mRNA_P-fluviatile_contig1.231.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.231.1
Unique NamemRNA_P-fluviatile_contig1.231.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.231.1 vs. uniprot
Match: D7FJH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH6_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.810e-31
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  422 PSTRKVQLAIAKTAEKAVELPGFEAFMKMQHGKDSLFRFLEVDHALHSYYLLAKKQVYDVVAKGGKGRGAAVAADPDKNASAT---KGGKAQDPGEKKITLVVAG 727
            P TRK+QL IA TAEK +E+PGFEAFMKMQHG+D+LFRFL  DHALHSYYLLAKK V ++V KGGK +GA  AA+P    +AT      K +DP   +I  ++ G
Sbjct:    4 PPTRKIQLVIAHTAEKTIEVPGFEAFMKMQHGRDALFRFLAADHALHSYYLLAKKHVQEIVMKGGKAKGACAAAEPSSAPAATLKAPSDKTEDPDVAEIMRMLGG 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJH6_ECTSI7.810e-3159.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2894388..2895803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSWAP/Surp
Ec32 orthologEc-04_006160.1
Exons3
Model size879
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.231.1prot_P-fluviatile_contig1.231.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2894680..2895759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.9989104-UTR-P-fluviatile_contig1:2894387..28946791622815309.9989104-UTR-P-fluviatile_contig1:2894387..2894679Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2894388..2894679 +
1693561463.2432852-UTR-P-fluviatile_contig1:2894387..28946791693561463.2432852-UTR-P-fluviatile_contig1:2894387..2894679Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2894388..2894679 +
1622815310.049608-UTR-P-fluviatile_contig1:2895759..28958031622815310.049608-UTR-P-fluviatile_contig1:2895759..2895803Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2895760..2895803 +
1693561463.282638-UTR-P-fluviatile_contig1:2895759..28958031693561463.282638-UTR-P-fluviatile_contig1:2895759..2895803Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2895760..2895803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.01023-CDS-P-fluviatile_contig1:2894679..28948921622815310.01023-CDS-P-fluviatile_contig1:2894679..2894892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2894680..2894892 +
1693561463.2530248-CDS-P-fluviatile_contig1:2894679..28948921693561463.2530248-CDS-P-fluviatile_contig1:2894679..2894892Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2894680..2894892 +
1622815310.0238197-CDS-P-fluviatile_contig1:2895194..28952531622815310.0238197-CDS-P-fluviatile_contig1:2895194..2895253Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2895195..2895253 +
1693561463.2673566-CDS-P-fluviatile_contig1:2895194..28952531693561463.2673566-CDS-P-fluviatile_contig1:2895194..2895253Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2895195..2895253 +
1622815310.0379357-CDS-P-fluviatile_contig1:2895488..28957591622815310.0379357-CDS-P-fluviatile_contig1:2895488..2895759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2895489..2895759 +
1693561463.2748988-CDS-P-fluviatile_contig1:2895488..28957591693561463.2748988-CDS-P-fluviatile_contig1:2895488..2895759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2895489..2895759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.231.1

>prot_P-fluviatile_contig1.231.1 ID=prot_P-fluviatile_contig1.231.1|Name=mRNA_P-fluviatile_contig1.231.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=181bp
MRCRSRCTACCRTPDQTRAFLQRIYPRPPFPRTLLNNMTRNMKPSTRKVQ
LAIAKTAEKAVELPGFEAFMKMQHGKDSLFRFLEVDHALHSYYLLAKKQV
YDVVAKGGKGRGAAVAADPDKNASATKGGKAQDPGEKKITLVVAGPHGNP
NQTIWHDRRISRSPRFAICLQAFRACIFSI*
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mRNA from alignment at P-fluviatile_contig1:2894388..2895803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.231.1 ID=mRNA_P-fluviatile_contig1.231.1|Name=mRNA_P-fluviatile_contig1.231.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1416bp|location=Sequence derived from alignment at P-fluviatile_contig1:2894388..2895803+ (Porterinema fluviatile SAG_2381)
AAAGAAGCCGCCGCGAAGGCAGCCGCCCCTACTCCAAGCAAGCCGACAAA
TTCTTCGTTCTCTGTCCCGCGAGGAATGCCTACGGTGCGTGGCAGGGGAG
TAGGGTCGTGCCGTTCGACGCGATCGGGAACAACGGCAGCGGTAATGCGG
TACCGTGTCTGGAGATTCCTGGCCCTTGACAGAGAGGAGCCGGACACAAC
ATGAGGGTTGCGAGGGGGCTCATTTTTTGCTTTGGAAAGACGCAAATGAT
GCACTGCTAGCCGGCGCTGCAGCCGTCGCACTTTTTCTTGCGATGCGGTG
CCGTTCGCGGTGCACAGCTTGTTGTCGGACACCGGATCAAACACGTGCTT
TCCTTCAAAGGATTTATCCGAGGCCCCCTTTTCCCCGCACCCTGCTCAAC
AACATGACCCGCAACATGAAGCCGTCCACCAGGAAGGTGCAGCTGGCGAT
CGCAAAAACCGCAGAAAAGGCGGTCGAGCTGCCTGGATTCGAAGCCTTCA
TGAAGGTAACAACAGACAGTCGAAGTCGCGCAACAATCATTCGTGCAACA
CTGTGACGCCGTTTCCGACCGCTTGCTCTCGTCTTGACGTGTGCACCGAC
CGAATTTCGAACGAGTGAATGATCTTGAGTGTGCGGGTGATGGTACGAAA
GTGCTTGATTTGAGCTCATCACTCGCCGGCATTTGACGCTTCCGTGTGGT
TCGGCCCAACAGACAGTTCTGCCATCTGTTGCAACATGCCTGAGCAACAT
TCCCGGGTGTTCGCTACTGCTTCATCGCTATATCTTGTTGCGGTCGTCAC
ATGTCAGATGCAGCACGGGAAGGACAGCCTCTTCCGCTTCCTCGAGGTCG
ACCATGCCTTGCACAGGTATCCACCTGTTAAGGCTGTTTCTGGCTTCGTG
TTTTCGGTAATCAGCAGGCTGTTGCTTAGCGGTTTCTTCGTTCGAGCGTG
GCACGAGTCGCTGGCTGCAGTACTGTTCCCTCAAACACGTGCGAACAAAG
AACGAGTCTCCCGTTCGCAAAAGATCGGACTTAAATAACCTGCAATAAAT
AATCCAATCGCTTCTTTCACGCTTTGCTTCTTTCCCGCGTTGCTTTCTCA
GCTACTATCTCCTGGCAAAGAAGCAAGTCTATGACGTCGTCGCGAAGGGC
GGCAAAGGGAGAGGCGCCGCTGTCGCCGCCGACCCTGACAAAAATGCCTC
GGCCACGAAAGGCGGCAAGGCGCAAGACCCCGGTGAAAAAAAGATTACTC
TCGTCGTTGCAGGGCCGCATGGAAATCCAAACCAAACCATCTGGCACGAT
CGACGTATTTCTCGATCTCCAAGATTTGCTATTTGTTTGCAAGCATTTCG
GGCGTGCATTTTTTCGATTTAATCTTGCTGCTTGTCTTGTTCTATCGGGG
CTCTGGACCTAAGTCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2894388..2895803+

>mRNA_P-fluviatile_contig1.231.1 ID=mRNA_P-fluviatile_contig1.231.1|Name=mRNA_P-fluviatile_contig1.231.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1086bp|location=Sequence derived from alignment at P-fluviatile_contig1:2894388..2895803+ (Porterinema fluviatile SAG_2381)
ATGCGGTGCCGTTCGCGGTGCACAGCTTGTTGTCGGACACCGGATCAAAC
ACGTGCTTTCCTTCAAAGGATTTATCCGAGGCCCCCTTTTCCCCGCACCC
TGCTCAACAACATGACCCGCAACATGAAGCCGTCCACCAGGAAGGTGCAG
CTGGCGATCGCAAAAACCGCAGAAAAGGCGGTCGAGCTGCCTGGATTCGA
AGCCTTCATGAAGATGCGGTGCCGTTCGCGGTGCACAGCTTGTTGTCGGA
CACCGGATCAAACACGTGCTTTCCTTCAAAGGATTTATCCGAGGCCCCCT
TTTCCCCGCACCCTGCTCAACAACATGACCCGCAACATGAAGCCGTCCAC
CAGGAAGGTGCAGCTGGCGATCGCAAAAACCGCAGAAAAGGCGGTCGAGC
TGCCTGGATTCGAAGCCTTCATGAAGATGCAGCACGGGAAGGACAGCCTC
TTCCGCTTCCTCGAGGTCGACCATGCCTTGCACAGATGCAGCACGGGAAG
GACAGCCTCTTCCGCTTCCTCGAGGTCGACCATGCCTTGCACAGCTACTA
TCTCCTGGCAAAGAAGCAAGTCTATGACGTCGTCGCGAAGGGCGGCAAAG
GGAGAGGCGCCGCTGTCGCCGCCGACCCTGACAAAAATGCCTCGGCCACG
AAAGGCGGCAAGGCGCAAGACCCCGGTGAAAAAAAGATTACTCTCGTCGT
TGCAGGGCCGCATGGAAATCCAAACCAAACCATCTGGCACGATCGACGTA
TTTCTCGATCTCCAAGATTTGCTATTTGTTTGCAAGCATTTCGGGCGTGC
ATTTTTTCGATTTAACTACTATCTCCTGGCAAAGAAGCAAGTCTATGACG
TCGTCGCGAAGGGCGGCAAAGGGAGAGGCGCCGCTGTCGCCGCCGACCCT
GACAAAAATGCCTCGGCCACGAAAGGCGGCAAGGCGCAAGACCCCGGTGA
AAAAAAGATTACTCTCGTCGTTGCAGGGCCGCATGGAAATCCAAACCAAA
CCATCTGGCACGATCGACGTATTTCTCGATCTCCAAGATTTGCTATTTGT
TTGCAAGCATTTCGGGCGTGCATTTTTTCGATTTAA
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