mRNA_P-fluviatile_contig1.232.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.232.1
Unique NamemRNA_P-fluviatile_contig1.232.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.232.1 vs. uniprot
Match: D7FJH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.320e-21
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   94 RDRSKGAKGGRPLAKAPAHRRARKCLGVLDETKLALDEAFADAARKGRPVLEALVLLGASHLSPR 288
            R RSK AK GRPLAKAP HRRARK L  L ET LA++EAFADAARKGRPVLEALVLLGASHLSPR
Sbjct:  130 RRRSKKAKSGRPLAKAPPHRRARKSLRALAETTLAVEEAFADAARKGRPVLEALVLLGASHLSPR 194
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BLAST of mRNA_P-fluviatile_contig1.232.1 vs. uniprot
Match: A0A6H5L1Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.990e-21
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   94 RDRSKGAKGGRPLAKAPAHRRARKCLGVLDETKLALDEAFADAARKGRPVLEALVLLGASHLSPR 288
            R RSK AK GRPLAKAP HRRARK L  L ET LA++EAFADAARKGRPVLEALVLLGASHLSPR
Sbjct:  132 RRRSKKAKSGRPLAKAPPHRRARKGLRALAETTLAVEEAFADAARKGRPVLEALVLLGASHLSPR 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJH5_ECTSI1.320e-2183.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1Y8_9PHAE9.990e-2183.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2899266..2900192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size548
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.232.1prot_P-fluviatile_contig1.232.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2899385..2900192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.0872433-UTR-P-fluviatile_contig1:2899265..28993841622815310.0872433-UTR-P-fluviatile_contig1:2899265..2899384Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2899266..2899384 -
1693561463.2907977-UTR-P-fluviatile_contig1:2899265..28993841693561463.2907977-UTR-P-fluviatile_contig1:2899265..2899384Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2899266..2899384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.1019053-CDS-P-fluviatile_contig1:2899384..28996681622815310.1019053-CDS-P-fluviatile_contig1:2899384..2899668Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2899385..2899668 -
1693561463.4061358-CDS-P-fluviatile_contig1:2899384..28996681693561463.4061358-CDS-P-fluviatile_contig1:2899384..2899668Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2899385..2899668 -
1622815310.1149213-CDS-P-fluviatile_contig1:2900047..29001921622815310.1149213-CDS-P-fluviatile_contig1:2900047..2900192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2900048..2900192 -
1693561463.4169047-CDS-P-fluviatile_contig1:2900047..29001921693561463.4169047-CDS-P-fluviatile_contig1:2900047..2900192Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2900048..2900192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.232.1

>prot_P-fluviatile_contig1.232.1 ID=prot_P-fluviatile_contig1.232.1|Name=mRNA_P-fluviatile_contig1.232.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=143bp
MRPPVGSSGAGHEREGEEAGGPSGRRFSSGSRDRSKGAKGGRPLAKAPAH
RRARKCLGVLDETKLALDEAFADAARKGRPVLEALVLLGASHLSPRCARF
LVPNQGLRGCSVDGLFNTNNSPHKRQNQSIIRFWRGGWERRL*
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mRNA from alignment at P-fluviatile_contig1:2899266..2900192-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.232.1 ID=mRNA_P-fluviatile_contig1.232.1|Name=mRNA_P-fluviatile_contig1.232.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=927bp|location=Sequence derived from alignment at P-fluviatile_contig1:2899266..2900192- (Porterinema fluviatile SAG_2381)
ATGCGACCTCCAGTAGGCAGTTCCGGGGCAGGCCACGAGAGGGAAGGAGA
GGAGGCAGGGGGACCGTCAGGACGAAGATTCTCTAGCGGAAGCCGGGACC
GGAGCAAGGGGGCCAAGGGCGGACGACCTCTGGCGAAGGCTCCTGGTGCG
CTGCAGCAGTCAAAGGCTCCTGGGTCGCTCGTTCGCTGGCGCTTGTTTTG
TGTCCCTTTTCGGCCGGGTCGGGCACGCGAAAAAAGTTCATTTGATGTTA
CGGCTCTCCCTATTTTGTTGCCGAGAGCTCTCGTGAGGTCGAACCTCAGA
AATTGCCTTAACCCACGGGACCAAGAATACCCTTTCTGTGCAAAAGAGCA
CTGCTTTGATCCAAAATGCAGCTGCCATGTACGTTTTTCGGCATGGGGTC
GAGGTCTGGGGGGGCTTGTGTCTGCAGCACACGCGGAATAAATAAGCGCG
ATTCCTGCGACCACCCGGCCGCTGCCGTGCTGCCATGTACGCTCATTTTC
TACCGCTGATGTTTTTCGACACAGCGCACCGTCGTGCTCGGAAATGTCTG
GGGGTGTTGGACGAGACAAAGCTGGCCCTGGATGAGGCGTTCGCAGATGC
TGCTAGGAAAGGGAGGCCCGTTTTGGAAGCCCTCGTCCTACTGGGAGCAT
CGCATCTCTCCCCGAGGTGTGCAAGGTTTTTGGTGCCAAATCAAGGGCTG
CGCGGATGTAGTGTTGATGGGCTCTTCAACACAAACAATTCACCACATAA
ACGGCAAAACCAATCCATCATTCGCTTTTGGCGGGGGGGTTGGGAGCGCC
GTCTATGAGCGCAAGAAATGGGATCGCACTATTTGCTTCCAACGGCGGAC
CTGCAGCCACTTCTTGTGAGTCCTTCGTGTTATTTAGGCTGCGTAGTGAG
TCACGCAAGACGGTGTGGTGCGGTGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2899266..2900192-

>mRNA_P-fluviatile_contig1.232.1 ID=mRNA_P-fluviatile_contig1.232.1|Name=mRNA_P-fluviatile_contig1.232.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=858bp|location=Sequence derived from alignment at P-fluviatile_contig1:2899266..2900192- (Porterinema fluviatile SAG_2381)
ATGCGACCTCCAGTAGGCAGTTCCGGGGCAGGCCACGAGAGGGAAGGAGA
GGAGGCAGGGGGACCGTCAGGACGAAGATTCTCTAGCGGAAGCCGGGACC
GGAGCAAGGGGGCCAAGGGCGGACGACCTCTGGCGAAGGCTCCTGATGCG
ACCTCCAGTAGGCAGTTCCGGGGCAGGCCACGAGAGGGAAGGAGAGGAGG
CAGGGGGACCGTCAGGACGAAGATTCTCTAGCGGAAGCCGGGACCGGAGC
AAGGGGGCCAAGGGCGGACGACCTCTGGCGAAGGCTCCTGCGCACCGTCG
TGCTCGGAAATGTCTGGGGGTGTTGGACGAGACAAAGCTGGCCCTGGATG
AGGCGTTCGCAGATGCTGCTAGGAAAGGGAGGCCCGTTTTGGAAGCCCTC
GTCCTACTGGGAGCATCGCATCTCTCCCCGAGGTGTGCAAGGTTTTTGGT
GCCAAATCAAGGGCTGCGCGGATGTAGTGTTGATGGGCTCTTCAACACAA
ACAATTCACCACATAAACGGCAAAACCAATCCATCATTCGCTTTTGGCGG
GGGGGTTGGGAGCGCCGTCTATGACGCACCGTCGTGCTCGGAAATGTCTG
GGGGTGTTGGACGAGACAAAGCTGGCCCTGGATGAGGCGTTCGCAGATGC
TGCTAGGAAAGGGAGGCCCGTTTTGGAAGCCCTCGTCCTACTGGGAGCAT
CGCATCTCTCCCCGAGGTGTGCAAGGTTTTTGGTGCCAAATCAAGGGCTG
CGCGGATGTAGTGTTGATGGGCTCTTCAACACAAACAATTCACCACATAA
ACGGCAAAACCAATCCATCATTCGCTTTTGGCGGGGGGGTTGGGAGCGCC
GTCTATGA
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