mRNA_P-fluviatile_contig1.245.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.245.1
Unique NamemRNA_P-fluviatile_contig1.245.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3019990..3020482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.245.1prot_P-fluviatile_contig1.245.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3020028..3020357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.4353242-UTR-P-fluviatile_contig1:3019989..30200271622815269.4353242-UTR-P-fluviatile_contig1:3019989..3020027Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3019990..3020027 +
1693561320.5848596-UTR-P-fluviatile_contig1:3019989..30200271693561320.5848596-UTR-P-fluviatile_contig1:3019989..3020027Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3019990..3020027 +
1622815269.4559877-UTR-P-fluviatile_contig1:3020357..30204821622815269.4559877-UTR-P-fluviatile_contig1:3020357..3020482Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3020358..3020482 +
1693561320.9571187-UTR-P-fluviatile_contig1:3020357..30204821693561320.9571187-UTR-P-fluviatile_contig1:3020357..3020482Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3020358..3020482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.445278-CDS-P-fluviatile_contig1:3020027..30203571622815269.445278-CDS-P-fluviatile_contig1:3020027..3020357Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3020028..3020357 +
1693561320.7118273-CDS-P-fluviatile_contig1:3020027..30203571693561320.7118273-CDS-P-fluviatile_contig1:3020027..3020357Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3020028..3020357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.245.1

>prot_P-fluviatile_contig1.245.1 ID=prot_P-fluviatile_contig1.245.1|Name=mRNA_P-fluviatile_contig1.245.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
MHSWSAIAISCITAREQRNKNHRRKTVDHIPSQKRRSVPFARYRVFFHQQ
LFKNPDPEKRSGILSSNTSPLPLTSPASFQPKPLCVTIKFNNNHSRVNTN
QNGGTIIMH*
back to top

mRNA from alignment at P-fluviatile_contig1:3019990..3020482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.245.1 ID=mRNA_P-fluviatile_contig1.245.1|Name=mRNA_P-fluviatile_contig1.245.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=493bp|location=Sequence derived from alignment at P-fluviatile_contig1:3019990..3020482+ (Porterinema fluviatile SAG_2381)
TCAACCAACAGGGGTATCGCTCGTTGCCTTGTGCTTACATGCACTCATGG
TCTGCCATCGCAATTTCGTGTATAACTGCAAGAGAACAACGAAACAAAAA
TCATCGTCGCAAGACTGTGGATCATATACCCTCACAAAAACGTCGGAGTG
TTCCCTTTGCGCGATATCGTGTGTTCTTTCATCAGCAACTGTTCAAAAAT
CCTGATCCTGAAAAAAGATCTGGAATATTATCGTCGAACACCTCCCCACT
CCCGCTCACTTCCCCTGCTTCATTTCAACCTAAGCCACTTTGCGTAACAA
TTAAATTCAACAACAATCACTCTCGGGTAAACACAAACCAAAATGGTGGA
ACGATAATAATGCACTGAGCAGCAGACAGCCGGCTGTTCACGCGTCGATG
ATGAGAACCGTGGATAAACATCACGGCCCCCCACTCCACCCACAGCCCCT
CCCACCTCCATCGATGCGTTTCTAGTTCTCGCCCATGTTACCG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:3019990..3020482+

>mRNA_P-fluviatile_contig1.245.1 ID=mRNA_P-fluviatile_contig1.245.1|Name=mRNA_P-fluviatile_contig1.245.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig1:3019990..3020482+ (Porterinema fluviatile SAG_2381)
ATGCACTCATGGTCTGCCATCGCAATTTCGTGTATAACTGCAAGAGAACA
ACGAAACAAAAATCATCGTCGCAAGACTGTGGATCATATACCCTCACAAA
AACGTCGGAGTGTTCCCTTTGCGCGATATCGTGTGTTCTTTCATCAGCAA
CTGTTCAAAAATCCTGATCCTGAAAAAAGATCTGGAATATTATCGTCGAA
CACCTCCCCACTCCCGCTCACTTCCCCTGCTTCATTTCAACCTAAGCCAC
TTTGCGTAACAATTAAATTCAACAACAATCACTCTCGGGTAAACACAAAC
CAAAATGGTGGAACGATAATAATGCACTGAATGCACTCATGGTCTGCCAT
CGCAATTTCGTGTATAACTGCAAGAGAACAACGAAACAAAAATCATCGTC
GCAAGACTGTGGATCATATACCCTCACAAAAACGTCGGAGTGTTCCCTTT
GCGCGATATCGTGTGTTCTTTCATCAGCAACTGTTCAAAAATCCTGATCC
TGAAAAAAGATCTGGAATATTATCGTCGAACACCTCCCCACTCCCGCTCA
CTTCCCCTGCTTCATTTCAACCTAAGCCACTTTGCGTAACAATTAAATTC
AACAACAATCACTCTCGGGTAAACACAAACCAAAATGGTGGAACGATAAT
AATGCACTGA
back to top