mRNA_P-fluviatile_contig1.244.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.244.1
Unique NamemRNA_P-fluviatile_contig1.244.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3007925..3009803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-04_006090.1
Exons2
Model size604
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.334457-CDS-P-fluviatile_contig1:3007924..30083371622815265.334457-CDS-P-fluviatile_contig1:3007924..3008337Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3007925..3008337 -
1693561282.1846058-CDS-P-fluviatile_contig1:3007924..30083371693561282.1846058-CDS-P-fluviatile_contig1:3007924..3008337Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3007925..3008337 -
1622815265.348298-CDS-P-fluviatile_contig1:3009613..30098031622815265.348298-CDS-P-fluviatile_contig1:3009613..3009803Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3009614..3009803 -
1693561282.1980937-CDS-P-fluviatile_contig1:3009613..30098031693561282.1980937-CDS-P-fluviatile_contig1:3009613..3009803Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3009614..3009803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.244.1prot_P-fluviatile_contig1.244.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3007925..3009803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.244.1

>prot_P-fluviatile_contig1.244.1 ID=prot_P-fluviatile_contig1.244.1|Name=mRNA_P-fluviatile_contig1.244.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=201bp
SKSPFFYVIYEVRRSPAVVQSAPFLSTSLRPLPYAGMKLPHRSSSTSHLL
SALVLIMAGFAGCGSTTAFTTPLSLSRSRSSPSPLAGQLSAGAVAAAGVP
CHRRPHPSSSHLDSYRSAVSTRMSFHSGGVVRGGGGSGLKDATRARYFSA
GLFGPGCGGVGGGDGGGRSSCGGRASRSYGISGNRGGFDSAGGSSGPPRR
G
back to top

mRNA from alignment at P-fluviatile_contig1:3007925..3009803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.244.1 ID=mRNA_P-fluviatile_contig1.244.1|Name=mRNA_P-fluviatile_contig1.244.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1879bp|location=Sequence derived from alignment at P-fluviatile_contig1:3007925..3009803- (Porterinema fluviatile SAG_2381)
TCCAAAAGTCCTTTTTTCTACGTCATCTACGAAGTGCGGCGCAGTCCTGC
AGTGGTGCAGTCGGCACCCTTTCTCTCTACCTCTCTCCGTCCCCTTCCTT
ACGCCGGCATGAAGCTTCCACATCGATCCTCGAGCACATCGCACCTATTA
AGCGCCTTGGTCTTGATCATGGCTGGCTTCGCTGGATGTGGTAGGTTTGC
ATCACATGATGTTATTGCGTCGAAGGATGTGTGGAGTTTGAACTCTGCCG
GCATTTCAAGGAGGTGTGCCACACTTCCACGTGGGTCCTGCTGTGCCTCG
CAAACGCCGATGTGGTTTCAATGCGACGTATGGAATCAGCTATCGAGCGA
GCCCAGGAGAGCGATCGCTCAAGCAATTTGCTCCGAGCAGTATACCCGAT
CGTGTTGCCAATTGTTGTCGACTGCGCTTGCTGAATGTTGCAACATACAT
GTACATCACTCAGCACTATATGCAGGGCTGTCAGTTGTGTCCAGGATCAC
CTGTCATTGGTGCATCATATCGCTAGGGGATAGCCGTGTGCGAGGGAAAG
TGCACGAGTTGTGCGACGAGAGGTTTGGTGTAGGTGCGCCCGATTCCCAC
AACAACGTGTGGAACTTGCCCCCAGTCCCTTGATCAGCCCACACGCTCAG
CATTTGTTTCGAGAGGTTATCACTCGCCACTCCATTGAAGCTGTAGCGCG
GTTCCTTCACAGATCTCCTCTGCGAGTCCTCGATCGTGTGATAGTTATAC
TGGAGGTCGAACAAAGGTACCACATCCCCTGTGGGTCGAGTTTCGGAGCT
CGGGCTCTCGACAGCGAGGAGGTTGGCCGATCGGATGCGTCGCTACAAGC
TCTCGTTGTCGCATTTCGCAAGCCGCTCCGTTTGACGCAATCCCCTGTAG
TACCTCGGAGTAAAAGCGGAGATTAGACCGTCTCGTTGTGGGAAGGAGCA
AGAACGAGTGCCCGAGAGGTCCGCGCAATGGAAAAAATGTGCCGAGAGAG
AAATGCCTGCGACGCTCAACCAACCGCACCTCGGGACTGTAGAAGCTGAA
ATCAAGCCCTTTGACTATTCAGCGCTGACTAGTCAAATGGGATTATTTCA
GCTTCAACAAACGTACATCGTGTAACCCACGACTTTCTTTTGTAGAAGCT
GAACTCAACTCATTTGACTAGACAGCGAATTTCAGCTTCTACAGAATTCC
CGGACGGCGCAGCTGTCACAGAGAGACCTTTTCGCAATTGAACGCCAAGG
CTGCGTGCTTCGCTCCTTCGCCAACCTCGAAGCGGTACCCTAGTGTCGGC
AGCTCAGGTGGAACTTGCAACCAGCTAGCTTTCTACGTTGGTGACCTACC
CTCCCATTTCGTTTAGAAGCTACCCGAGCTCGCTCACCTGAAATTTCTCG
AAACTCTTTCCCTGGGCTGTTGTCTGTTGTGCAACACACACCGTTTTTCT
GCTCCTCCTCTGCCAGGCTCGACAACAGCATTCACAACTCCACTCTCGTT
AAGTCGGTCCCGGAGCTCCCCGTCACCACTGGCCGGACAACTCTCGGCGG
GGGCAGTGGCGGCGGCGGGCGTCCCTTGCCACCGCCGTCCCCACCCCTCC
AGCTCCCACCTCGACAGCTACAGAAGCGCAGTATCAACGCGGATGTCCTT
TCATAGCGGCGGCGTCGTCCGCGGCGGTGGCGGCAGCGGCTTGAAGGACG
CAACACGAGCACGCTACTTTTCCGCCGGCCTCTTCGGTCCAGGCTGTGGC
GGTGTCGGCGGCGGCGACGGCGGCGGCAGAAGCAGTTGCGGCGGTCGCGC
TAGCAGGAGCTACGGGATCAGCGGCAACAGAGGGGGCTTCGACAGCGCCG
GGGGATCGTCGGGACCTCCCAGGCGGGGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:3007925..3009803-

>mRNA_P-fluviatile_contig1.244.1 ID=mRNA_P-fluviatile_contig1.244.1|Name=mRNA_P-fluviatile_contig1.244.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1206bp|location=Sequence derived from alignment at P-fluviatile_contig1:3007925..3009803- (Porterinema fluviatile SAG_2381)
TCCAAAAGTCCTTTTTTCTACGTCATCTACGAAGTGCGGCGCAGTCCTGC
AGTGGTGCAGTCGGCACCCTTTCTCTCTACCTCTCTCCGTCCCCTTCCTT
ACGCCGGCATGAAGCTTCCACATCGATCCTCGAGCACATCGCACCTATTA
AGCGCCTTGGTCTTGATCATGGCTGGCTTCGCTGGATGTGTCCAAAAGTC
CTTTTTTCTACGTCATCTACGAAGTGCGGCGCAGTCCTGCAGTGGTGCAG
TCGGCACCCTTTCTCTCTACCTCTCTCCGTCCCCTTCCTTACGCCGGCAT
GAAGCTTCCACATCGATCCTCGAGCACATCGCACCTATTAAGCGCCTTGG
TCTTGATCATGGCTGGCTTCGCTGGATGTGGCTCGACAACAGCATTCACA
ACTCCACTCTCGTTAAGTCGGTCCCGGAGCTCCCCGTCACCACTGGCCGG
ACAACTCTCGGCGGGGGCAGTGGCGGCGGCGGGCGTCCCTTGCCACCGCC
GTCCCCACCCCTCCAGCTCCCACCTCGACAGCTACAGAAGCGCAGTATCA
ACGCGGATGTCCTTTCATAGCGGCGGCGTCGTCCGCGGCGGTGGCGGCAG
CGGCTTGAAGGACGCAACACGAGCACGCTACTTTTCCGCCGGCCTCTTCG
GTCCAGGCTGTGGCGGTGTCGGCGGCGGCGACGGCGGCGGCAGAAGCAGT
TGCGGCGGTCGCGCTAGCAGGAGCTACGGGATCAGCGGCAACAGAGGGGG
CTTCGACAGCGCCGGGGGATCGTCGGGACCTCCCAGGCGGGGAGCTCGAC
AACAGCATTCACAACTCCACTCTCGTTAAGTCGGTCCCGGAGCTCCCCGT
CACCACTGGCCGGACAACTCTCGGCGGGGGCAGTGGCGGCGGCGGGCGTC
CCTTGCCACCGCCGTCCCCACCCCTCCAGCTCCCACCTCGACAGCTACAG
AAGCGCAGTATCAACGCGGATGTCCTTTCATAGCGGCGGCGTCGTCCGCG
GCGGTGGCGGCAGCGGCTTGAAGGACGCAACACGAGCACGCTACTTTTCC
GCCGGCCTCTTCGGTCCAGGCTGTGGCGGTGTCGGCGGCGGCGACGGCGG
CGGCAGAAGCAGTTGCGGCGGTCGCGCTAGCAGGAGCTACGGGATCAGCG
GCAACAGAGGGGGCTTCGACAGCGCCGGGGGATCGTCGGGACCTCCCAGG
CGGGGA
back to top