mRNA_P-fluviatile_contig1.255.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.255.1
Unique NamemRNA_P-fluviatile_contig1.255.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.255.1 vs. uniprot
Match: A0A6H5L107_9PHAE (D27-like_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L107_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.610e-17
Identity = 99/246 (40.24%), Postives = 133/246 (54.07%), Query Frame = 1 
Query:  226 MASWLVL-VLVLAAQMRPTQQSR--CADPYRT--PLVPSSSPAP------AFV-GRPQLPGCKSDQLERRLRGEGSVAGTPPHVLGGGGSSIMRSRLRPKWRRRMQESMDMDGPPEVSLRDGGRKRAKAREDAHRQXXXXXXXXXARPTVELPNLQVPVDLPQPGDWLRVPELDGD--GGSP----LPLNSQISSANLKIGGXXXXXXXXXXXXXXXXXXADPFAVPDNDYADSFLDSIWINLLSN 909
            M+SWL+  +L++AAQ  PT+++   C + ++   P   SS   P      AFV G PQ    K+   ++    EG             G      R RP+ R  +Q +MD+DGPP+V+   G ++    RE+  RQ         A  TVE PN+Q P +LPQPG+WL+         GG P     PLNS++S + L      XXXXXXXXXXXXX   ADPFA PDN+Y DSF+DS+WINLLS+
Sbjct:    1 MSSWLMTPILLIAAQSLPTREASAACVEAHQAQQPAYASSRAGPSLSFPTAFVCGLPQ----KAVTRDKNRVVEGDHVSDRQRWGQRNGK-----RYRPRSRG-VQATMDVDGPPDVAS-SGAKRSVVVREEVLRQQKEGAT---AATTVEFPNVQAPTNLPQPGEWLQQXXXXXXXLGGLPPTADAPLNSRVSLSGLY---DDXXXXXXXXXXXXXVKKADPFAAPDNEYTDSFVDSLWINLLSS 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L107_9PHAE1.610e-1740.24D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3145001..3146978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-04_005770.1
Exons2
Model size912
Cds size798
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.255.1prot_P-fluviatile_contig1.255.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3145115..3146978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.903652-UTR-P-fluviatile_contig1:3145000..31451141622815312.903652-UTR-P-fluviatile_contig1:3145000..3145114Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3145001..3145114 +
1693561469.5010557-UTR-P-fluviatile_contig1:3145000..31451141693561469.5010557-UTR-P-fluviatile_contig1:3145000..3145114Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3145001..3145114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.9490452-CDS-P-fluviatile_contig1:3145114..31456781622815312.9490452-CDS-P-fluviatile_contig1:3145114..3145678Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3145115..3145678 +
1693561469.5141733-CDS-P-fluviatile_contig1:3145114..31456781693561469.5141733-CDS-P-fluviatile_contig1:3145114..3145678Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3145115..3145678 +
1622815312.9591525-CDS-P-fluviatile_contig1:3146744..31469781622815312.9591525-CDS-P-fluviatile_contig1:3146744..3146978Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3146745..3146978 +
1693561469.524504-CDS-P-fluviatile_contig1:3146744..31469781693561469.524504-CDS-P-fluviatile_contig1:3146744..3146978Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3146745..3146978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.255.1

>prot_P-fluviatile_contig1.255.1 ID=prot_P-fluviatile_contig1.255.1|Name=mRNA_P-fluviatile_contig1.255.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=266bp
MKRAILCEEQPSWLSAGQQQKLGSASSRLSGRALSLQMASWLVLVLVLAA
QMRPTQQSRCADPYRTPLVPSSSPAPAFVGRPQLPGCKSDQLERRLRGEG
SVAGTPPHVLGGGGSSIMRSRLRPKWRRRMQESMDMDGPPEVSLRDGGRK
RAKAREDAHRQQQQQQQGGGARPTVELPNLQVPVDLPQPGDWLRVPELDG
DGGSPLPLNSQISSANLKIGGGGASKAAVAKAKAKAKAKADPFAVPDNDY
ADSFLDSIWINLLSNR
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mRNA from alignment at P-fluviatile_contig1:3145001..3146978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.255.1 ID=mRNA_P-fluviatile_contig1.255.1|Name=mRNA_P-fluviatile_contig1.255.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1978bp|location=Sequence derived from alignment at P-fluviatile_contig1:3145001..3146978+ (Porterinema fluviatile SAG_2381)
ACACGACCGAGAGAGGAGAGGAAACAGGGCTGGATACATAAATAGGAAAA
CTATCATTCCACGAGTGATATTTCACAAGTGCGGCAGCCACCTCTGCCCG
ACCGTTTGTGTGAGATGAAAAGAGCGATTTTGTGCGAGGAGCAGCCCAGC
TGGTTGTCTGCAGGACAACAACAAAAACTTGGATCGGCTAGCAGCAGGCT
GTCAGGCAGAGCACTCTCGCTCCAGATGGCATCATGGCTGGTGCTAGTGC
TGGTCCTCGCAGCCCAGATGCGGCCTACGCAGCAGTCCCGGTGTGCGGAC
CCGTATCGGACGCCTCTCGTGCCCTCCTCTTCGCCGGCGCCAGCGTTCGT
CGGACGGCCTCAGCTGCCGGGTTGCAAAAGCGACCAACTTGAACGTCGAC
TCAGAGGGGAAGGTTCCGTCGCAGGGACACCACCACACGTGCTGGGCGGC
GGCGGCAGCAGCATCATGAGGTCGAGGCTCAGGCCCAAGTGGCGGCGGCG
CATGCAGGAAAGTATGGACATGGACGGACCGCCTGAGGTTTCCTTACGCG
ACGGCGGGAGGAAGAGGGCCAAGGCCAGGGAAGACGCGCACAGGCAGCAG
CAGCAGCAGCAGCAGGGAGGAGGAGCGCGACCGACGGTTGAACTTCCGAA
CCTTCAAGTTCCGGTGGACTTGCCTCAGGTGTGCATCTTTTTTCTGCTCT
GCATGTCGAAGCGGATTGAACATTTCTCACAGTTTCTCTCATTCGCGTCG
TCGACGCGGAGAGAGTGTCTTTCGCGCCTGCCCCTCACGATGTTAGACGT
GATTTCTTCGAGTCGGTGTGTGTCTCTCCCTTGTGATAACAGAGATCTCG
AAGAGAGGTGACGAACCCCGCCTGCTGCGGCGGGCCAACAGATAAAGCTG
TCGGAGAAATCGATTTTCAAGTTTCACACGGTGTTCGCAGTCAGCTATCG
CACGTGTTCGTGCCCGGCTACTTCTGCCGCCGATGCACTGATCGAAAAAT
CGAATGCGGCAATCGTCTCACCCCCTCTTTCAAGATGTCATGTCCGGATG
CCTCGGACACCACTTTGACTGCTCTGAAGGCACGAGATCGGAGCGCGCAG
AATCGAGGGGGGGTCAGTATTGCGCGTTGCTCTCGCGCATGTGAGAAATA
ATGCCAGCGCACCAATATCTGTTAGCGAGTAGCAAGTGGATTTTTGTCGC
AGTTACAGAAAGCAACCCCAGGTGATTGGCTGTGAAAGCTGCTCTCGAAT
CGCCACAACACCAACGAAGTAGCTAATTTTCCGAGAGAGCAAAACAGCTG
ATGCTTTTTGGGGGGGAAGAGATAGGTCAGTCGATACGATGTTCAACGTC
GCAAGGCGGATCGCCCGCTCGCTGTTCGCTCCCAAACTGGAGCGTTTCTT
TCAAAGGGTACCATTCGTGGTATCCTGCTGTTCCCGGGTAATTCATTGCC
AGTGTTTGATTTTCGGGTGCGGTTCCGTGTGCATTCAATTTCGCAATGTG
TTGTTCATCCAAGCCCGGCCTCGGCCACCTAGTCTGATGCCAAGCTTTTA
GAGCCCTTCCCACTTTTCGGAAATGAACACACGCGTAAGTGTGCCGTCTC
CCTGCCTCGCTCGCTCGCCCCCCCTCTCTCTCTCTCTCTTTCTCTCTCTC
TCTTTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTATCTCT
CTATCACCTCTTGTTGGATGAAACACGAAATCTCCTCGCGCCAGCCCGGA
GATTGGCTGCGGGTGCCGGAGCTGGACGGAGACGGCGGCAGTCCCCTGCC
ACTCAACAGCCAAATCTCGTCCGCCAACCTAAAGATCGGCGGCGGCGGCG
CAAGCAAGGCGGCAGTGGCGAAGGCCAAGGCCAAGGCCAAGGCCAAGGCA
GACCCCTTCGCGGTCCCGGACAATGACTACGCCGACTCCTTCCTTGACTC
CATCTGGATCAACTTGCTCAGCAACCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3145001..3146978+

>mRNA_P-fluviatile_contig1.255.1 ID=mRNA_P-fluviatile_contig1.255.1|Name=mRNA_P-fluviatile_contig1.255.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1596bp|location=Sequence derived from alignment at P-fluviatile_contig1:3145001..3146978+ (Porterinema fluviatile SAG_2381)
ATGAAAAGAGCGATTTTGTGCGAGGAGCAGCCCAGCTGGTTGTCTGCAGG
ACAACAACAAAAACTTGGATCGGCTAGCAGCAGGCTGTCAGGCAGAGCAC
TCTCGCTCCAGATGGCATCATGGCTGGTGCTAGTGCTGGTCCTCGCAGCC
CAGATGCGGCCTACGCAGCAGTCCCGGTGTGCGGACCCGTATCGGACGCC
TCTCGTGCCCTCCTCTTCGCCGGCGCCAGCGTTCGTCGGACGGCCTCAGC
TGCCGGGTTGCAAAAGCGACCAACTTGAACGTCGACTCAGAGGGGAAGGT
TCCGTCGCAGGGACACCACCACACGTGCTGGGCGGCGGCGGCAGCAGCAT
CATGAGGTCGAGGCTCAGGCCCAAGTGGCGGCGGCGCATGCAGGAAAGTA
TGGACATGGACGGACCGCCTGAGGTTTCCTTACGCGACGGCGGGAGGAAG
AGGGCCAAGGCCAGGGAAGACGCGCACAGGCAGCAGCAGCAGCAGCAGCA
GGGAGGAGGAGCGCGACCGACGGTTGAACTTCCGAACCTTCAAGTTCCGG
TGGACTTGCCTCAGATGAAAAGAGCGATTTTGTGCGAGGAGCAGCCCAGC
TGGTTGTCTGCAGGACAACAACAAAAACTTGGATCGGCTAGCAGCAGGCT
GTCAGGCAGAGCACTCTCGCTCCAGATGGCATCATGGCTGGTGCTAGTGC
TGGTCCTCGCAGCCCAGATGCGGCCTACGCAGCAGTCCCGGTGTGCGGAC
CCGTATCGGACGCCTCTCGTGCCCTCCTCTTCGCCGGCGCCAGCGTTCGT
CGGACGGCCTCAGCTGCCGGGTTGCAAAAGCGACCAACTTGAACGTCGAC
TCAGAGGGGAAGGTTCCGTCGCAGGGACACCACCACACGTGCTGGGCGGC
GGCGGCAGCAGCATCATGAGGTCGAGGCTCAGGCCCAAGTGGCGGCGGCG
CATGCAGGAAAGTATGGACATGGACGGACCGCCTGAGGTTTCCTTACGCG
ACGGCGGGAGGAAGAGGGCCAAGGCCAGGGAAGACGCGCACAGGCAGCAG
CAGCAGCAGCAGCAGGGAGGAGGAGCGCGACCGACGGTTGAACTTCCGAA
CCTTCAAGTTCCGGTGGACTTGCCTCAGCCCGGAGATTGGCTGCGGGTGC
CGGAGCTGGACGGAGACGGCGGCAGTCCCCTGCCACTCAACAGCCAAATC
TCGTCCGCCAACCTAAAGATCGGCGGCGGCGGCGCAAGCAAGGCGGCAGT
GGCGAAGGCCAAGGCCAAGGCCAAGGCCAAGGCAGACCCCTTCGCGGTCC
CGGACAATGACTACGCCGACTCCTTCCTTGACTCCATCTGGATCAACTTG
CTCAGCAACCGGCCCGGAGATTGGCTGCGGGTGCCGGAGCTGGACGGAGA
CGGCGGCAGTCCCCTGCCACTCAACAGCCAAATCTCGTCCGCCAACCTAA
AGATCGGCGGCGGCGGCGCAAGCAAGGCGGCAGTGGCGAAGGCCAAGGCC
AAGGCCAAGGCCAAGGCAGACCCCTTCGCGGTCCCGGACAATGACTACGC
CGACTCCTTCCTTGACTCCATCTGGATCAACTTGCTCAGCAACCGG
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