mRNA_P-fluviatile_contig1.216.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig1.216.1
Unique Name	mRNA_P-fluviatile_contig1.216.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig1.216.1 vs. uniprot
Match: A0A6H5JKS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 9.370e-17
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1

Query: 1027 HTEEDSSVCYDFRTQYLQCLHLPSIRMISKKQMEEMAVGKDSLFLAAKALESTGGATGSAPTKPPEESST 1236
            +TE DSSVCYDFR QY  CLHLP++  +S+KQM+ M   KD+L LA+KAL+S  GA+GSAP KPP E ST
Sbjct:   25 NTEPDSSVCYDFRKQYFNCLHLPTVNTMSEKQMDFMEERKDTLVLASKALQS--GASGSAPAKPPGEEST 92

[Close]

BLAST of mRNA_P-fluviatile_contig1.216.1 vs. uniprot
Match: D7G067_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G067_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 9.990e-17
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1

Query: 1024 QHTEEDSSVCYDFRTQYLQCLHLPSIRMISKKQMEEMAVGKDSLFLAAKALESTGGATGSAPTKPPEESST 1236
            ++TE DSSVCYDFR QY  CLHLP++  +S+KQM+ M   KD+L LA+KAL+S  GA+GSAP KPP E ST
Sbjct:   48 ENTEPDSSVCYDFRKQYFNCLHLPTVNTMSEKQMDFMEERKDTLVLASKALQS--GASGSAPAKPPGEEST 116

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig1.216.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig1.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JKS7_9PHAE	9.370e-17	62.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G067_ECTSI	9.990e-17	61.97	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig1	contig	P-fluviatile_contig1:2722882..2726344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-05_004000.1
Exons	2
Model size	2475
Cds size	270
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig1.216.1	prot_P-fluviatile_contig1.216.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig1 2723851..2725108 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815305.6763868-UTR-P-fluviatile_contig1:2722881..2723850	1622815305.6763868-UTR-P-fluviatile_contig1:2722881..2723850	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 2722882..2723850 +
1693561458.9600906-UTR-P-fluviatile_contig1:2722881..2723850	1693561458.9600906-UTR-P-fluviatile_contig1:2722881..2723850	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 2722882..2723850 +
1622815305.712192-UTR-P-fluviatile_contig1:2725108..2726344	1622815305.712192-UTR-P-fluviatile_contig1:2725108..2726344	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 2725109..2726344 +
1693561459.0033004-UTR-P-fluviatile_contig1:2725108..2726344	1693561459.0033004-UTR-P-fluviatile_contig1:2725108..2726344	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig1 2725109..2726344 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815305.6898892-CDS-P-fluviatile_contig1:2723850..2723988	1622815305.6898892-CDS-P-fluviatile_contig1:2723850..2723988	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 2723851..2723988 +
1693561458.9770753-CDS-P-fluviatile_contig1:2723850..2723988	1693561458.9770753-CDS-P-fluviatile_contig1:2723850..2723988	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 2723851..2723988 +
1622815305.700026-CDS-P-fluviatile_contig1:2724976..2725108	1622815305.700026-CDS-P-fluviatile_contig1:2724976..2725108	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 2724977..2725108 +
1693561458.9941018-CDS-P-fluviatile_contig1:2724976..2725108	1693561458.9941018-CDS-P-fluviatile_contig1:2724976..2725108	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig1 2724977..2725108 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig1:2722882..2726344+
coding sequence from alignment at P-fluviatile_contig1:2722882..2726344+

protein sequence of mRNA_P-fluviatile_contig1.216.1

>prot_P-fluviatile_contig1.216.1 ID=prot_P-fluviatile_contig1.216.1|Name=mRNA_P-fluviatile_contig1.216.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=90bp
MFFTYNVNVRCPPSPAFPQHTEEDSSVCYDFRTQYLQCLHLPSIRMISKK
QMEEMAVGKDSLFLAAKALESTGGATGSAPTKPPEESST*

mRNA from alignment at P-fluviatile_contig1:2722882..2726344+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig1.216.1 ID=mRNA_P-fluviatile_contig1.216.1|Name=mRNA_P-fluviatile_contig1.216.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3463bp|location=Sequence derived from alignment at P-fluviatile_contig1:2722882..2726344+ (Porterinema fluviatile SAG_2381)
AGCGGCAGCATGGCGAGCGGTTTCGGGAAGAACAAGATCGGGAGGTGCTA
CAAGATATTCTCTATGTTCGAGGAATGCATGGTGGGTTGGAGATGATGAG
AGATGGCGACGCTTTTCGCCGGGAAAGAAGCGAATGTGTGCGCCCTCTAA
TGTTGCCCATTTCCCTTCCCCCGAACCTCGTGCAGTTTGGCAGGATCGAA
GAAGGCCACAAGTCGCAGCAGCGATTGTTTGGAAGAAAAACTCTTATATA
ATCACTTTCTCATAGGTCGCTGATGATTTGCTAGGCAGAACTAGCCAAAT
GCAGCTATACCGCGGGTTTGCCTGTAGCACACACGATTATAAGGGGGACA
GCGCGACTACACAACAGCAGCAGTTCGCCGAAGTTCAACGTAGTCTGGCT
GGGCTGCGAGCAGCTGTAGATTCTCAAGCTACGCAAGGTAAGGATTGATC
AGCATTTTTTTCGCACATATGGTCGTGTATCCTCGTCCGAGCACCCACTG
TATGTCAAGCTTGTAGCCGTGTGGAAGGGAGGAACAGACACCGCGCCGAA
GCTCTTCTCGCGCGTGATCCTGTAGAGCTGTCGACTGCTCGTGAGTCGTG
AGCATATCGAAAAGAGTATAACGCTCACCATACCATGATGCTTCGACTTC
CGGCTATACATCGCGTGCCGAAAACGTGATGAGATCGAGCAACAGTTGAT
TCGTTCGAGCAGCAGATCTGCCCTCGCCGGTTCGCGAACCGCAGTTTTCC
CTCCGTAAAAAACATTTCACGGTTACTTGTCATCGCTCGCTTGTGTGCGC
AGCAGCAGCAGGACGACAGAAAGTCTGAAGACACCTGAAACGCAACTGCT
GTGTGAAGAAGAGGCCTTACGGAACAGTAGCGCAGGGGCGTTCTCACGCC
AGTCTCCTTGAGCGCCTGCGAGTGCAGTCGGACCTGACCCTCTGCGCGTA
CGAACTTCCCTCCAGGGTAATGTTTTTCACGTACAACGTAAACGTGCGCT
GTCCCCCCTCCCCCGCGTTCCCCCAGCACACGGAAGAGGACTCGTCGGTA
TGCTACGACTTCCGCACGCAGTATTTACAGTGCCTGCACCTTCCGAGCAT
AAGAATGGTGAGAGTATGCCCGCGATATGACCCATGGTGGTGGTGGTGGG
GGTGGTGGTGGTGGTGGCGGCGGCGGTGGGCTGGGTTATGTTGTTGTCCG
AAAACGTCACGCCACATAATTCGCCTGTGGTTCTCCCCCTCTAGCATCGC
TTTGCACCGCCGCTGCTGCTGTTGTTGTTGGTTATGCTGCTCTTTCTGCT
GTCGTCGCTAACCTTCGACAATGCCGTTGGACAGTTTGAAATGCCGAACA
CGAGAAGGTATCACTTTAGGTTTTGACCAAGGGCGAGAACGCGTAAACTG
GCCCTCACTTCCTTCTTCGGCCGAAACCCGGCCCGCCGACAGAAAAACGC
GCATCCGTTTCAGCTGGCATCGCCTCCGTGGGTTCGGACTTCGGTAGATG
GCAGGCGAGAGCTTGAAAGAAAGCGCAGCGCGCTGTCACCAACCATCTTC
TGTCATTGGCCTCTCAACAATTTCACGTTGAGTTAATGGCAGATAATCCG
GACGTGTACGAGACAAACCCCATCCACTCAGTGTTTGTATTGGAAGTGCT
CGCCTCTGGTCCTGCCTGCTCTTCCTCCCTCGTTCTTCTCCTCCTCCTCA
TTATTGGGAGGGAACGACGCAAGCAGAGACGTTGCATACAAGGGCGACAA
AATGCTGTTACATCCTACCCAACGGTCGCTCTTGTTTTGTGTTGACGGGG
CTAAAGCACCCGAGATTTTGCGGATCGCAAGTAATGCAATAATTCGAAAT
CCCAGCAATCGCGTACCGAAGAAGAAACCCGAGAAAAGCAGTATGCCTGT
AAATCCGGAGTTTTTAAGCCTTCCTGAAAACACCTCTAAAGGGTCCGCAT
GTCTCGGAGCGTCTCCTGTCTGAGGCAAGTAAGGGATTTGCGGTCAACGA
CGGTCCATGAGAGCGGCGATCGAGTTCATGTTTCCCCCCAAGCGCTTCCG
CACATTCCCTTCTGTTTCTTGATGTCGTTGTCTTGTTGGCGGCAGATTTC
CAAGAAGCAGATGGAGGAGATGGCTGTGGGTAAAGACTCCCTCTTCTTGG
CCGCGAAGGCCCTCGAATCCACCGGCGGGGCAACCGGGAGCGCGCCAACA
AAACCGCCGGAAGAAAGCTCTACTTAGCATGCGTTACGAGGGATTTGGGG
GCAGGGCGTCGGGGGGGGGGATGCTTCGCTCGGGCATGGCATTTTTGTAT
CGCCATGTTTCCAAGCAGACTCGGGCGCCTTGTTGTGGCATTCCTGGAGA
CTTGACTCAAGTTACGAAGAGACGTGGAGCAGGGATTTCTCTCGAATGTC
TTAGCTGTAGGCTGAAGAAATACTCCGGGCGGGCATGGGACGTACTCAGT
GTCTGCTCCTAACTGAATTTGTACCACACAACCGCGGTGGTCGTACATCG
ACGACGACGCCGTTTCCTGCGCTTGGCTCCGAATCGAGTGGTGTACCTTT
CCGTGATACGTGACGTCTCCGCTTGACGTCCTGGGCCCACTTGCCAGGAG
CCGTTTTATGGCTACGGCGACTGAAAATGGCACCTAATACTTGCTCCCGG
TGCCCTTGTGTAACATCCATCACGTTTTTTGGAGAAATGTTCATTCGTTG
GTGAGCACTCACTAACGACGAAGCAATGAAACGGCATTACGCCGCACCTT
GGCTGAAATCAACCCGGGGTTCCACTCTGATTCAGTCGCGCTCACATGCG
CTACGACGGCATCAATCCGCGCAGCCCCGTTGCAGGGACTGAAAACAACA
CACACAAACCACCTGATTTCTCATGCTTCCGGTGTCTGGCGGGGCGGGGG
CGGGAGGCGGGTGCTGTTTGCTTGTTTCGGTCTATGGCCGCACCCCATTG
TGGCTCTTTGGCTCACGATCTCACCGCGACTCTTTTCTCAGTTGTCAGGA
TGTATCTTCTGAGTTGAACAGGCCCTGTTGATCTTCCACAGCTGCAGAGG
TCTTGGGCAAGGTTGCGTTTCCTTTTCTTTTTCAAGCACGTGCGCCAAAC
GTGGATATTGGCCGCCTGTTATCTATTTATGGACACCCCGGAGGCGTAGT
CTGTCGTCGTTGTCGCGGCCCCGCTCTTCGCTCAAGAGCCCGTTGCCACT
ACCGCGGGGCCCTAGTGCTTTGTGCTCGCCCTGCCTTCGGCAGCTGTTTT
GGCGTTGTCTTGGAGTGATCCCCCCATCGCTGCTGCCACCGCCGCCGGCG
GCGTCGTCCTCTTCTCTCGCGTCGGGCGATGCTGCTGGTGCTGCTACTAC
CAACATAAGGCGGTAGAAGGACTGGTACTCCAAGGCATCAAGGACGCTGT
CGACGAATCCATGATACTTGTGTTCCTCAAAAAGGGCCGTGTAATTGTCT
TCTTTCGCGTCCT

Coding sequence (CDS) from alignment at P-fluviatile_contig1:2722882..2726344+

>mRNA_P-fluviatile_contig1.216.1 ID=mRNA_P-fluviatile_contig1.216.1|Name=mRNA_P-fluviatile_contig1.216.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=540bp|location=Sequence derived from alignment at P-fluviatile_contig1:2722882..2726344+ (Porterinema fluviatile SAG_2381)
ATGTTTTTCACGTACAACGTAAACGTGCGCTGTCCCCCCTCCCCCGCGTT
CCCCCAGCACACGGAAGAGGACTCGTCGGTATGCTACGACTTCCGCACGC
AGTATTTACAGTGCCTGCACCTTCCGAGCATAAGAATGATGTTTTTCACG
TACAACGTAAACGTGCGCTGTCCCCCCTCCCCCGCGTTCCCCCAGCACAC
GGAAGAGGACTCGTCGGTATGCTACGACTTCCGCACGCAGTATTTACAGT
GCCTGCACCTTCCGAGCATAAGAATGATTTCCAAGAAGCAGATGGAGGAG
ATGGCTGTGGGTAAAGACTCCCTCTTCTTGGCCGCGAAGGCCCTCGAATC
CACCGGCGGGGCAACCGGGAGCGCGCCAACAAAACCGCCGGAAGAAAGCT
CTACTTAGATTTCCAAGAAGCAGATGGAGGAGATGGCTGTGGGTAAAGAC
TCCCTCTTCTTGGCCGCGAAGGCCCTCGAATCCACCGGCGGGGCAACCGG
GAGCGCGCCAACAAAACCGCCGGAAGAAAGCTCTACTTAG