mRNA_P-fluviatile_contig1.225.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.225.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE) HSP 1 Score: 300 bits (768), Expect = 1.780e-86 Identity = 202/573 (35.25%), Postives = 264/573 (46.07%), Query Frame = 1
Query: 310 GCCGPMWLLVVGFLF--GR-----EWRDLHV---GGQFLDGGAIAMACGPCECTGSSDGSGAVTVFENPSTGKTVALVDGQLSEMAEASCGKSVIAVGSTVFELVGVDFGPRMLAEVDMAPQDCRTPPV--GALADAKCYSGDIFRTLRARVELDITICLCIQRD-DGSSHYNVNINASATGASVISFPDSGVLICTDHGYTSQLINAVVDNSSYFFNFDLVVPGEGSSRDLAVARGPSYEAQSFICGSNTN-------------LTKTVETPAPSVA--------------------------------------------SVNTPPVAVPTAAPTPI----------------------------------------------------------------------------ETLAPFTEAELEQAACVWPQENPCTPTTPVANITKGLGSYYDPHCSGIGCGVGYTGWCRTCFFDTPLYMEVTGQARGDIPDYPDCPCCVLEVYNEPIAVGENGARCVNSTPSPTSEALRTGASGGDALRFEDKPLSFSGWDGFAFGALGAFCVMTFLP 1590
G G + L V GFL GR +W L + G +++DGG ++MAC C+C GSSD SG + VFENP+T VA V+G+ SE+ E SCG S I VGSTV+EL GVDFG R L D++ DC V A +DA CYSG+ + ++T C C + + + Y N+ AS IS PDSG+++C D G SQL+ + D+SS+++ FDL VPG S+ DL V+ GPS +AQ+ C + ETP+P+ A S PV V T APTP ETLAP TE ELEQ AC WP + PCT T ++I +GLG+YYDP CSG GCGVG +G CRTC+F+ + E D+PDYP+CPCCV++ Y+ + RCV +TPSP A TG + FEDKPL SG +GFA AL F ++TFLP
Sbjct: 40 GVYGSLRLFVAGFLLLGGRRGDEGDWGGLLLAVTGQEYIDGGDVSMACDECDCRGSSD-SGTIVVFENPATESLVAKVEGEYSEVVETSCGSSAILVGSTVYELSGVDFGGRSLGVADLSADDCAGDGVIPTAPSDADCYSGESPIDVEGSTGAELTFCHCKWNEGENVAKYATNVRASVKDYVDISVPDSGLVMCQDQGVFSQLVTVLADDSSFYYLFDLDVPGYESAEDLVVSSGPSSDAQALACSVDEEGXXXXXXXXXXXXXXXXXETPSPTTAVEEEPQTTPAPVTXXXXXXXXXXXXXXXSLQPDSSTAGQGATSSSTTAAPVEVDTPAPTPASRGLGTPXXSSAAVDAPPAPTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVTPGPTVVLYSETLAPLTEEELEQVACTWPLDGPCTTETLFSDINRGLGAYYDPGCSGAGCGVGDSGLCRTCYFNLTMGEEGNDD-DVDMPDYPECPCCVMDEYDR------SADRCVGATPSP---AQGTGTEALETYSFEDKPLDMSGGEGFAVAALALFGLLTFLP 601
BLAST of mRNA_P-fluviatile_contig1.225.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.570e-31 Identity = 83/190 (43.68%), Postives = 106/190 (55.79%), Query Frame = 1
Query: 496 KTVALVDGQLSEMAEASCGKSVIAVGSTVFELVGVD-FGPRMLAEVDMAPQD-CRTPPVGALADAKCYSGDIFRTLRARVELDITICLCIQRDDGSSHYNVNINASATGASVISFPDSGVLICTDHGYTSQLINAVVDNSSYFFNFDLVVPGEGSSRDLAVARGPSYEAQSFICGSNTNLTKTVETPAPS 1059
+ V VDG SE+AE SCG SV+AVGSTV+EL G G R L V+M+ D C G + A+CY+GD L V + +TICLC D + Y + A GAS +S P + IC + G+ QL A V+ Y +NFDLVVPG SS DL+V+ P +AQ+FICG L E P PS
Sbjct: 143 RQVVSVDGDHSEIAETSCGTSVMAVGSTVYELSGDGALGSRSLEAVEMSSSDDCSI--TGVPSTAECYTGDTAMALDGDVSMALTICLCYYMDGSRTVYRSQVFAEVVGASAVSVPGDEIEICLEAGFIMQLTTATVEGEDYHYNFDLVVPGRDSSSDLSVSAAPDEDAQAFICGELEEL----EEPTPS 326
BLAST of mRNA_P-fluviatile_contig1.225.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE) HSP 1 Score: 121 bits (304), Expect = 6.540e-25 Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 1120 TLAPFTEAELEQAACVWPQENPCTPTTPVANITKGLGSYYDPHCSGI-------GCGVGYTGWCRTCFFDTPLYMEVTGQARGDIPDYPDCPCCVLEVYNEPIAVGENGARCVNSTPSPTSEAL------RTGASGGDALRFEDKPLSFSGWDGFAFGALGAFCVMTFLP 1590
T AP + E ++ AC+ P+ PCT T +N +G+G YYDP C + GC + CR CFF+TPLY V D+PDYPDCPCCVL++Y E A +G RCV+++P+P+S AL G D L F+D + + A ALG +TF P
Sbjct: 399 TQAPSFDYE-DEGACILPESKPCTEATSFSNTNEGIGDYYDPACELVEGEEQLGGCNADASSLCRMCFFNTPLY--VAKHPDEDLPDYPDCPCCVLDIY-EQDAFNLDGQRCVSASPAPSSPALTEIPVGEITPRGFDDLSFDDGGWEMNAGEVAALSALGLLAALTFFP 564
BLAST of mRNA_P-fluviatile_contig1.225.1 vs. uniprot
Match: D8LE42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE42_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 3.220e-6 Identity = 66/270 (24.44%), Postives = 92/270 (34.07%), Query Frame = 1
Query: 853 ICTDHGYTSQLINAVVDNSSYFFNFDLVVPGEGSSRDLAVARGPSYEAQSFICGSN------------------------------------TNLTKT---------------------VETPAPSV-------------ASVNTPPVAVPTAAPTP----IETLAPFTEAELEQAACVWPQENPCTPTTPVANITKGLGSYYDPHCSGIGCGV-----------GYTGWCRTCFFDTPLYMEVTGQARGDIPDYPDCPCCVLEVYNEPI 1407
+C D G SQL+ + D+ S+++ FDL VPG S+ DL V+ GPS +AQ+ C + + +T V TPAPS +S PV V T APTP +ET PT P A T + G +G C C+F+ L E G D+PDYP+CPCCV++ Y+ +
Sbjct: 1 MCQDQGVFSQLVTVLADDLSFYYLFDLNVPGYESAEDLVVSSGPSSDAQALACPVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPMTAVEXXXXXXXXXVTXXXXVEKVPVTTPAPSSPPDSSTAGQGATSSSTTAAPVGVDTPAPTPASRGLETXXXXXXXXXXXXXXXXXXXXXXXPTLPPAPATAAPAAAXXXXXXXXXXXXXTPGPTVVPPSGDSGLCPPCYFNLTLGEEGDGD-DVDVPDYPECPCCVMDEYDRSV 269
BLAST of mRNA_P-fluviatile_contig1.225.1 vs. uniprot
Match: D8LE45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE45_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 3.280e-6 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query: 1297 CFFDTPLYMEVTGQARGDIPDYPDCPCCVLEVYNE 1401
CFF+TPLY+E D+PDYPDCPCCVL++Y +
Sbjct: 2 CFFNTPLYVEK--HPDEDLPDYPDCPCCVLDIYEQ 34 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.225.1 >prot_P-fluviatile_contig1.225.1 ID=prot_P-fluviatile_contig1.225.1|Name=mRNA_P-fluviatile_contig1.225.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=470bp MARGRRQSARGGRRSSSHSGVASPSTALSFSKHSRRKRGCCGPMWLLVVGback to top mRNA from alignment at P-fluviatile_contig1:2820080..2831846+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.225.1 ID=mRNA_P-fluviatile_contig1.225.1|Name=mRNA_P-fluviatile_contig1.225.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=11767bp|location=Sequence derived from alignment at P-fluviatile_contig1:2820080..2831846+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:2820080..2831846+ >mRNA_P-fluviatile_contig1.225.1 ID=mRNA_P-fluviatile_contig1.225.1|Name=mRNA_P-fluviatile_contig1.225.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2820bp|location=Sequence derived from alignment at P-fluviatile_contig1:2820080..2831846+ (Porterinema fluviatile SAG_2381)back to top |