mRNA_P-fluviatile_contig1.218.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.218.1
Unique NamemRNA_P-fluviatile_contig1.218.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.218.1 vs. uniprot
Match: D7G074_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G074_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.280e-5
Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 1 
Query:  244 SDMNTNDSNKGNGMRRTGRTGHATRGSGVDLDINLWDLEELPKLKPKKRTVKRASVKSTR-YNVEIPLRQREQDIWALRRAVLEMDSNEEMRSAPLYML-GRSRITHVSTASGQQPAATLAVPASLGEGQSDAAAATAE 654
            SD  T      +G++R      ATR SG+ +D+NLWDL +LPK      TVKRA   + + Y V +P   R+QD+  LRR   +++   E  S P+Y L G + IT    A     AA LA    LGE + DA  A A+
Sbjct:   16 SDQRTGGEAMTSGVKR------ATRNSGIGIDVNLWDLRDLPKTS----TVKRAPKLNLKDYTVRLPRASRDQDMKLLRRTARDIEGVGE--SDPVYPLTGPACITRKEAA-----AALLA----LGEERDDAMVAAAK 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G074_ECTSI1.280e-538.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2741574..2746810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size661
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.218.1prot_P-fluviatile_contig1.218.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2741575..2746810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.7408826-CDS-P-fluviatile_contig1:2741574..27418311622815305.7408826-CDS-P-fluviatile_contig1:2741574..2741831Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2741575..2741831 -
1693561459.0108378-CDS-P-fluviatile_contig1:2741574..27418311693561459.0108378-CDS-P-fluviatile_contig1:2741574..2741831Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2741575..2741831 -
1622815305.7518783-CDS-P-fluviatile_contig1:2744664..27447931622815305.7518783-CDS-P-fluviatile_contig1:2744664..2744793Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2744665..2744793 -
1693561459.0184593-CDS-P-fluviatile_contig1:2744664..27447931693561459.0184593-CDS-P-fluviatile_contig1:2744664..2744793Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2744665..2744793 -
1622815305.761125-CDS-P-fluviatile_contig1:2746536..27468101622815305.761125-CDS-P-fluviatile_contig1:2746536..2746810Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2746537..2746810 -
1693561459.025906-CDS-P-fluviatile_contig1:2746536..27468101693561459.025906-CDS-P-fluviatile_contig1:2746536..2746810Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2746537..2746810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.218.1

>prot_P-fluviatile_contig1.218.1 ID=prot_P-fluviatile_contig1.218.1|Name=mRNA_P-fluviatile_contig1.218.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=220bp
HTVSLSKRPTLTQTARGDREATREDTLPESNKEKEDQSTAIHGTPSRPQS
KQQAHIKFISTHRLLAPVCPDCFHVFLSRESSDMNTNDSNKGNGMRRTGR
TGHATRGSGVDLDINLWDLEELPKLKPKKRTVKRASVKSTRYNVEIPLRQ
REQDIWALRRAVLEMDSNEEMRSAPLYMLGRSRITHVSTASGQQPAATLA
VPASLGEGQSDAAAATAESR
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mRNA from alignment at P-fluviatile_contig1:2741574..2746810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.218.1 ID=mRNA_P-fluviatile_contig1.218.1|Name=mRNA_P-fluviatile_contig1.218.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5237bp|location=Sequence derived from alignment at P-fluviatile_contig1:2741574..2746810- (Porterinema fluviatile SAG_2381)
CACACCGTCTCCCTGTCCAAGAGACCGACCTTAACGCAGACAGCGAGAGG
GGACCGAGAGGCGACACGCGAGGACACCTTACCAGAATCCAACAAAGAGA
AAGAGGACCAGTCGACCGCCATCCACGGGACACCGTCGAGACCGCAAAGC
AAACAGCAGGCGCACATCAAATTTATTTCCACACACCGCCTACTCGCGCC
GGTGTGTCCGGACTGCTTCCATGTGTTTCTTTCTAGGGAATCCTCCGACA
TGAACACCAACGACAGCAACAAAGGTGAGAGCAAGCAGCGGGCTGGCTCA
GGGGAATACTGGCAGGGAGCGATGAGCTTGCATCACCGTGGTCAGTTGTG
TTGAGAATGCCGCGTAGTGTGGATAGATATAGCCGCCTCGGGTACGTTTG
CCCTCGAGTTGGAGAGAGACGCGACGGTTGGAGAAAGAGCGAGAGTTTGC
AACAATCCCTGCTGATGCACGAGAGAGATGAGTTGCACCAACGCACACAG
CCTGCTGGTCTGCCTTCCTTTCAGTGGCATGCCTAACCAGACGGGCAGCT
CGCCCCTCTTTGGAGGCGAAATTGAAAAATGACACTTGCCCATGAGACTT
GCCCTCGAACACCCCGCTAATTAATAGCCGGGCCGGATTGCATGTGAAGA
AACGGGCACGCTCTCCTGCTGTGACGGCACCGAATGCTCGGCGCCACGAG
ATCGATTACTCTTGCTTAAGCAGTGCGTAACTGGCCAGCAAATCTCATGC
GAGCGTCCATGGCCACTGTTGTGGGCCTTGGAGGGTCATTTCGCTTCATT
GTTTTGACGAGCACAGCAGGAGAGGCTGTGTTCTGTTCCACTCCGGTCTC
TGTGTTTTCGTCGAGTCCCTTTTTTTTTTTTTTTTTTCAAACCGCCGGAT
GCATGCTCGACGATAACGGGGCTCCCGCTTTATTCGTCGGCAGCCAGCAT
CTGGGTACATGTCTTGGCTTCCCATCAACGAGTCTGACCTTCCCTCCCGA
TTTGCCGCTCTCGTTCGAAAGAGTTCCGCGACGGCGCACACTTTCAATCC
GAAGTGCTCCCACTTGTATAGCAGTCGTGGTTCGTGAGTTTGTTTCACAT
TCATGCATCCAGAGGGGAGGATGCAGACGCTTCCCTCCTCCCTTGCTTTT
AATTTGCACAGAACTCCGGAGTATTTGCTGGTGTTTCATTTCTTCGCTCT
CCCGACAAACAGCTGGAATGAAATCTGCTCACGTCGGGAGTCTTCGGTTG
AAAGGCACACTGAATCAAAGCAGCATATCGGGCACTCATCGTGTGATGTG
GTTAAGAGAGGGTAAAACCTTTCAATTGAAACCTTTCCCAATCACGGAGG
TGTGCTCTAGGGGTACAAAGGCTGACTAACCAGGGGAGAGGTGGCATAGT
CCCGTGAAGAGACTGACAGGAGAGTGTTCAATGCAATTGGCCGCGATGCA
AGAAGCCTGCCTTGCCTCCCTCGTGATCAGGATCCTTTGGACCTTACAGC
CAGGTCCACAATTACACACAGGACGGGGATCTCCTTTCTTTCCTGCTGCG
CTCTCGCAAAGCGCTTCCTCTCCCTAAGCATTACAAATAGAGAGCAAACA
GGCACGCATGCTGAGTGCAACTCGGCTGAATGAAGGATGCAGGGGCGAGG
TGTCCGCACCCACCCCGGCCGGTGACCGAGAAGCTGAAAATATAGTCAAG
CAGAGATATGTCAGCGTTGTCTCCCTCCGGGTTAAGAACTTTTGCAACAC
TTGTTTTGTTTTTTTCCGCAACCAGTTAAGGGTAGTTGCATGCGCCGAGT
AGAAAAATCTCCTTCATTGATTATTTGGAACGTTCGCGTTGGATTCGGGC
TTCTCCCACCCAACTTCGAGCAAGGAACGAGGGGGGACGACGTCGGAAGG
GTGGCCATCTAGCGACGATCCCCGCACCCCCTGGCGGATAAGCAAACACC
GAAATCGCCCCCCCCCTCCCTGCCGCCGACGCCGTCATCACTTTTCGTGT
GTCACGCCGTGTTGCAGGAAACGGTATGAGACGAACCGGCCGAACCGGCC
ACGCCACCCGGGGCTCCGGGGTTGACCTGGACATCAATCTCTGGGACCTG
GAAGAGTTGCCCAAGCTGAAACCTAAAAAGAGAACGGTCAAGCGAGGTGA
CTTCTTTGACTTGCGCCTGGGGCTGGCTCTCTGGTAGTCGGGGAATGGTG
TGACGCGCAGGCCTCGTCCTGTCAAACCCCTCCTGCAAACGAATGATAAG
CTACTCCACGTGCGTTCCGGAGCAATTTATGGCGGTTAAAAGAATGAAAA
ACGGGTTCGGATGGGGCCGAAGTCGCGGCGCGGATGACTCGGTGCACTGT
CGTGTATACGAATCGCCGTCAATTATTGTTGATGAACGGTCCAGTTTTGT
TTGCCTCGTCGCAGTCAACGCACAATATTGCTACTGGTGATCGTTGCTGA
CCGCTTTCTGGCCCCGACACATAGTTTACCCAGCCTCCGGTTTCACGTCC
AAATAAGCTCATTTCACAACGCCATTGTGCTTAGTTTCTGCAGAGGCAGA
GGGCACGTTTTCGTTCATCCAGCACTTAATTATCTACGATCCGTGCTCAG
GGAACCAGGGGCCTTGTTTTATACTTGTTTTGGCGTCCCGACAGACCCCC
AGGCCGCTTTGGCAATGATGGATATTTTTCAATGGATATAACCGCTGTCG
GGCATCGTCTATGCGTGAGTGATTTCAAAACAGTTTTTTTTTCGTCCGTT
GGGGTTGGTCCGTGTGTCACATTTTCCGTGATACGCAAAGGTGAGCTGTT
GTTGGAAGGGGTGCTCGAGCAACACCCTTCATCTACGCCGTAGGAGATTG
CTTCGTAGTATACTCTGGAGGTCGGTGGAGCGTACATGCAGAGAGATTTG
CAGATACCCAATCCACACCCCTCCCTCCCCCTTGTCTCCGCTCTCCCGCT
AATGGAACCGCGCGAGAATCGCACACAAGTATCCGAACCAGTGCGACTCT
CTGGCAGCCACGTATGCGAAAGAGGGCACATGCGTGTTGCGGTGCTGTTC
AGAACCCTGACACCGCAAGACGCAACAACGTCGTATTTGTTTGGTCTCCG
ACAACACACTCGTCATCCAGCGAGGATTTGAACCCAGAGGTTGTAGGGAT
CTGTATCGATCGGGCGAAGAGTGCGATGTGAGACGATTTAATTTGGCTCA
TGCGCGAGCCCAATGGCGGCAAACTTAACGCTCTACCTGCTGCCGATTAT
TTCTTTTGGTTGGATTTTTTTATTTTTCATGAAGTTCGCCTGAAGTAGCG
AAATCGGTTGCGAGGGGAACGCTTGAATGACGGCATTATTCGCTCCTCTT
CCGGGAAAACAATGCCAAGCCTTGTTTGGTAAGATAACTTGACGTGCTCC
GTCCTGGCAAATGACCGTGCACGAATCTCTTCGGGCATTCGTGCAACAAC
GCCTCTGCCTGACCTTGCCACCCTGCCCCAAACGGACGTGATCCTGACCC
CACCCCCTCACTCCTGAGCCCAACCCTTACCCTGACCCTTCATCCCCTGC
TTTGACCCTGACCTTGTCGCCGAGCCGAAGGCCCAAAGATGCCGACAGCC
ATTTGTGACAACACATCACGCGGGTGTTTTCTGGCCAATGAGGGAACAAC
GTTATGCAGAATTGTTTGCCGTAACGCGATGTTGTGTCTAGGTGCCCTCG
TCTGCCGACTTTGTCATGCACGGCCATGCGCACAGCAACGGCTCATTTCC
TCCCTCAAGCCCACGTTCTTTGCTGTTTCGGCCCGTCGACTTGCAACCGT
ACATTATCCCCGCGCACAAGAGTTACGCACAAAGCTGGATCTAACGCAGC
AGGGACTCGGAAACCCTTTGTCTCTCTCGATGCCAGGAGTTCAGCCATTT
TCCATGTCTGCTTGGGGTGATCATTATGGCTGATCAAGATCCGTCGTGAC
AAGGCTGAACTCCTGGCCACGAAGCGCGATACGGCTTTTTCAAGTCCGTG
CTGCCGTGGCTCCAACTTTGTGCGTACCTCTTGTGCGCAGGAGTGGTGGA
CGGTTGCGAGTCGACGGGGAAAGCGAGGGCATAAAGTGGACTGGCAGAAG
GAACTGGGGGCTCCGCGACATACCTGTTCCTTTTACATGCAGTAGTCGTT
GAGTCTGGACCTTGCCAAGACTTCACCCGAGGAGACCCCCCCGCCCCTCC
TCCCTACGTTGCCAACCATGTTCCTAGCTTTTGCTCTCCACGCTGCGCCT
CGCAAACATTCGCAACCCCCGCAGAAGGCGTGAATCGTCATGCTTGTGCT
ACGGCAGCGCAACCACTACGCATGCCGCTTGTAGTCGGAAACTTCTGACC
ACGCCGTCAGGAGCTCCTGCTTGTGCTGCCGTAGCGGAGCTTGAACGGTA
TAACCTTTCGGCGCCGGGGCTGAGGTTGGTCGCGGAAAAAGGCGGAGACC
AGGTTGTGATGCACGGGAGAAGGAGGCTCATTGGAAATGCTCATGGTCAA
GTATGCCTAGTCGCCAGAGATATTTGGCCATACATCCAAGGAGCCTTGGC
CTTGCCACCCGTTTTCTTCCTCACCCTCGCTTGACTCTCTGTGCGCCTCG
CAATCAACCCCATCATCCCTCACCGAAGGGCCCCACCTTAGAGCCGGCGA
TGAAGCAGCTGGAACGAGATCCTTGACATGTGTCGCAACGACACATGTCA
AGAGTCTTGTTTCAGCTCCTTCTGACCCAGGTTCGCCATGCTAGCTTTCG
GCGGGTCTGGGGTAAGGTGCGATGCGGTCAACGGGCGGCAAAGAACATAG
GCGGCGGCTCTCACTTTCTCAAGTCATGGTTTGCGTGCCGTAAATCCACT
CGTCAGGCTCTCGAGACCTCGAATGCAAAACCACCAGTATTCCCCCGGAG
CGCCCACCCCACTTCCGCTCACTGTCGTTGTACCCCGCTCTCGCTCTTTT
TCTCTCACCGTCTCGCTCTCCGCGACCAGCCTCGGTCAAGTCCACGCGTT
ACAACGTAGAGATCCCGCTGAGGCAGAGGGAGCAGGACATTTGGGCCCTC
CGCCGAGCGGTTTTGGAGATGGACAGCAACGAAGAGATGCGCTCGGCTCC
GCTGTACATGCTCGGCAGGAGTCGGATTACCCATGTAAGCACTGCCTCCG
GTCAGCAGCCGGCGGCAACTTTGGCGGTGCCAGCATCGCTTGGCGAAGGG
CAGAGTGACGCGGCGGCGGCGACCGCAGAAAGCCGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2741574..2746810-

>mRNA_P-fluviatile_contig1.218.1 ID=mRNA_P-fluviatile_contig1.218.1|Name=mRNA_P-fluviatile_contig1.218.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1320bp|location=Sequence derived from alignment at P-fluviatile_contig1:2741574..2746810- (Porterinema fluviatile SAG_2381)
CACACCGTCTCCCTGTCCAAGAGACCGACCTTAACGCAGACAGCGAGAGG
GGACCGAGAGGCGACACGCGAGGACACCTTACCAGAATCCAACAAAGAGA
AAGAGGACCAGTCGACCGCCATCCACGGGACACCGTCGAGACCGCAAAGC
AAACAGCAGGCGCACATCAAATTTATTTCCACACACCGCCTACTCGCGCC
GGTGTGTCCGGACTGCTTCCATGTGTTTCTTTCTAGGGAATCCTCCGACA
TGAACACCAACGACAGCAACAAAGCACACCGTCTCCCTGTCCAAGAGACC
GACCTTAACGCAGACAGCGAGAGGGGACCGAGAGGCGACACGCGAGGACA
CCTTACCAGAATCCAACAAAGAGAAAGAGGACCAGTCGACCGCCATCCAC
GGGACACCGTCGAGACCGCAAAGCAAACAGCAGGCGCACATCAAATTTAT
TTCCACACACCGCCTACTCGCGCCGGTGTGTCCGGACTGCTTCCATGTGT
TTCTTTCTAGGGAATCCTCCGACATGAACACCAACGACAGCAACAAAGGA
AACGGTATGAGACGAACCGGCCGAACCGGCCACGCCACCCGGGGCTCCGG
GGTTGACCTGGACATCAATCTCTGGGACCTGGAAGAGTTGCCCAAGCTGA
AACCTAAAAAGAGAACGGTCAAGCGAGGAAACGGTATGAGACGAACCGGC
CGAACCGGCCACGCCACCCGGGGCTCCGGGGTTGACCTGGACATCAATCT
CTGGGACCTGGAAGAGTTGCCCAAGCTGAAACCTAAAAAGAGAACGGTCA
AGCGAGCCTCGGTCAAGTCCACGCGTTACAACGTAGAGATCCCGCTGAGG
CAGAGGGAGCAGGACATTTGGGCCCTCCGCCGAGCGGTTTTGGAGATGGA
CAGCAACGAAGAGATGCGCTCGGCTCCGCTGTACATGCTCGGCAGGAGTC
GGATTACCCATGTAAGCACTGCCTCCGGTCAGCAGCCGGCGGCAACTTTG
GCGGTGCCAGCATCGCTTGGCGAAGGGCAGAGTGACGCGGCGGCGGCGAC
CGCAGAAAGCCGTCCTCGGTCAAGTCCACGCGTTACAACGTAGAGATCCC
GCTGAGGCAGAGGGAGCAGGACATTTGGGCCCTCCGCCGAGCGGTTTTGG
AGATGGACAGCAACGAAGAGATGCGCTCGGCTCCGCTGTACATGCTCGGC
AGGAGTCGGATTACCCATGTAAGCACTGCCTCCGGTCAGCAGCCGGCGGC
AACTTTGGCGGTGCCAGCATCGCTTGGCGAAGGGCAGAGTGACGCGGCGG
CGGCGACCGCAGAAAGCCGT
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