mRNA_P-fluviatile_contig1.217.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.217.1
Unique NamemRNA_P-fluviatile_contig1.217.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2740081..2740802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size722
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.3488874-UTR-P-fluviatile_contig1:2740080..27404361622815269.3488874-UTR-P-fluviatile_contig1:2740080..2740436Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2740081..2740436 +
1693561320.2503872-UTR-P-fluviatile_contig1:2740080..27404361693561320.2503872-UTR-P-fluviatile_contig1:2740080..2740436Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2740081..2740436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.3616135-CDS-P-fluviatile_contig1:2740436..27408021622815269.3616135-CDS-P-fluviatile_contig1:2740436..2740802Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2740437..2740802 +
1693561320.423613-CDS-P-fluviatile_contig1:2740436..27408021693561320.423613-CDS-P-fluviatile_contig1:2740436..2740802Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2740437..2740802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.217.1prot_P-fluviatile_contig1.217.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2740437..2740802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.217.1

>prot_P-fluviatile_contig1.217.1 ID=prot_P-fluviatile_contig1.217.1|Name=mRNA_P-fluviatile_contig1.217.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
MASLPLPVATAFATAKSGSPVAIFKPSAEEADAAAADVTLPVTVFAVSLA
LDLFAVASSHGSPSRFCCSCCCCCCCSRSLRSVDGGNPGWSSWSPNRPST
SASALRHRSMFIGVSEPRNVG*
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mRNA from alignment at P-fluviatile_contig1:2740081..2740802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.217.1 ID=mRNA_P-fluviatile_contig1.217.1|Name=mRNA_P-fluviatile_contig1.217.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=722bp|location=Sequence derived from alignment at P-fluviatile_contig1:2740081..2740802+ (Porterinema fluviatile SAG_2381)
CACCCCTGAACCTGATCTTTCCACTAGCGACTACAAGCTTCATCCGCTTG
ACGCCATTGCGGCCGTCGACGTTGGTTCCCTCCTCGCCTAAGCACCTGGC
CCCGTCTTGACCACACCCGTTGTCCCCGCCATTGTTGTCGTTGCCGCCAT
CCAATAGGCGCTTGCGCGAAAGGGCTGAAGAAACTTTGAGGCTGTCCACA
TGGTCGACCGTCCACCCCCCGCTGTCGCAGCGCGCGCCGCCACCGGCGAG
GTGTCCCGACCGTTCTTGGGCGCAGAGATGAGCCTGAACGCCACTCTCGG
TTGCGTCCGGGGTGCTCGCAGCCTTCAGACACCCTCCTGCCTCGCCCAGG
GTCTTGATGGCCTCACTACCCCTGCCTGTCGCCACCGCCTTTGCTACCGC
GAAGAGTGGGAGTCCGGTCGCCATCTTCAAGCCAAGCGCAGAAGAAGCCG
ACGCAGCCGCCGCCGATGTCACCTTACCGGTGACTGTATTTGCGGTATCG
CTGGCACTTGACTTGTTTGCCGTGGCGTCCTCGCACGGCTCCCCTTCTCG
TTTCTGCTGCAGCTGCTGCTGCTGCTGCTGCTGCTCGCGATCACTTCGAT
CGGTGGACGGGGGAAACCCCGGGTGGTCATCGTGGTCTCCCAATCGGCCG
TCCACTTCGGCTTCGGCCTTGAGGCATCGCTCTATGTTCATCGGGGTCAG
CGAGCCTAGAAATGTGGGGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2740081..2740802+

>mRNA_P-fluviatile_contig1.217.1 ID=mRNA_P-fluviatile_contig1.217.1|Name=mRNA_P-fluviatile_contig1.217.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig1:2740081..2740802+ (Porterinema fluviatile SAG_2381)
ATGGCCTCACTACCCCTGCCTGTCGCCACCGCCTTTGCTACCGCGAAGAG
TGGGAGTCCGGTCGCCATCTTCAAGCCAAGCGCAGAAGAAGCCGACGCAG
CCGCCGCCGATGTCACCTTACCGGTGACTGTATTTGCGGTATCGCTGGCA
CTTGACTTGTTTGCCGTGGCGTCCTCGCACGGCTCCCCTTCTCGTTTCTG
CTGCAGCTGCTGCTGCTGCTGCTGCTGCTCGCGATCACTTCGATCGGTGG
ACGGGGGAAACCCCGGGTGGTCATCGTGGTCTCCCAATCGGCCGTCCACT
TCGGCTTCGGCCTTGAGGCATCGCTCTATGTTCATCGGGGTCAGCGAGCC
TAGAAATGTGGGGTAGATGGCCTCACTACCCCTGCCTGTCGCCACCGCCT
TTGCTACCGCGAAGAGTGGGAGTCCGGTCGCCATCTTCAAGCCAAGCGCA
GAAGAAGCCGACGCAGCCGCCGCCGATGTCACCTTACCGGTGACTGTATT
TGCGGTATCGCTGGCACTTGACTTGTTTGCCGTGGCGTCCTCGCACGGCT
CCCCTTCTCGTTTCTGCTGCAGCTGCTGCTGCTGCTGCTGCTGCTCGCGA
TCACTTCGATCGGTGGACGGGGGAAACCCCGGGTGGTCATCGTGGTCTCC
CAATCGGCCGTCCACTTCGGCTTCGGCCTTGAGGCATCGCTCTATGTTCA
TCGGGGTCAGCGAGCCTAGAAATGTGGGGTAG
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