mRNA_P-fluviatile_contig1.223.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.223.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE) HSP 1 Score: 310 bits (794), Expect = 1.140e-90 Identity = 231/566 (40.81%), Postives = 283/566 (50.00%), Query Frame = 2
Query: 146 QQPHQRRTPTARRRPSSFQRSLGVVLGLLLADRGVTQLFDGGEIALDCGSCECTGTSDDGSIVAFDNPSSGDRIASVNGGYSEILTTSCGASVMVVGSTIYELSGVGGLESRDMDVLAMAPSE-CVTADTPADADCYEGPTSTLALDDGISVEVTFNFATWV-DGATKYKYNMRTLVSGASVVDTS-AFLCFDNGFVAVLFDIAVLGNTYKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTPSP---------------------------------TAAASPPTNAPFVAPTRKPLTPAPVSLPPAVATTTAPV----------GTNATVASXXPAXXXXXXXXXXXXXXXXSSTGSPTLGGGGPL--TIAPVMMTPV--------DGGDE-ACLLPEASPCTLQTLVAKTNDGIGDYYDPACDVPEGRAQPEGCYA--SSLCRRCFFDTPLYLRNNNGTQPPNYPNCPCCVLSLYWVEGAANLDG---CDASPAP-----TPQPVGG--NRGVDAQSLGFEDPGWQMNAGEAAAIASLGLLAVLTFFP 1636
QQ H R T +RR + L + GL+LA +Q DGG + L CG C+CTG+SD S V FDNPSSG+RI SV+G YSEIL TSCG S + VGST+YELSG G L+SR ++VL M PS CVTADTP ADCY PT+T+ L D + VE+TFN W DG+T YK T V G +VV+ C++N F++ +F + VLG TYKY TPSP TA A+ A T AP + A A T APV T A PA T +P GGG L T +P ++ V D DE AC+LPE+ PCT T + TN+GIGDYYDPAC++ EG Q GC A SSLCR CFF+TPLY+ + P+YP+CPCCVL +Y + A NLDG ASPAP T PVG RG D L F+D GW+MNAGE AA+++LGLLA LTFFP
Sbjct: 32 QQRHPRSTMMSRR----TEGMLALAAGLVLAGGVSSQFTDGGAVDLSCGLCDCTGSSDGVSFVVFDNPSSGERIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGAGDLDSRVLEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTEDGSTFYKSFTNTKVFGTTVVEYEFESFCYENEFLSQVFLVTVLGTTYKYNFEFALPGEPTSSDLSVSGAASSSAEAFICGEDLPAT-------TPSPVTPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAIAA---AAXXXXXXXXXXTEAPQA---AAAATAAPVXXXXXXXXXPANTTTAAPTLPAVGNVM-------------TETPVGGGGDDLAATPSPTVLVLVNNTQAPSFDYEDEGACILPESKPCTEATSFSNTNEGIGDYYDPACELVEGEEQLGGCNADASSLCRMCFFNTPLYVAKHPDEDLPDYPDCPCCVLDIY-EQDAFNLDGQRCVSASPAPSSPALTEIPVGEITPRGFD--DLSFDDGGWEMNAGEVAALSALGLLAALTFFP 564
BLAST of mRNA_P-fluviatile_contig1.223.1 vs. uniprot
Match: D8LE46_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE46_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.590e-33 Identity = 73/140 (52.14%), Postives = 94/140 (67.14%), Query Frame = 2
Query: 362 RIASVNGGYSEILTTSCGASVMVVGSTIYELSGVGGLESRDMDVLAMAPSE-CVTADTPADADCYEGPTSTLALDDGISVEVTFNFATWV-DGATKYKYNMRTLVSGASVVDTS-AFLCFDNGFVAVLFDIAVLGNTYKY 772
+I SV+G YSEIL TSCG S + VGST+YELSGVG L+SR +++L M PS CVTADTP ADCY T+T+ L D + VE+TFN W DG+T YK T V G +VV+ C++N F++ +F + VL TYKY
Sbjct: 2 KIVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLELLDMTPSSTCVTADTPDTADCYSASTTTVTLTDDVYVELTFNIGIWTEDGSTFYKSFTNTKVFGTTVVEYEFESFCYENAFLSQVFFVTVLDTTYKY 141
BLAST of mRNA_P-fluviatile_contig1.223.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.620e-24 Identity = 74/194 (38.14%), Postives = 110/194 (56.70%), Query Frame = 2
Query: 224 GLLLADRGVTQLFDGGEIALDCGSCECTGTSDDGSIVAFDNPSSGDRIASVNGGYSEILTTSCGASVMVVGSTIYELSGV--GGLESRDMDVLAMAPSEC----VTADTPADADCYEGPTSTLALDDGISVEVTFNFATWVDG--ATKYKYNMRTLVSG---ASVVDTSAFLCFDNGFVAVLFDIAVLGNTYKY 772
GLLLA G + DGG++++ C C+C G+SD G+IV F+NP++ +A V G YSE++ TSCG+S ++VGST+YELSGV GG R + V ++ +C V P+DADCY G S + ++ E+TF W +G KY N+R V SV D+ +C D G + L + +++ Y
Sbjct: 67 GLLLAVTG-QEYIDGGDVSMACDECDCRGSSDSGTIVVFENPATESLVAKVEGEYSEVVETSCGSSAILVGSTVYELSGVDFGG---RSLGVADLSADDCAGDGVIPTAPSDADCYSGE-SPIDVEGSTGAELTFCHCKWNEGENVAKYATNVRASVKDYVDISVPDSGLVMCQDQGVFSQLVTVLADDSSFYY 255
BLAST of mRNA_P-fluviatile_contig1.223.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 8.870e-16 Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 2
Query: 362 RIASVNGGYSEILTTSCGASVMVVGSTIYELSGVGGLESRDMDVLAMAPSE-CVTADTPADADCYEGPTSTLALDDGISVEVTFNFATWVDGA-TKYKYNMRTLVSGASVVDTSAF---LCFDNGFVAVLFDIAVLGNTYKY 772
++ SV+G +SEI TSCG SVM VGST+YELSG G L SR ++ + M+ S+ C P+ A+CY G T+ +ALD +S+ +T ++DG+ T Y+ + V GAS V +C + GF+ L V G Y Y
Sbjct: 144 QVVSVDGDHSEIAETSCGTSVMAVGSTVYELSGDGALGSRSLEAVEMSSSDDCSITGVPSTAECYTGDTA-MALDGDVSMALTICLCYYMDGSRTVYRSQVFAEVVGASAVSVPGDEIEICLEAGFIMQLTTATVEGEDYHY 284 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.223.1 >prot_P-fluviatile_contig1.223.1 ID=prot_P-fluviatile_contig1.223.1|Name=mRNA_P-fluviatile_contig1.223.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=525bp MNPLRVNRRRRRDGNRGDQGEASEGDQQPHQRRTPTARRRPSSFQRSLGVback to top mRNA from alignment at P-fluviatile_contig1:2787362..2798411+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.223.1 ID=mRNA_P-fluviatile_contig1.223.1|Name=mRNA_P-fluviatile_contig1.223.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=11050bp|location=Sequence derived from alignment at P-fluviatile_contig1:2787362..2798411+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:2787362..2798411+ >mRNA_P-fluviatile_contig1.223.1 ID=mRNA_P-fluviatile_contig1.223.1|Name=mRNA_P-fluviatile_contig1.223.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3150bp|location=Sequence derived from alignment at P-fluviatile_contig1:2787362..2798411+ (Porterinema fluviatile SAG_2381)back to top |