mRNA_P-fluviatile_contig1.23.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.23.1
Unique NamemRNA_P-fluviatile_contig1.23.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:340372..340890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.23.1prot_P-fluviatile_contig1.23.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 340485..340853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.7922776-UTR-P-fluviatile_contig1:340371..3404841622815268.7922776-UTR-P-fluviatile_contig1:340371..340484Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 340372..340484 +
1693561317.9392052-UTR-P-fluviatile_contig1:340371..3404841693561317.9392052-UTR-P-fluviatile_contig1:340371..340484Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 340372..340484 +
1622815268.8232753-UTR-P-fluviatile_contig1:340853..3408901622815268.8232753-UTR-P-fluviatile_contig1:340853..340890Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 340854..340890 +
1693561318.1365254-UTR-P-fluviatile_contig1:340853..3408901693561318.1365254-UTR-P-fluviatile_contig1:340853..340890Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 340854..340890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8088436-CDS-P-fluviatile_contig1:340484..3408531622815268.8088436-CDS-P-fluviatile_contig1:340484..340853Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 340485..340853 +
1693561318.0470316-CDS-P-fluviatile_contig1:340484..3408531693561318.0470316-CDS-P-fluviatile_contig1:340484..340853Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 340485..340853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.23.1

>prot_P-fluviatile_contig1.23.1 ID=prot_P-fluviatile_contig1.23.1|Name=mRNA_P-fluviatile_contig1.23.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=123bp
MTGNCVGQLTMKRSLNVTLFASQCSHPNHISVSALINHHPKLVLLGYNML
WPPNFTKTKPVICILFHAPRPTPPPHPRSTSDHFPEVGAAGPRHAAAAEL
YQSENLHVKSFATPSSFPRSMV*
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mRNA from alignment at P-fluviatile_contig1:340372..340890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.23.1 ID=mRNA_P-fluviatile_contig1.23.1|Name=mRNA_P-fluviatile_contig1.23.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=519bp|location=Sequence derived from alignment at P-fluviatile_contig1:340372..340890+ (Porterinema fluviatile SAG_2381)
GATTTCATGTGGTGTGGTATATGGATGCCGCCAAGTGCACGTAATACCGC
GATCGCCGGAGTTAGGCCAACCCCCCTAGACCGACTCTTCTAGCTTGACT
TCCCATTTATTCGATGACGGGAAACTGTGTTGGTCAGCTCACTATGAAAC
GCAGCTTGAACGTTACATTATTCGCTTCACAGTGTTCCCACCCCAACCAC
ATCTCCGTCTCAGCCTTGATAAATCATCACCCAAAGTTGGTGCTGTTGGG
CTACAACATGCTGTGGCCGCCGAACTTCACCAAAACGAAACCTGTAATTT
GCATCCTTTTCCACGCCCCCCGTCCTACCCCACCCCCCCATCCGCGCTCC
ACCTCCGATCACTTCCCCGAAGTTGGTGCTGCTGGGCCACGACATGCTGC
TGCCGCTGAACTTTACCAAAGCGAAAATCTGCACGTAAAATCCTTTGCCA
CCCCCTCGTCCTTCCCGAGGTCAATGGTCTAACGACTACGGCATGCACGA
CTATGAGTACACCCCGTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:340372..340890+

>mRNA_P-fluviatile_contig1.23.1 ID=mRNA_P-fluviatile_contig1.23.1|Name=mRNA_P-fluviatile_contig1.23.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=738bp|location=Sequence derived from alignment at P-fluviatile_contig1:340372..340890+ (Porterinema fluviatile SAG_2381)
ATGACGGGAAACTGTGTTGGTCAGCTCACTATGAAACGCAGCTTGAACGT
TACATTATTCGCTTCACAGTGTTCCCACCCCAACCACATCTCCGTCTCAG
CCTTGATAAATCATCACCCAAAGTTGGTGCTGTTGGGCTACAACATGCTG
TGGCCGCCGAACTTCACCAAAACGAAACCTGTAATTTGCATCCTTTTCCA
CGCCCCCCGTCCTACCCCACCCCCCCATCCGCGCTCCACCTCCGATCACT
TCCCCGAAGTTGGTGCTGCTGGGCCACGACATGCTGCTGCCGCTGAACTT
TACCAAAGCGAAAATCTGCACGTAAAATCCTTTGCCACCCCCTCGTCCTT
CCCGAGGTCAATGGTCTAAATGACGGGAAACTGTGTTGGTCAGCTCACTA
TGAAACGCAGCTTGAACGTTACATTATTCGCTTCACAGTGTTCCCACCCC
AACCACATCTCCGTCTCAGCCTTGATAAATCATCACCCAAAGTTGGTGCT
GTTGGGCTACAACATGCTGTGGCCGCCGAACTTCACCAAAACGAAACCTG
TAATTTGCATCCTTTTCCACGCCCCCCGTCCTACCCCACCCCCCCATCCG
CGCTCCACCTCCGATCACTTCCCCGAAGTTGGTGCTGCTGGGCCACGACA
TGCTGCTGCCGCTGAACTTTACCAAAGCGAAAATCTGCACGTAAAATCCT
TTGCCACCCCCTCGTCCTTCCCGAGGTCAATGGTCTAA
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