mRNA_P-fluviatile_contig1.242.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.242.1
Unique NamemRNA_P-fluviatile_contig1.242.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.080e-25
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNS 165
            QAFY AWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNS
Sbjct:  159 QAFYKAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNS 213
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5JE39_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE39_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.140e-16
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNS 165
            +AFY  W  YL ETKL P+RI+ TD TSSTPQGTKS KAIV  GTKVPGARRSNS
Sbjct:  506 EAFYGTWEAYLAETKLTPDRIIKTDGTSSTPQGTKSVKAIVPTGTKVPGARRSNS 560
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5JMR3_9PHAE (HTH psq-type domain-containing protein (Fragment) n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.710e-10
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDETSSTP 93
            QAFY AWAEYLEETKLPPERILNTDETS  P
Sbjct:  159 QAFYKAWAEYLEETKLPPERILNTDETSEVP 189
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5LAK0_9PHAE (HTH psq-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAK0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.040e-10
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDETSSTP 93
            QAFY AWAEYLEETKLPPERILNTDETS  P
Sbjct:  174 QAFYKAWAEYLEETKLPPERILNTDETSEVP 204
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5L259_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L259_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.350e-9
Identity = 35/60 (58.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTD-----ETSSTPQGTKSGKAIVARGTKVPGARRSNS 165
            +AFY  W  YL E+KL P   L         + STPQGTK GKAIV  GTKVPGARRSNS
Sbjct:   29 EAFYETWEVYLAESKLTPSPPLCATARCELRSCSTPQGTKPGKAIVPTGTKVPGARRSNS 88
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5KQE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-8
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDETS 84
            QAFY AWAEYLEETKLPPERILNTDET+
Sbjct:  159 QAFYKAWAEYLEETKLPPERILNTDETT 186
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5JH77_9PHAE (S5A_REDUCTASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH77_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.420e-8
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDET 81
            QAFY AWAEYLEETKLPPERILNTDET
Sbjct:  159 QAFYKAWAEYLEETKLPPERILNTDET 185
[Close]
BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5JGP6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNS 165
            Q FY  + E++++ K+P + + NTDET STPQGTK+ K I   G KV GA  S S
Sbjct:  104 QTFYKDFGEFVDKEKIPADHLWNTDETGSTPQGTKTMKVIAESGQKVVGAIHSKS 158
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BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.950e-6
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    7 FYNAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNS 165
            FY  WA  L+E K     + NTDET +TPQGTK+ KA    G KV G+ R+NS
Sbjct:  146 FYERWAALLDEFKPEANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRANS 198
[Close]
BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.790e-6
Identity = 29/55 (52.73%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:    1 QAFYNAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNS 165
            +AFY AWAEYL ETKLPPE +                    A GTKVPGARRSNS
Sbjct:  197 EAFYKAWAEYLAETKLPPEXVSAVS-------------VSTAVGTKVPGARRSNS 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L1T0_9PHAE2.080e-2598.18Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE39_9PHAE6.140e-1674.55DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JMR3_9PHAE4.710e-1090.32HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5LAK0_9PHAE6.040e-1090.32HTH psq-type domain-containing protein (Fragment) ... [more]
A0A6H5L259_9PHAE9.350e-958.33DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQE4_9PHAE1.770e-892.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH77_9PHAE2.420e-896.30S5A_REDUCTASE domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGP6_9PHAE1.420e-649.09DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JFM5_9PHAE4.950e-650.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK8_9PHAE6.790e-652.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2994042..2994841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.4731245-CDS-P-fluviatile_contig1:2994042..29941251622815311.4731245-CDS-P-fluviatile_contig1:2994042..2994125Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2994043..2994125 -
1693561467.8822978-CDS-P-fluviatile_contig1:2994042..29941251693561467.8822978-CDS-P-fluviatile_contig1:2994042..2994125Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2994043..2994125 -
1622815311.48808-CDS-P-fluviatile_contig1:2994759..29948411622815311.48808-CDS-P-fluviatile_contig1:2994759..2994841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2994760..2994841 -
1693561467.8917508-CDS-P-fluviatile_contig1:2994759..29948411693561467.8917508-CDS-P-fluviatile_contig1:2994759..2994841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2994760..2994841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.242.1prot_P-fluviatile_contig1.242.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2994043..2994841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.242.1

>prot_P-fluviatile_contig1.242.1 ID=prot_P-fluviatile_contig1.242.1|Name=mRNA_P-fluviatile_contig1.242.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
QAFYNAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGA
RRSNS
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mRNA from alignment at P-fluviatile_contig1:2994042..2994841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.242.1 ID=mRNA_P-fluviatile_contig1.242.1|Name=mRNA_P-fluviatile_contig1.242.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=800bp|location=Sequence derived from alignment at P-fluviatile_contig1:2994042..2994841- (Porterinema fluviatile SAG_2381)
CAAGCTTTCTACAACGCATGGGCGGAGTACCTGGAGGAGACCAAGCTCCC
GCCGGAACGCATCCTCAACACGGATGAGACAAGTGAGTTAGGGCAAGGGT
TGAGGTGTCAGTAGGTGTCATTGGGTGTCAGCGGTGTCAGTATCGACTGC
TGTGGGTTCGTAGGCGAAGTACCAGCAGCACTGCGATGTGTCACAACAAC
GCGGAGTTCTGCTGCTGCTGCAAAAAAGATCCAGCAGTTGTCCCGCATAT
CTTCCGAGCCGTTGCTGCTTGTCATGCGCGTAGCACACAACACGCCCGCA
TGTTTGCTGCTGGATTCGGCTGAGGTTGAGCATGTAACAGTCCCTGTGGT
CATCTCAGTTGCACTCTGCCGCATGATTGCATGTGTACATCGTTTTCTGT
TGTGATGCTACCGGCAACAGCGGGCGTGTGTTCTTGGTCTGCAAAATGCA
TGTGTGTTGCTGAACGACGCGCGAAGTGCAGACTAGTAAACCCACCTACG
TTTGGAGCTCAATGCAAACTGCCATGGGTGTGGGGTTATTGTTTCGCACC
CAAAGTTTAAACGAATCCGACACTTGCCGCACAAAAATGGCCTTCACCAC
TGCTGTGTGCCACCACCCGGAGCAAGCAGCACCCATGTGTGTTTGTACGC
GCGTTTTTGTGTGTCTAGTTTACTGATTGTTCAACTGTCTTTACCTCCGA
TGCGCGCGTGTTGTAGGTTCGACCCCTCAAGGTACAAAGTCGGGGAAGGC
AATCGTCGCAAGAGGCACCAAGGTACCCGGCGCGAGGCGTTCCAATTCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2994042..2994841-

>mRNA_P-fluviatile_contig1.242.1 ID=mRNA_P-fluviatile_contig1.242.1|Name=mRNA_P-fluviatile_contig1.242.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig1:2994042..2994841- (Porterinema fluviatile SAG_2381)
CAAGCTTTCTACAACGCATGGGCGGAGTACCTGGAGGAGACCAAGCTCCC
GCCGGAACGCATCCTCAACACGGATGAGACAACAAGCTTTCTACAACGCA
TGGGCGGAGTACCTGGAGGAGACCAAGCTCCCGCCGGAACGCATCCTCAA
CACGGATGAGACAAGTTCGACCCCTCAAGGTACAAAGTCGGGGAAGGCAA
TCGTCGCAAGAGGCACCAAGGTACCCGGCGCGAGGCGTTCCAATTCGGTT
CGACCCCTCAAGGTACAAAGTCGGGGAAGGCAATCGTCGCAAGAGGCACC
AAGGTACCCGGCGCGAGGCGTTCCAATTCG
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