  157 FLPPV-NAPVVAASAAPPAPATAGSKMTEKMRAEDWKA-TGPLWLLARGGFDTRAPVDVPFVKMVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAALAAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFPRFKLLKTLLEEDHTQSLAEKAAQWPLPTVAAALAPATSAKRKSGTAGAKTATXXXXXXXXXXPTCPPGFCKGWWFSRQCRIPDCQLHHVHAGPASATSAXXX-----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQPSVGNFSMTVHGGRGXXXXXXX--------XXXXXXXXXXXXXXXXXXXHAGTWFADVARSVGPRDAPTPGSVSPALFHGEQLKLSNSGRAARYRWTNHTNPSGSSTNLDVAESRPPVRS 615
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BLAST of mRNA_P-fluviatile_contig1.265.1 vs. uniprot
Match: A0A6H5L341_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L341_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.130e-59
Identity = 121/303 (39.93%), Postives = 167/303 (55.12%), Query Frame = 1 
Query:    4 WLPPLLSAPVPAKSA--------GAKATAKRVADLWNSRAGPMYFMLRGGHDSRAGLDMDRLKMITRKEAHITQQGSDQICGLREI*IEHFFPPVSAGVAPSAMPADAHLSSFILVFTKAVQYGMDNAADICIERAQTWERALEAVAKKLSSYLRNHFTLLLPHGTQARDLLLEAINDGLNEGFHVLDKLAAELHRRHADGPPAHDTVDIVPIPVFKRLNILLDPDSANSLEERATNWSAP-------PAVAGTKRKATAAPGKAAGSKQTAASRLPPVLAGFCKGFWHGSACRRNNCEFAHV 867
            +LPP+ +APV A SA        G+K T K  A+ W +  GP++ + RGG D+RA +D+  +KM+  + +HIT+QG  Q+C L +I IEH FPP SA  A +AMP   H  +FI V  K ++YGMD A +    R   W     ++ +KL++YL  H+T L PH  + R++LL+AIN GL +GF +L K+A +L   H DGPP  D  D VP P FK L  LL+ D   SL E+A  W  P       PA +  ++  TA    A           P    GFCKG+W    CR  +C+  HV
Sbjct:  165 FLPPV-NAPVVAASAAPPAPATAGSKMTEKMRAEDWKA-TGPLWLLARGGFDTRAPVDVPFVKMVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAALAAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFPRFKLLKTLLEEDHTQSLAEKAAQWPLPTVAAALAPATSAKRKSGTAGAKTATXXXXXXXXXXPTCPPGFCKGWWFSRQCRIPDCQLHHV 465
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BLAST of mRNA_P-fluviatile_contig1.265.1 vs. uniprot
Match: A0A6H5JUF5_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.040e-37
Identity = 99/308 (32.14%), Postives = 150/308 (48.70%), Query Frame = 1 
Query:    7 LPPLLSA--------PVPAKSAGAKATA-KRVADLWNSRAGPMYFMLRGGHDSRAGLDMDRLKMITRKEAHITQQGSDQICGLREI*IEHFFPPVSAGVAPSAMPADAHLSSFILVFTKAVQYGMDNAADICIERAQTWERALEAVAKKLSSYLRNHFTLLLPHGTQARDLLLEAINDGLNEGFHVLDKLAAELHRRHADGPPAHDTVDIVPIPVFKRLNILLDPDSANSLEERATNWSAPPAVAGTKRKATAAPGKAAGSKQTAASRLPPVLAGFCKGFWHGSACRRNNCEFAHVDGRTFTANQSAV 903
            LPPL +A        P   + AGAK    KR    WN+   PM+F+LR   D    +D DRL ++T+++AHIT+Q +++I  L+   IEHFFP ++                                               E      ++Y +  +T   PH T+AR+ L++ +N+G++EGF+ L      L++R+ DGPPA  + D+VP P F+ L  L   + ++SL + + +W  P A A  KRKA   P  A+G+KQ+  SRL  V  G CK FW    CRR +C  AH++ R +  +   V
Sbjct:  672 LPPLAAAAAASQPNAPANGQGAGAKIIIEKRKTVYWNTTVEPMFFLLRSSEDIGPEMDEDRLALLTKQKAHITKQVAEEILSLKNCKIEHFFPSINR----------------------------------------------EGCGTATNNYPQLKYTRFAPHATEARNALVDGVNNGIDEGFYNLGLQGCALNQRYPDGPPAVGSGDVVPTPTFRPLKNLTGQEHSSSLAQNSKHWVIP-ATASNKRKAAGCPANASGTKQST-SRLGSVRGGLCKCFWQAGVCRRADCPLAHINVRNYNTHPHRV 931
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGT0_9PHAE6.780e-6436.75Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L341_9PHAE1.130e-5939.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUF5_9PHAE2.040e-3732.14C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3272840..3274338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1499
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.265.1prot_P-fluviatile_contig1.265.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3273128..3274021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.4930708-UTR-P-fluviatile_contig1:3272839..32731271622815269.4930708-UTR-P-fluviatile_contig1:3272839..3273127Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3272840..3273127 +
1693561321.0318933-UTR-P-fluviatile_contig1:3272839..32731271693561321.0318933-UTR-P-fluviatile_contig1:3272839..3273127Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3272840..3273127 +
1622815269.5223875-UTR-P-fluviatile_contig1:3274021..32743381622815269.5223875-UTR-P-fluviatile_contig1:3274021..3274338Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3274022..3274338 +
1693561321.1409402-UTR-P-fluviatile_contig1:3274021..32743381693561321.1409402-UTR-P-fluviatile_contig1:3274021..3274338Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3274022..3274338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.5076227-CDS-P-fluviatile_contig1:3273127..32740211622815269.5076227-CDS-P-fluviatile_contig1:3273127..3274021Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3273128..3274021 +
1693561321.126215-CDS-P-fluviatile_contig1:3273127..32740211693561321.126215-CDS-P-fluviatile_contig1:3273127..3274021Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3273128..3274021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.265.1

>prot_P-fluviatile_contig1.265.1 ID=prot_P-fluviatile_contig1.265.1|Name=mRNA_P-fluviatile_contig1.265.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=298bp
MPADAHLSSFILVFTKAVQYGMDNAADICIERAQTWERALEAVAKKLSSY
LRNHFTLLLPHGTQARDLLLEAINDGLNEGFHVLDKLAAELHRRHADGPP
AHDTVDIVPIPVFKRLNILLDPDSANSLEERATNWSAPPAVAGTKRKATA
APGKAAGSKQTAASRLPPVLAGFCKGFWHGSACRRNNCEFAHVDGRTFTA
NQSAVAPMQPQQPQLLRQPAQQQLQFHPQPLTPLQSAQLLPPQPPQQPQQ
QPQQQQASQAAGGGGARPTGVANYSRMVNGGRGGGANPGRGAGGRGN*
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mRNA from alignment at P-fluviatile_contig1:3272840..3274338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.265.1 ID=mRNA_P-fluviatile_contig1.265.1|Name=mRNA_P-fluviatile_contig1.265.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1499bp|location=Sequence derived from alignment at P-fluviatile_contig1:3272840..3274338+ (Porterinema fluviatile SAG_2381)
GCCTGGTTGCCCCCCCTTCTCAGCGCCCCCGTACCAGCGAAGTCCGCCGG
CGCCAAGGCTACCGCGAAGAGGGTGGCCGACCTTTGGAACTCTCGGGCGG
GGCCCATGTATTTCATGCTGCGCGGCGGCCACGACAGTCGGGCAGGTCTG
GACATGGACCGCCTCAAGATGATTACCAGGAAGGAAGCGCACATCACCCA
GCAAGGCTCGGACCAAATCTGCGGTCTGCGCGAGATCTAGATCGAACATT
TTTTCCCGCCTGTCTCTGCTGGAGTCGCGCCGTCTGCCATGCCGGCGGAT
GCGCACCTGTCCTCCTTCATTCTAGTTTTCACGAAGGCCGTACAGTACGG
CATGGACAACGCGGCCGACATATGCATCGAACGAGCCCAGACGTGGGAAC
GGGCGCTCGAGGCCGTGGCTAAAAAGCTATCCTCCTACCTCCGGAATCAC
TTTACGCTCCTCTTGCCCCACGGGACGCAGGCGCGCGACCTCCTGCTGGA
AGCCATCAATGACGGCTTGAACGAGGGTTTTCACGTCCTGGACAAACTCG
CCGCAGAGCTCCACCGGCGTCATGCCGACGGCCCCCCCGCGCACGACACG
GTGGACATCGTGCCCATCCCGGTCTTCAAGCGCCTGAACATCCTGCTCGA
TCCGGACAGTGCTAATTCTTTGGAGGAGAGGGCCACCAACTGGTCGGCCC
CCCCCGCCGTCGCCGGTACCAAACGGAAAGCCACGGCGGCCCCCGGCAAG
GCCGCAGGATCCAAACAGACGGCGGCATCTCGGCTCCCGCCGGTGCTGGC
CGGTTTCTGCAAAGGGTTCTGGCACGGGAGTGCCTGCCGTCGTAACAACT
GCGAATTCGCGCACGTGGACGGCCGCACGTTTACCGCCAATCAATCTGCC
GTCGCACCCATGCAGCCCCAGCAGCCGCAGCTGCTCCGGCAGCCGGCCCA
GCAGCAGCTGCAGTTTCACCCCCAACCCCTTACGCCGCTTCAGTCGGCCC
AGCTTCTTCCGCCGCAGCCGCCGCAACAGCCGCAACAACAGCCGCAGCAG
CAGCAGGCGTCGCAGGCAGCCGGAGGAGGAGGAGCTCGGCCCACGGGCGT
GGCCAACTACAGCAGGATGGTTAATGGTGGCCGTGGGGGGGGGGCGAACC
CGGGGCGCGGAGCCGGCGGGAGAGGCAATTGACAACTAGGGCTCTGCCCA
ACGGTAGAGCCGACAGAAGGCGAGGGGAGGGAGCCAGGACGCGCTGGTAT
CCTGTTCGCAGACGCGACGAGGTCCTTGGGGCCTAGCGGTGCGCCTTTGC
CGGGGTCAGTTTCACCGGCCCTGTTTCACGGTGAGAACATCATGCTGACT
AGTAGTACGACGTGCGTCAACCGCGTGCCGTCTAATTCGCTGCCGCAGTA
CGAGCTCTCTGAATCGCGTATCCCTGTAGAATCGGGTCCGTTTTGTCGCC
GCACTCTAGGGCCCCTTGCCCCGGACTGTCGTCACACCCCATTCCACAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3272840..3274338+

>mRNA_P-fluviatile_contig1.265.1 ID=mRNA_P-fluviatile_contig1.265.1|Name=mRNA_P-fluviatile_contig1.265.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1788bp|location=Sequence derived from alignment at P-fluviatile_contig1:3272840..3274338+ (Porterinema fluviatile SAG_2381)
ATGCCGGCGGATGCGCACCTGTCCTCCTTCATTCTAGTTTTCACGAAGGC
CGTACAGTACGGCATGGACAACGCGGCCGACATATGCATCGAACGAGCCC
AGACGTGGGAACGGGCGCTCGAGGCCGTGGCTAAAAAGCTATCCTCCTAC
CTCCGGAATCACTTTACGCTCCTCTTGCCCCACGGGACGCAGGCGCGCGA
CCTCCTGCTGGAAGCCATCAATGACGGCTTGAACGAGGGTTTTCACGTCC
TGGACAAACTCGCCGCAGAGCTCCACCGGCGTCATGCCGACGGCCCCCCC
GCGCACGACACGGTGGACATCGTGCCCATCCCGGTCTTCAAGCGCCTGAA
CATCCTGCTCGATCCGGACAGTGCTAATTCTTTGGAGGAGAGGGCCACCA
ACTGGTCGGCCCCCCCCGCCGTCGCCGGTACCAAACGGAAAGCCACGGCG
GCCCCCGGCAAGGCCGCAGGATCCAAACAGACGGCGGCATCTCGGCTCCC
GCCGGTGCTGGCCGGTTTCTGCAAAGGGTTCTGGCACGGGAGTGCCTGCC
GTCGTAACAACTGCGAATTCGCGCACGTGGACGGCCGCACGTTTACCGCC
AATCAATCTGCCGTCGCACCCATGCAGCCCCAGCAGCCGCAGCTGCTCCG
GCAGCCGGCCCAGCAGCAGCTGCAGTTTCACCCCCAACCCCTTACGCCGC
TTCAGTCGGCCCAGCTTCTTCCGCCGCAGCCGCCGCAACAGCCGCAACAA
CAGCCGCAGCAGCAGCAGGCGTCGCAGGCAGCCGGAGGAGGAGGAGCTCG
GCCCACGGGCGTGGCCAACTACAGCAGGATGGTTAATGGTGGCCGTGGGG
GGGGGGCGAACCCGGGGCGCGGAGCCGGCGGGAGAGGCAATTGAATGCCG
GCGGATGCGCACCTGTCCTCCTTCATTCTAGTTTTCACGAAGGCCGTACA
GTACGGCATGGACAACGCGGCCGACATATGCATCGAACGAGCCCAGACGT
GGGAACGGGCGCTCGAGGCCGTGGCTAAAAAGCTATCCTCCTACCTCCGG
AATCACTTTACGCTCCTCTTGCCCCACGGGACGCAGGCGCGCGACCTCCT
GCTGGAAGCCATCAATGACGGCTTGAACGAGGGTTTTCACGTCCTGGACA
AACTCGCCGCAGAGCTCCACCGGCGTCATGCCGACGGCCCCCCCGCGCAC
GACACGGTGGACATCGTGCCCATCCCGGTCTTCAAGCGCCTGAACATCCT
GCTCGATCCGGACAGTGCTAATTCTTTGGAGGAGAGGGCCACCAACTGGT
CGGCCCCCCCCGCCGTCGCCGGTACCAAACGGAAAGCCACGGCGGCCCCC
GGCAAGGCCGCAGGATCCAAACAGACGGCGGCATCTCGGCTCCCGCCGGT
GCTGGCCGGTTTCTGCAAAGGGTTCTGGCACGGGAGTGCCTGCCGTCGTA
ACAACTGCGAATTCGCGCACGTGGACGGCCGCACGTTTACCGCCAATCAA
TCTGCCGTCGCACCCATGCAGCCCCAGCAGCCGCAGCTGCTCCGGCAGCC
GGCCCAGCAGCAGCTGCAGTTTCACCCCCAACCCCTTACGCCGCTTCAGT
CGGCCCAGCTTCTTCCGCCGCAGCCGCCGCAACAGCCGCAACAACAGCCG
CAGCAGCAGCAGGCGTCGCAGGCAGCCGGAGGAGGAGGAGCTCGGCCCAC
GGGCGTGGCCAACTACAGCAGGATGGTTAATGGTGGCCGTGGGGGGGGGG
CGAACCCGGGGCGCGGAGCCGGCGGGAGAGGCAATTGA
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